Wall clock time and date at job start Tue Mar 31 2020 07:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35678 * 116.99326 * 2 1 4 4 C 1.38922 * 119.68016 * 180.25474 * 3 2 1 5 5 C 1.38384 * 119.11165 * 180.31761 * 4 3 2 6 6 C 1.50697 * 120.75888 * 179.70772 * 5 4 3 7 7 N 1.46497 * 109.47604 * 269.72595 * 6 5 4 8 8 S 1.65595 * 120.00400 * 165.00270 * 7 6 5 9 9 O 1.42101 * 106.39876 * 311.45775 * 8 7 6 10 10 O 1.42096 * 106.40242 * 178.53750 * 8 7 6 11 11 N 1.65600 * 107.21978 * 64.99328 * 8 7 6 12 12 C 1.46502 * 120.00173 * 270.00411 * 11 8 7 13 13 C 1.46506 * 119.99915 * 90.00190 * 11 8 7 14 14 H 1.09005 * 109.46943 * 0.02562 * 13 11 8 15 15 C 1.53000 * 109.47074 * 240.00242 * 13 11 8 16 16 C 1.50696 * 109.46871 * 119.99703 * 13 11 8 17 17 H 1.07999 * 120.00319 * 0.02562 * 16 13 11 18 18 C 1.37885 * 119.99717 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 13 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.38824 * 118.48132 * 359.44068 * 5 4 3 25 25 C 1.38048 * 119.29363 * 0.27378 * 24 5 4 26 26 N 1.31963 * 120.83045 * 0.02562 * 25 24 5 27 27 H 1.09005 * 109.46717 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47086 * 299.99849 * 1 2 3 29 29 H 1.08996 * 109.47129 * 59.99786 * 1 2 3 30 30 H 1.07997 * 120.44930 * 0.02716 * 4 3 2 31 31 H 1.09000 * 109.47218 * 149.71703 * 6 5 4 32 32 H 1.09004 * 109.47186 * 29.72577 * 6 5 4 33 33 H 0.96999 * 119.99336 * 344.99455 * 7 6 5 34 34 H 1.09005 * 109.46997 * 269.99464 * 12 11 8 35 35 H 1.08997 * 109.47497 * 29.99813 * 12 11 8 36 36 H 1.09004 * 109.47127 * 150.00311 * 12 11 8 37 37 H 1.08997 * 109.46749 * 299.99711 * 15 13 11 38 38 H 1.08996 * 109.47024 * 59.99854 * 15 13 11 39 39 H 1.08998 * 109.46637 * 179.97438 * 15 13 11 40 40 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 41 41 H 1.08004 * 120.35298 * 180.29782 * 24 5 4 42 42 H 1.07999 * 119.58442 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4326 1.2741 -0.0054 5 6 4.0484 2.5133 0.0014 6 6 5.5511 2.6272 0.0025 7 7 6.0372 2.6634 1.3840 8 16 7.6425 2.4127 1.7039 9 8 8.0168 1.2444 0.9867 10 8 7.7967 2.5441 3.1103 11 7 8.4800 3.6681 1.0223 12 6 8.9622 3.5638 -0.3572 13 6 8.7388 4.8833 1.7987 14 1 8.3080 4.7769 2.7943 15 6 8.1045 6.0838 1.0936 16 6 10.2259 5.0974 1.9157 17 1 10.9098 4.3986 1.4572 18 6 10.7133 6.1856 2.6081 19 7 12.0111 6.3728 2.7099 20 14 9.5303 7.3939 3.4017 21 1 9.1999 8.4711 2.4344 22 1 8.2870 6.6835 3.7952 23 1 10.1635 7.9877 4.6066 24 6 3.2503 3.6492 0.0014 25 6 1.8769 3.5098 0.0005 26 7 1.3186 2.3141 0.0001 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 4.0229 0.3698 -0.0100 31 1 5.8465 3.5422 -0.5108 32 1 5.9810 1.7674 -0.5115 33 1 5.4186 2.8343 2.1114 34 1 9.9638 3.1336 -0.3604 35 1 8.2903 2.9243 -0.9296 36 1 8.9915 4.5558 -0.8079 37 1 8.5357 6.1900 0.0982 38 1 7.0289 5.9288 1.0090 39 1 8.2966 6.9878 1.6715 40 1 12.3540 7.1385 3.1967 41 1 3.6992 4.6316 0.0018 42 1 1.2516 4.3903 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337866115.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:04 Heat of formation + Delta-G solvation = -62.207380 kcal Electronic energy + Delta-G solvation = -26471.011689 eV Core-core repulsion = 22579.238827 eV Total energy + Delta-G solvation = -3891.772862 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.94465 -38.38197 -36.86715 -36.49189 -35.75715 -35.38632 -32.53592 -32.25710 -31.01190 -30.08797 -27.73322 -26.29333 -25.83933 -25.04048 -23.73430 -22.06930 -20.99347 -19.05750 -18.37464 -17.49258 -17.37057 -17.13367 -16.54610 -16.30444 -16.21336 -15.91137 -15.27864 -14.85729 -14.61655 -14.43915 -13.79048 -13.68036 -13.54656 -13.28524 -13.07362 -12.87019 -12.43562 -12.34804 -12.23143 -11.99441 -11.97555 -11.74362 -11.62467 -11.53661 -11.49485 -11.24312 -11.12009 -10.52001 -10.19505 -10.07209 -9.98398 -9.69845 -9.52683 -9.43933 -8.81951 -8.66426 -8.18222 -6.15007 -4.15764 0.69158 0.88424 1.14534 2.76919 3.19169 3.25695 3.31822 3.34170 3.53434 3.94479 3.99597 4.25205 4.31993 4.63181 4.80582 4.81745 4.84067 4.95887 4.99422 5.13627 5.18290 5.19737 5.32379 5.39724 5.47166 5.56393 5.74038 5.95051 6.01272 6.09944 6.13638 6.18682 6.26964 6.43005 6.52607 6.74965 6.90994 6.93028 7.24189 7.35903 7.52322 7.59507 8.44208 8.89483 9.44580 10.97989 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.021325 B = 0.003186 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.710751 B = 8786.873767 C = 9417.123356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.308 6.308 3 C 0.317 3.683 4 C -0.172 4.172 5 C -0.016 4.016 6 C 0.160 3.840 7 N -1.130 6.130 8 S 2.781 3.219 9 O -0.987 6.987 10 O -0.970 6.970 11 N -0.983 5.983 12 C 0.106 3.894 13 C 0.240 3.760 14 H 0.057 0.943 15 C -0.163 4.163 16 C -0.523 4.523 17 H 0.082 0.918 18 C 0.074 3.926 19 N -0.894 5.894 20 Si 0.882 3.118 21 H -0.277 1.277 22 H -0.264 1.264 23 H -0.294 1.294 24 C -0.193 4.193 25 C 0.137 3.863 26 N -0.540 5.540 27 H 0.095 0.905 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.146 0.854 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.414 0.586 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.032 0.968 39 H 0.049 0.951 40 H 0.266 0.734 41 H 0.143 0.857 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.735 -6.115 -8.490 24.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.215 6.215 3 C 0.139 3.861 4 C -0.194 4.194 5 C -0.025 4.025 6 C 0.034 3.966 7 N -0.889 5.889 8 S 2.789 3.211 9 O -0.970 6.970 10 O -0.954 6.954 11 N -0.825 5.825 12 C -0.040 4.040 13 C 0.135 3.865 14 H 0.075 0.925 15 C -0.221 4.221 16 C -0.562 4.562 17 H 0.100 0.900 18 C -0.129 4.129 19 N -0.531 5.531 20 Si 0.712 3.288 21 H -0.204 1.204 22 H -0.189 1.189 23 H -0.221 1.221 24 C -0.214 4.214 25 C -0.018 4.018 26 N -0.264 5.264 27 H 0.114 0.886 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.163 0.837 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.247 0.753 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.160 0.840 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -21.869 -7.155 -8.097 24.393 hybrid contribution -0.322 1.458 0.534 1.586 sum -22.192 -5.696 -7.564 24.127 Atomic orbital electron populations 1.22857 0.77192 1.02959 1.02422 1.86257 1.22934 1.24486 1.87807 1.19807 0.89262 0.84743 0.92338 1.21056 0.92023 0.99384 1.06908 1.20084 0.95833 0.92249 0.94354 1.20146 0.89312 1.03487 0.83699 1.56319 1.29074 1.90500 1.12993 1.01974 0.72363 0.73455 0.73270 1.93560 1.81977 1.46618 1.74876 1.93623 1.84894 1.86750 1.30132 1.57440 1.68229 1.33687 1.23163 1.21239 0.99361 1.02136 0.81234 1.19091 0.97806 0.79617 0.89995 0.92519 1.22496 0.98014 0.99664 1.01975 1.21155 0.89228 1.10796 1.35034 0.89963 1.24914 0.95031 0.97526 0.95456 1.69874 1.11857 1.29563 1.41821 0.86949 0.81509 0.81647 0.78691 1.20401 1.18931 1.22096 1.22005 0.94681 0.99717 1.05024 1.22404 0.92765 0.93602 0.93009 1.67305 1.41092 0.98900 1.19084 0.88620 0.92298 0.92321 0.83664 0.89958 0.89017 0.75279 0.92590 0.93078 0.90786 0.92112 0.94855 0.93229 0.92424 0.83951 0.82147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.38 101.05 1.05 1.35 16 2 O -0.31 -3.28 10.48 -18.73 -0.20 -3.48 16 3 C 0.32 3.54 7.49 -17.12 -0.13 3.42 16 4 C -0.17 -1.83 9.74 -39.27 -0.38 -2.21 16 5 C -0.02 -0.16 5.31 -104.35 -0.55 -0.71 16 6 C 0.16 1.66 6.42 -5.20 -0.03 1.62 16 7 N -1.13 -14.49 6.05 -11.66 -0.07 -14.56 16 8 S 2.78 49.74 6.09 -107.50 -0.66 49.09 16 9 O -0.99 -19.01 16.68 -57.17 -0.95 -19.97 16 10 O -0.97 -21.13 16.70 -57.17 -0.95 -22.08 16 11 N -0.98 -18.52 3.12 -115.84 -0.36 -18.88 16 12 C 0.11 1.71 9.53 59.85 0.57 2.28 16 13 C 0.24 5.32 2.21 -69.08 -0.15 5.17 16 14 H 0.06 1.34 5.97 -51.93 -0.31 1.03 16 15 C -0.16 -3.11 8.65 37.16 0.32 -2.79 16 16 C -0.52 -14.09 8.95 -34.44 -0.31 -14.40 16 17 H 0.08 2.41 7.89 -52.49 -0.41 2.00 16 18 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 19 N -0.89 -26.61 13.96 55.43 0.77 -25.83 16 20 Si 0.88 21.00 24.37 -169.99 -4.14 16.86 16 21 H -0.28 -6.26 6.87 56.52 0.39 -5.87 16 22 H -0.26 -6.02 6.53 56.52 0.37 -5.65 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 C -0.19 -1.67 9.81 -39.43 -0.39 -2.06 16 25 C 0.14 1.19 11.18 -17.56 -0.20 1.00 16 26 N -0.54 -5.74 9.22 -13.33 -0.12 -5.86 16 27 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 29 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 30 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 31 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.09 0.93 7.71 -51.93 -0.40 0.53 16 33 H 0.41 4.77 8.64 -34.47 -0.30 4.47 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.64 7.79 -51.93 -0.40 0.24 16 36 H 0.07 1.12 6.43 -51.93 -0.33 0.78 16 37 H 0.06 1.10 6.66 -51.93 -0.35 0.75 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.05 1.02 3.28 -51.93 -0.17 0.85 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 42 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 357.88 15.07 5.39 5.39 Total: -1.00 -34.81 357.88 -7.25 -42.06 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -5.66 Total: 2.63 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -0.30 Total: -5.37 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: 0.22 Total: -65.13 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -2.10 Total: -45.52 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.14 Total: 16.86 kcal Atomic # 16 Polarization: 49.74 SS G_CDS: -0.66 Total: 49.09 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.81 -7.25 -42.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337866115.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.148 kcal (2) G-P(sol) polarization free energy of solvation -34.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds