Wall clock time and date at job start Tue Mar 31 2020 05:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99812 * 2 1 4 4 H 1.48492 * 109.46992 * 239.99665 * 3 2 1 5 5 H 1.48503 * 109.47086 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47288 * 119.99463 * 3 2 1 7 7 C 1.37870 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99642 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00300 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99773 * 180.02562 * 11 10 9 14 14 N 1.46506 * 109.47289 * 179.97438 * 13 11 10 15 15 C 1.34774 * 120.00072 * 179.97438 * 14 13 11 16 16 O 1.21641 * 120.00190 * 0.02562 * 15 14 13 17 17 C 1.47136 * 119.99790 * 180.02562 * 15 14 13 18 18 C 1.37943 * 120.55390 * 359.71912 * 17 15 14 19 19 N 1.33952 * 122.20457 * 179.72791 * 18 17 15 20 20 H 0.97004 * 118.60318 * 180.25849 * 19 18 17 21 21 C 1.37803 * 122.80554 * 0.59127 * 19 18 17 22 22 C 1.39274 * 120.52842 * 179.71082 * 21 19 18 23 23 C 1.37736 * 119.97281 * 179.97438 * 22 21 19 24 24 C 1.38779 * 120.72770 * 0.02562 * 23 22 21 25 25 C 1.37719 * 120.29286 * 359.94313 * 24 23 22 26 26 C 1.39494 * 119.60341 * 0.07705 * 25 24 23 27 27 C 1.47145 * 120.55275 * 180.02562 * 17 15 14 28 28 O 1.21861 * 121.41266 * 359.97438 * 27 17 15 29 29 H 0.96999 * 120.00284 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.46460 * 60.00233 * 9 7 2 31 31 H 1.09001 * 109.46740 * 300.00144 * 9 7 2 32 32 H 0.96998 * 120.00192 * 359.97438 * 10 9 7 33 33 H 1.09001 * 109.47438 * 59.99564 * 13 11 10 34 34 H 1.09004 * 109.47113 * 299.99819 * 13 11 10 35 35 H 0.97001 * 119.99251 * 0.02562 * 14 13 11 36 36 H 1.08002 * 118.89598 * 0.02562 * 18 17 15 37 37 H 1.08001 * 120.01233 * 0.02562 * 22 21 19 38 38 H 1.07999 * 119.63679 * 180.02562 * 23 22 21 39 39 H 1.07994 * 119.85697 * 179.97438 * 24 23 22 40 40 H 1.08006 * 120.19997 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7538 -4.8833 0.0000 12 8 0.5615 -5.1049 0.0000 13 6 2.7332 -6.0287 0.0006 14 7 2.0007 -7.2975 0.0005 15 6 2.6747 -8.4647 0.0004 16 8 3.8911 -8.4646 0.0009 17 6 1.9390 -9.7389 -0.0003 18 6 0.5596 -9.7523 0.0050 19 7 -0.1433 -10.8925 -0.0009 20 1 -1.1119 -10.8410 -0.0006 21 6 0.4509 -12.1359 -0.0005 22 6 -0.3264 -13.2915 -0.0007 23 6 0.2795 -14.5284 -0.0009 24 6 1.6627 -14.6404 -0.0004 25 6 2.4511 -13.5112 -0.0009 26 6 1.8512 -12.2519 -0.0002 27 6 2.6624 -11.0202 0.0002 28 8 3.8803 -11.0620 0.0007 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5570 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 3.1567 -3.4353 0.0002 33 1 3.3592 -5.9711 0.8910 34 1 3.3605 -5.9708 -0.8890 35 1 1.0307 -7.2974 -0.0003 36 1 0.0286 -8.8118 0.0092 37 1 -1.4039 -13.2177 -0.0015 38 1 -0.3286 -15.4210 -0.0015 39 1 2.1230 -15.6173 -0.0002 40 1 3.5275 -13.6001 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340458229.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:40 Heat of formation + Delta-G solvation = -65.067319 kcal Electronic energy + Delta-G solvation = -25927.654743 eV Core-core repulsion = 21900.313914 eV Total energy + Delta-G solvation = -4027.340829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.45245 -39.72552 -38.70045 -37.99181 -37.54597 -34.57537 -34.04292 -32.51240 -32.35491 -31.34689 -30.40552 -28.48526 -26.50649 -24.53894 -24.35504 -22.75458 -22.55115 -21.00118 -20.03501 -19.12895 -18.82865 -18.18494 -17.32630 -16.39724 -16.14653 -15.87807 -15.76789 -15.42832 -15.28767 -15.00842 -14.93319 -14.74808 -14.38838 -14.18416 -14.17527 -13.61637 -13.53616 -13.10933 -12.74603 -12.63313 -12.43755 -12.42762 -12.01136 -11.79802 -11.68798 -11.05837 -10.90667 -10.38107 -10.15992 -9.76760 -9.52702 -9.51385 -9.48070 -9.30413 -9.04464 -8.80233 -8.18872 -8.02765 -6.22057 -4.29271 0.28508 0.37276 1.22585 2.28187 2.43526 3.00791 3.11723 3.19994 3.23591 3.28412 3.30110 3.71142 3.78767 3.98897 4.10756 4.28407 4.32584 4.41283 4.52044 4.65139 4.77913 5.01778 5.14496 5.17805 5.30270 5.33918 5.44782 5.47462 5.56220 5.63360 5.85974 6.02408 6.07695 6.38786 6.41139 6.48711 7.18619 7.25878 7.41669 7.58209 7.59819 7.69968 7.89439 8.34871 8.48243 8.66150 8.91315 9.37339 10.88009 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.034806 B = 0.001905 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.263654 B =14698.472637 C =15482.289460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.250 3.750 10 N -0.704 5.704 11 C 0.495 3.505 12 O -0.560 6.560 13 C 0.101 3.899 14 N -0.720 5.720 15 C 0.577 3.423 16 O -0.520 6.520 17 C -0.325 4.325 18 C 0.215 3.785 19 N -0.595 5.595 20 H 0.423 0.577 21 C 0.180 3.820 22 C -0.167 4.167 23 C -0.061 4.061 24 C -0.153 4.153 25 C -0.032 4.032 26 C -0.181 4.181 27 C 0.432 3.568 28 O -0.448 6.448 29 H 0.267 0.733 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.395 0.605 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.403 0.597 36 H 0.172 0.828 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.616 -29.034 0.010 29.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.351 5.351 11 C 0.279 3.721 12 O -0.441 6.441 13 C -0.027 4.027 14 N -0.377 5.377 15 C 0.364 3.636 16 O -0.395 6.395 17 C -0.337 4.337 18 C 0.081 3.919 19 N -0.203 5.203 20 H 0.260 0.740 21 C 0.079 3.921 22 C -0.188 4.188 23 C -0.080 4.080 24 C -0.172 4.172 25 C -0.050 4.050 26 C -0.185 4.185 27 C 0.313 3.687 28 O -0.325 6.325 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.228 0.772 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.241 0.759 36 H 0.189 0.811 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.035 -29.044 0.008 29.202 hybrid contribution -0.298 1.208 0.002 1.244 sum -3.333 -27.836 0.011 28.035 Atomic orbital electron populations 1.69954 1.06126 1.27515 1.48736 1.24943 0.94937 0.99509 0.94559 0.86446 0.79403 0.82131 0.78787 1.20009 1.21068 1.20004 1.21192 0.93364 0.90366 1.53517 0.91767 1.19161 0.88229 0.81804 0.97887 1.46419 1.11632 1.05831 1.71244 1.20361 0.89267 0.84770 0.77694 1.90612 1.16722 1.84696 1.52071 1.21108 0.94409 0.82571 1.04578 1.45588 1.10839 1.04530 1.76705 1.17312 0.87153 0.82211 0.76903 1.90857 1.12818 1.86953 1.48922 1.21863 0.91949 0.96111 1.23814 1.22158 0.93051 0.89880 0.86819 1.40858 1.10855 1.03144 1.65398 0.73957 1.17920 0.91972 0.84787 0.97457 1.20730 0.99693 0.90804 1.07563 1.21126 0.94965 0.96968 0.94959 1.21184 0.93647 0.98905 1.03461 1.21190 1.01103 0.90204 0.92542 1.20314 0.91639 0.96522 1.10043 1.19317 0.88468 0.86172 0.74739 1.90755 1.14142 1.88328 1.39264 0.92348 0.95328 0.95314 0.77170 0.88650 0.88650 0.75883 0.81072 0.84724 0.84904 0.84960 0.84065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.55 29.54 -169.99 -5.02 15.53 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 7 C -0.55 -14.45 9.28 -34.44 -0.32 -14.77 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.34 5.43 -5.19 -0.03 6.32 16 10 N -0.70 -14.04 5.55 -61.47 -0.34 -14.38 16 11 C 0.49 9.12 7.90 -10.98 -0.09 9.03 16 12 O -0.56 -11.84 15.67 5.56 0.09 -11.75 16 13 C 0.10 1.49 6.15 -5.19 -0.03 1.46 16 14 N -0.72 -10.02 5.48 -62.65 -0.34 -10.36 16 15 C 0.58 8.96 7.76 -12.65 -0.10 8.86 16 16 O -0.52 -10.30 15.55 -14.89 -0.23 -10.53 16 17 C -0.33 -4.09 6.04 -102.78 -0.62 -4.71 16 18 C 0.21 1.61 10.65 -16.73 -0.18 1.43 16 19 N -0.60 -3.09 5.21 -10.42 -0.05 -3.14 16 20 H 0.42 0.54 8.73 -40.82 -0.36 0.19 16 21 C 0.18 1.29 6.66 -83.94 -0.56 0.73 16 22 C -0.17 -0.80 9.86 -39.38 -0.39 -1.19 16 23 C -0.06 -0.28 10.01 -39.56 -0.40 -0.68 16 24 C -0.15 -0.91 10.03 -39.57 -0.40 -1.31 16 25 C -0.03 -0.28 9.65 -39.30 -0.38 -0.66 16 26 C -0.18 -1.88 5.89 -104.81 -0.62 -2.50 16 27 C 0.43 6.15 7.15 -32.20 -0.23 5.92 16 28 O -0.45 -8.16 15.85 -15.08 -0.24 -8.40 16 29 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.40 6.80 8.32 -40.82 -0.34 6.46 16 33 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.40 4.93 5.45 -40.82 -0.22 4.71 16 36 H 0.17 0.84 6.31 -52.49 -0.33 0.51 16 37 H 0.13 0.25 8.06 -52.49 -0.42 -0.18 16 38 H 0.13 0.26 8.06 -52.49 -0.42 -0.16 16 39 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.14 1.26 7.79 -52.48 -0.41 0.85 16 LS Contribution 354.60 15.07 5.34 5.34 Total: -1.00 -38.58 354.60 -8.64 -47.22 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -4.15 Total: 5.61 kcal Atomic # 6 Polarization: 14.02 SS G_CDS: -4.43 Total: 9.59 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: 0.00 Total: -52.61 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.38 Total: -30.68 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -38.58 -8.64 -47.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340458229.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.846 kcal (2) G-P(sol) polarization free energy of solvation -38.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds