Wall clock time and date at job start Tue Mar 31 2020 05:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99812 * 2 1 4 4 H 1.48492 * 109.46992 * 239.99665 * 3 2 1 5 5 H 1.48503 * 109.47086 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47288 * 119.99463 * 3 2 1 7 7 C 1.37870 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99642 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00300 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99773 * 180.02562 * 11 10 9 14 14 N 1.46506 * 109.47289 * 179.97438 * 13 11 10 15 15 C 1.34774 * 120.00072 * 179.97438 * 14 13 11 16 16 O 1.21641 * 120.00190 * 0.02562 * 15 14 13 17 17 C 1.47136 * 119.99790 * 180.02562 * 15 14 13 18 18 C 1.37943 * 120.55390 * 359.71912 * 17 15 14 19 19 N 1.33952 * 122.20457 * 179.72791 * 18 17 15 20 20 H 0.97004 * 118.60318 * 180.25849 * 19 18 17 21 21 C 1.37803 * 122.80554 * 0.59127 * 19 18 17 22 22 C 1.39274 * 120.52842 * 179.71082 * 21 19 18 23 23 C 1.37736 * 119.97281 * 179.97438 * 22 21 19 24 24 C 1.38779 * 120.72770 * 0.02562 * 23 22 21 25 25 C 1.37719 * 120.29286 * 359.94313 * 24 23 22 26 26 C 1.39494 * 119.60341 * 0.07705 * 25 24 23 27 27 C 1.47145 * 120.55275 * 180.02562 * 17 15 14 28 28 O 1.21861 * 121.41266 * 359.97438 * 27 17 15 29 29 H 0.96999 * 120.00284 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.46460 * 60.00233 * 9 7 2 31 31 H 1.09001 * 109.46740 * 300.00144 * 9 7 2 32 32 H 0.96998 * 120.00192 * 359.97438 * 10 9 7 33 33 H 1.09001 * 109.47438 * 59.99564 * 13 11 10 34 34 H 1.09004 * 109.47113 * 299.99819 * 13 11 10 35 35 H 0.97001 * 119.99251 * 0.02562 * 14 13 11 36 36 H 1.08002 * 118.89598 * 0.02562 * 18 17 15 37 37 H 1.08001 * 120.01233 * 0.02562 * 22 21 19 38 38 H 1.07999 * 119.63679 * 180.02562 * 23 22 21 39 39 H 1.07994 * 119.85697 * 179.97438 * 24 23 22 40 40 H 1.08006 * 120.19997 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7538 -4.8833 0.0000 12 8 0.5615 -5.1049 0.0000 13 6 2.7332 -6.0287 0.0006 14 7 2.0007 -7.2975 0.0005 15 6 2.6747 -8.4647 0.0004 16 8 3.8911 -8.4646 0.0009 17 6 1.9390 -9.7389 -0.0003 18 6 0.5596 -9.7523 0.0050 19 7 -0.1433 -10.8925 -0.0009 20 1 -1.1119 -10.8410 -0.0006 21 6 0.4509 -12.1359 -0.0005 22 6 -0.3264 -13.2915 -0.0007 23 6 0.2795 -14.5284 -0.0009 24 6 1.6627 -14.6404 -0.0004 25 6 2.4511 -13.5112 -0.0009 26 6 1.8512 -12.2519 -0.0002 27 6 2.6624 -11.0202 0.0002 28 8 3.8803 -11.0620 0.0007 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5570 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 3.1567 -3.4353 0.0002 33 1 3.3592 -5.9711 0.8910 34 1 3.3605 -5.9708 -0.8890 35 1 1.0307 -7.2974 -0.0003 36 1 0.0286 -8.8118 0.0092 37 1 -1.4039 -13.2177 -0.0015 38 1 -0.3286 -15.4210 -0.0015 39 1 2.1230 -15.6173 -0.0002 40 1 3.5275 -13.6001 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340458229.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:39 Heat of formation + Delta-G solvation = -95.052276 kcal Electronic energy + Delta-G solvation = -25928.954988 eV Core-core repulsion = 21900.313914 eV Total energy + Delta-G solvation = -4028.641075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.16545 -41.01618 -40.02188 -38.96833 -38.22088 -36.28931 -35.43487 -34.38858 -33.21813 -32.00026 -31.07077 -30.07674 -28.10602 -25.36391 -25.11298 -24.37250 -23.38082 -22.04289 -21.59078 -20.18741 -19.44238 -18.94570 -18.77858 -17.79239 -17.35353 -16.98376 -16.94669 -16.78480 -16.52349 -16.31867 -15.78569 -15.65520 -15.48297 -15.34624 -14.93030 -14.78738 -14.47276 -14.39929 -14.26081 -14.00993 -13.81232 -13.40598 -13.07932 -12.96029 -12.91235 -12.68290 -12.28956 -12.24386 -11.51303 -11.32059 -10.96127 -10.79507 -10.51888 -10.48789 -10.22492 -10.07668 -9.86727 -8.90508 -8.28952 -6.44411 -0.39300 -0.26026 0.63163 1.44634 1.47513 1.53384 1.55437 1.60376 1.71936 1.82582 2.34066 2.35984 2.62117 2.91739 3.06379 3.07493 3.54227 3.62419 3.77105 3.79565 3.98100 4.21192 4.30423 4.31593 4.34262 4.43534 4.56001 4.74879 4.87131 4.98838 5.07711 5.24324 5.26002 5.36642 5.44675 5.47006 5.49283 5.64514 5.84581 5.86089 6.08383 6.50774 6.64762 6.78336 6.80653 7.21073 7.24683 7.35810 8.82516 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.034806 B = 0.001905 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.263654 B =14698.472637 C =15482.289460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.980 3.020 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.560 4.560 8 H 0.082 0.918 9 C 0.267 3.733 10 N -0.701 5.701 11 C 0.501 3.499 12 O -0.586 6.586 13 C 0.112 3.888 14 N -0.712 5.712 15 C 0.578 3.422 16 O -0.576 6.576 17 C -0.383 4.383 18 C 0.266 3.734 19 N -0.564 5.564 20 H 0.449 0.551 21 C 0.167 3.833 22 C -0.148 4.148 23 C -0.055 4.055 24 C -0.143 4.143 25 C -0.061 4.061 26 C -0.207 4.207 27 C 0.415 3.585 28 O -0.521 6.521 29 H 0.269 0.731 30 H -0.004 1.004 31 H -0.004 1.004 32 H 0.410 0.590 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.412 0.588 36 H 0.206 0.794 37 H 0.179 0.821 38 H 0.173 0.827 39 H 0.155 0.845 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.101 -30.599 0.012 31.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.598 4.598 8 H 0.100 0.900 9 C 0.144 3.856 10 N -0.351 5.351 11 C 0.288 3.712 12 O -0.467 6.467 13 C -0.015 4.015 14 N -0.369 5.369 15 C 0.369 3.631 16 O -0.456 6.456 17 C -0.395 4.395 18 C 0.127 3.873 19 N -0.172 5.172 20 H 0.291 0.709 21 C 0.066 3.934 22 C -0.168 4.168 23 C -0.073 4.073 24 C -0.161 4.161 25 C -0.080 4.080 26 C -0.211 4.211 27 C 0.302 3.698 28 O -0.403 6.403 29 H 0.078 0.922 30 H 0.014 0.986 31 H 0.014 0.986 32 H 0.246 0.754 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.252 0.748 36 H 0.223 0.777 37 H 0.196 0.804 38 H 0.190 0.810 39 H 0.173 0.827 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.593 -30.674 0.010 31.180 hybrid contribution 0.231 1.453 0.002 1.472 sum -5.363 -29.221 0.012 29.709 Atomic orbital electron populations 1.70097 1.08009 1.28600 1.49847 1.25965 0.95776 1.03598 0.93903 0.85268 0.77975 0.77013 0.79349 1.18930 1.21014 1.18920 1.21606 0.94347 0.90779 1.53044 0.90041 1.18612 0.88514 0.83697 0.94761 1.46137 1.11672 1.05327 1.71941 1.20849 0.89414 0.84871 0.76104 1.90592 1.18207 1.85098 1.52838 1.20987 0.93392 0.81377 1.05734 1.45482 1.11147 1.03803 1.76447 1.17725 0.86684 0.83179 0.75561 1.90814 1.15219 1.87673 1.51850 1.21488 0.93854 0.94089 1.30077 1.22396 0.91362 0.91674 0.81868 1.40973 1.12096 1.02116 1.62002 0.70859 1.18085 0.90868 0.86293 0.98167 1.21251 1.01557 0.89486 1.04482 1.21656 0.94415 0.98523 0.92727 1.21520 0.94561 0.98666 1.01386 1.21215 1.00827 0.91136 0.94788 1.20252 0.93073 0.95405 1.12325 1.20005 0.88213 0.88269 0.73346 1.90696 1.16662 1.89361 1.43608 0.92219 0.98633 0.98618 0.75381 0.87490 0.87491 0.74795 0.77737 0.80387 0.80963 0.82726 0.86090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.18 13.29 21.44 0.28 -53.89 16 2 C 0.01 0.41 5.46 84.65 0.46 0.88 16 3 Si 0.98 41.76 29.54 68.60 2.03 43.79 16 4 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 6 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.56 -29.69 9.28 25.60 0.24 -29.45 16 8 H 0.08 3.94 7.60 -2.91 -0.02 3.92 16 9 C 0.27 13.91 5.43 85.64 0.46 14.37 16 10 N -0.70 -28.14 5.55 -466.79 -2.59 -30.73 16 11 C 0.50 18.46 7.90 87.66 0.69 19.15 16 12 O -0.59 -24.78 15.67 -3.03 -0.05 -24.82 16 13 C 0.11 3.32 6.15 85.63 0.53 3.85 16 14 N -0.71 -19.78 5.48 -470.36 -2.58 -22.35 16 15 C 0.58 18.84 7.76 86.58 0.67 19.52 16 16 O -0.58 -24.59 15.55 15.08 0.23 -24.36 16 17 C -0.38 -9.99 6.04 -18.67 -0.11 -10.10 16 18 C 0.27 3.42 10.65 84.30 0.90 4.32 16 19 N -0.56 -3.76 5.21 -186.89 -0.97 -4.73 16 20 H 0.45 -1.37 8.73 -92.71 -0.81 -2.17 16 21 C 0.17 1.94 6.66 39.01 0.26 2.20 16 22 C -0.15 -0.65 9.86 22.40 0.22 -0.43 16 23 C -0.05 -0.24 10.01 22.28 0.22 -0.02 16 24 C -0.14 -1.39 10.03 22.28 0.22 -1.16 16 25 C -0.06 -1.13 9.65 22.45 0.22 -0.91 16 26 C -0.21 -4.42 5.89 -19.99 -0.12 -4.53 16 27 C 0.42 12.96 7.15 27.05 0.19 13.15 16 28 O -0.52 -21.57 15.85 14.38 0.23 -21.34 16 29 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 30 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 31 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 32 H 0.41 13.91 8.32 -92.71 -0.77 13.13 16 33 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 34 H 0.11 2.98 8.14 -2.38 -0.02 2.96 16 35 H 0.41 9.63 5.45 -92.71 -0.50 9.13 16 36 H 0.21 1.27 6.31 -2.91 -0.02 1.25 16 37 H 0.18 -0.70 8.06 -2.91 -0.02 -0.72 16 38 H 0.17 -0.47 8.06 -2.91 -0.02 -0.50 16 39 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 40 H 0.12 2.59 7.79 -2.91 -0.02 2.57 16 Total: -1.00 -93.07 354.60 0.70 -92.37 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -0.95 Total: 15.26 kcal Atomic # 6 Polarization: 25.75 SS G_CDS: 5.06 Total: 30.81 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -5.85 Total: -111.70 kcal Atomic # 8 Polarization: -70.94 SS G_CDS: 0.42 Total: -70.53 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -93.07 0.70 -92.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340458229.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.685 kcal (2) G-P(sol) polarization free energy of solvation -93.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds