Wall clock time and date at job start Tue Mar 31 2020 05:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86807 * 120.00263 * 2 1 4 4 H 1.48499 * 109.46950 * 269.99835 * 3 2 1 5 5 H 1.48497 * 109.46974 * 29.99733 * 3 2 1 6 6 H 1.48495 * 109.47023 * 149.99704 * 3 2 1 7 7 C 1.38946 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00243 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99833 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99969 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99755 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00142 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.47093 * 180.02562 * 12 10 9 14 14 C 1.34776 * 119.99631 * 179.97438 * 13 12 10 15 15 O 1.21276 * 120.00491 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99687 * 179.97438 * 14 13 12 17 17 N 1.46504 * 109.47163 * 180.02562 * 16 14 13 18 18 C 1.36531 * 118.86579 * 89.99660 * 17 16 14 19 19 C 1.34289 * 122.41526 * 180.02562 * 18 17 16 20 20 C 1.46378 * 119.41838 * 0.02562 * 19 18 17 21 21 C 1.39573 * 122.04818 * 180.02562 * 20 19 18 22 22 C 1.36720 * 119.49331 * 179.97438 * 21 20 19 23 23 C 1.38905 * 120.88653 * 0.02562 * 22 21 20 24 24 C 1.36739 * 120.88867 * 0.02562 * 23 22 21 25 25 C 1.39475 * 119.50232 * 359.97438 * 24 23 22 26 26 C 1.34790 * 118.85960 * 270.00125 * 17 16 14 27 27 O 1.21789 * 120.38865 * 359.97438 * 26 17 16 28 28 H 0.97006 * 119.99975 * 0.02562 * 1 2 3 29 29 H 0.96994 * 120.00151 * 359.97438 * 9 7 2 30 30 H 1.08994 * 109.46989 * 59.99410 * 12 10 9 31 31 H 1.09005 * 109.46518 * 299.99400 * 12 10 9 32 32 H 0.97002 * 120.00082 * 359.97438 * 13 12 10 33 33 H 1.09002 * 109.47161 * 59.99964 * 16 14 13 34 34 H 1.08995 * 109.47270 * 300.00061 * 16 14 13 35 35 H 1.08002 * 118.78930 * 359.97438 * 18 17 16 36 36 H 1.07998 * 120.29115 * 180.02562 * 19 18 17 37 37 H 1.08003 * 120.25353 * 359.95409 * 21 20 19 38 38 H 1.08003 * 119.56123 * 179.97438 * 22 21 20 39 39 H 1.08000 * 119.55407 * 180.02562 * 23 22 21 40 40 H 1.08004 * 120.25158 * 180.27752 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0464 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0001 12 6 1.2436 -4.8629 0.0011 13 7 2.1956 -5.9765 0.0016 14 6 1.7462 -7.2471 0.0027 15 8 0.5539 -7.4687 0.0037 16 6 2.7255 -8.3926 0.0026 17 7 1.9930 -9.6614 0.0033 18 6 1.6628 -10.2325 -1.1920 19 6 0.9922 -11.3930 -1.2746 20 6 0.5935 -12.0819 -0.0461 21 6 -0.1044 -13.2905 -0.0679 22 6 -0.4504 -13.8892 1.1115 23 6 -0.1172 -13.3107 2.3296 24 6 0.5652 -12.1268 2.3812 25 6 0.9315 -11.4929 1.1941 26 6 1.6681 -10.2244 1.1841 27 8 1.9803 -9.6850 2.2305 28 1 -0.4850 0.8401 -0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.6165 -4.9208 -0.8885 31 1 0.6174 -4.9204 0.8915 32 1 3.1493 -5.7993 0.0012 33 1 3.3529 -8.3344 0.8921 34 1 3.3515 -8.3354 -0.8878 35 1 1.9510 -9.7321 -2.1048 36 1 0.7491 -11.8143 -2.2388 37 1 -0.3693 -13.7490 -1.0091 38 1 -0.9907 -14.8242 1.0960 39 1 -0.4009 -13.8025 3.2483 40 1 0.8229 -11.6884 3.3340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343521168.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:18 Heat of formation + Delta-G solvation = -59.321639 kcal Electronic energy + Delta-G solvation = -26269.618657 eV Core-core repulsion = 22242.526980 eV Total energy + Delta-G solvation = -4027.091678 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.52160 -39.65740 -38.62122 -38.03263 -36.95699 -34.53763 -33.75646 -33.28277 -31.62142 -31.42525 -29.77887 -29.00851 -26.99724 -24.62474 -24.11075 -23.60491 -21.94160 -20.56472 -19.68787 -18.64565 -18.22338 -18.10457 -17.59401 -17.38121 -15.83387 -15.74818 -15.49699 -15.36689 -15.22914 -15.17669 -14.68354 -14.44206 -14.20858 -14.08012 -13.93019 -13.52268 -13.39961 -12.95384 -12.93561 -12.48219 -12.26306 -11.97567 -11.94166 -11.84756 -11.66488 -11.33486 -11.15121 -10.48494 -10.35586 -10.26541 -10.16356 -9.67309 -9.61830 -9.31841 -8.93396 -8.68850 -8.14147 -7.95591 -6.54802 -3.97111 0.50219 0.71454 1.97113 2.24653 2.59570 2.69061 3.09276 3.19736 3.23752 3.31316 3.69138 3.79258 4.08254 4.16167 4.28323 4.50095 4.60352 4.69164 4.76239 4.79638 4.82646 4.98464 5.04101 5.08129 5.13564 5.31759 5.54523 5.59795 5.69107 5.82507 5.89491 5.96642 6.01088 6.14773 6.16755 6.29565 6.53353 6.59347 6.92195 7.42793 7.60248 7.73469 7.87770 8.25590 8.40886 9.00770 9.34913 9.82344 10.61936 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.032587 B = 0.001988 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.040967 B =14082.752218 C =14170.952273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.548 5.548 10 C 0.427 3.573 11 O -0.598 6.598 12 C 0.110 3.890 13 N -0.701 5.701 14 C 0.497 3.503 15 O -0.536 6.536 16 C 0.077 3.923 17 N -0.504 5.504 18 C 0.128 3.872 19 C -0.210 4.210 20 C 0.010 3.990 21 C -0.128 4.128 22 C -0.084 4.084 23 C -0.143 4.143 24 C -0.047 4.047 25 C -0.151 4.151 26 C 0.551 3.449 27 O -0.521 6.521 28 H 0.275 0.725 29 H 0.396 0.604 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.413 0.587 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.158 0.842 36 H 0.148 0.852 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.613 -26.293 -2.745 26.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.124 0.876 9 N -0.182 5.182 10 C 0.213 3.787 11 O -0.484 6.484 12 C -0.018 4.018 13 N -0.356 5.356 14 C 0.281 3.719 15 O -0.413 6.413 16 C -0.049 4.049 17 N -0.218 5.218 18 C 0.008 3.992 19 C -0.233 4.233 20 C 0.008 3.992 21 C -0.147 4.147 22 C -0.103 4.103 23 C -0.161 4.161 24 C -0.066 4.066 25 C -0.154 4.154 26 C 0.346 3.654 27 O -0.399 6.399 28 H 0.085 0.915 29 H 0.230 0.770 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.251 0.749 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.175 0.825 36 H 0.166 0.834 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.633 -25.868 -2.078 25.959 hybrid contribution 0.059 1.084 -0.133 1.094 sum 0.692 -24.784 -2.210 24.892 Atomic orbital electron populations 1.69617 1.06031 1.28596 1.49123 1.25345 0.95686 1.00001 0.96712 0.85797 0.79238 0.80412 0.78492 1.20244 1.20769 1.19285 1.19736 0.93476 0.81953 1.48351 0.87618 1.41799 1.09510 1.04489 1.62419 1.19697 0.88281 0.84942 0.85805 1.90495 1.13652 1.86793 1.57509 1.20972 0.91797 0.85655 1.03348 1.45602 1.11816 1.04363 1.73813 1.20668 0.89889 0.84138 0.77247 1.90739 1.16377 1.84630 1.49572 1.21730 0.94254 0.81448 1.07484 1.44621 1.50472 1.20491 1.06246 1.21427 0.95386 0.93917 0.88448 1.21394 1.07044 0.97294 0.97586 1.19127 0.94254 0.93786 0.91999 1.20855 0.99990 0.94989 0.98823 1.21054 0.97409 0.99389 0.92413 1.20892 1.00618 0.96289 0.98335 1.20837 0.94342 0.93921 0.97461 1.19810 1.05106 0.96020 0.94473 1.18137 0.79445 0.85113 0.82657 1.90880 1.54207 1.64340 1.30441 0.91536 0.77018 0.89732 0.89770 0.74926 0.85349 0.85908 0.82502 0.83389 0.85055 0.85580 0.85429 0.84655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.78 13.05 55.50 0.72 -23.06 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.42 29.55 -169.99 -5.02 15.40 16 4 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.31 -8.25 9.68 -14.93 -0.14 -8.40 16 8 H 0.11 2.96 7.16 -52.48 -0.38 2.59 16 9 N -0.55 -13.49 5.29 -10.96 -0.06 -13.55 16 10 C 0.43 9.66 7.85 -10.99 -0.09 9.57 16 11 O -0.60 -14.98 15.24 5.55 0.08 -14.90 16 12 C 0.11 2.00 6.15 -5.19 -0.03 1.97 16 13 N -0.70 -11.13 5.53 -61.47 -0.34 -11.47 16 14 C 0.50 7.55 7.89 -10.98 -0.09 7.46 16 15 O -0.54 -10.12 16.43 5.56 0.09 -10.03 16 16 C 0.08 0.84 5.76 -5.19 -0.03 0.81 16 17 N -0.50 -6.08 2.10 -119.03 -0.25 -6.32 16 18 C 0.13 1.18 10.16 -16.85 -0.17 1.01 16 19 C -0.21 -1.81 10.03 -37.70 -0.38 -2.19 16 20 C 0.01 0.10 5.89 -104.93 -0.62 -0.51 16 21 C -0.13 -1.04 9.83 -39.63 -0.39 -1.43 16 22 C -0.08 -0.63 9.96 -39.88 -0.40 -1.03 16 23 C -0.14 -1.22 9.96 -39.88 -0.40 -1.62 16 24 C -0.05 -0.52 9.62 -39.66 -0.38 -0.90 16 25 C -0.15 -1.91 5.90 -104.82 -0.62 -2.53 16 26 C 0.55 8.06 7.61 -12.84 -0.10 7.96 16 27 O -0.52 -9.08 16.06 5.11 0.08 -9.00 16 28 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.40 9.41 7.90 -40.82 -0.32 9.09 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 31 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 32 H 0.41 6.21 7.44 -40.82 -0.30 5.90 16 33 H 0.13 1.39 7.35 -51.93 -0.38 1.01 16 34 H 0.12 0.81 7.96 -51.93 -0.41 0.40 16 35 H 0.16 0.92 7.98 -52.49 -0.42 0.50 16 36 H 0.15 0.82 8.06 -52.49 -0.42 0.39 16 37 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 38 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 39 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.14 1.49 7.80 -52.48 -0.41 1.08 16 LS Contribution 356.77 15.07 5.38 5.38 Total: -1.00 -35.48 356.77 -7.53 -43.02 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -4.30 Total: 13.80 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: -3.92 Total: 10.74 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 0.08 Total: -54.41 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: 0.26 Total: -33.93 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.48 -7.53 -43.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343521168.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.305 kcal (2) G-P(sol) polarization free energy of solvation -35.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds