Wall clock time and date at job start Tue Mar 31 2020 04:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86805 * 119.99633 * 2 1 4 4 H 1.48500 * 109.47001 * 239.99981 * 3 2 1 5 5 H 1.48496 * 109.47164 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46855 * 120.00293 * 3 2 1 7 7 C 1.38950 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99755 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99824 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99728 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00221 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99830 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47148 * 179.97438 * 12 10 9 14 14 C 1.34773 * 119.99969 * 179.72251 * 13 12 10 15 15 O 1.21559 * 120.00339 * 0.02562 * 14 13 12 16 16 C 1.47836 * 120.00044 * 179.97438 * 14 13 12 17 17 N 1.32855 * 119.78059 * 0.02562 * 16 14 13 18 18 C 1.31378 * 121.69799 * 179.97438 * 17 16 14 19 19 C 1.38765 * 121.06168 * 0.02562 * 18 17 16 20 20 C 1.38301 * 119.44780 * 359.97438 * 19 18 17 21 21 C 1.39337 * 118.44111 * 359.73272 * 20 19 18 22 22 O 1.35644 * 120.54450 * 180.28706 * 21 20 19 23 23 C 1.42898 * 117.00188 * 0.26566 * 22 21 20 24 24 C 1.52992 * 109.47486 * 180.02562 * 23 22 21 25 25 F 1.39902 * 109.47288 * 300.00165 * 24 23 22 26 26 F 1.39898 * 109.47261 * 60.00241 * 24 23 22 27 27 H 0.96994 * 120.00439 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00112 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.47545 * 60.00214 * 12 10 9 30 30 H 1.08998 * 109.47669 * 300.00156 * 12 10 9 31 31 H 0.97005 * 119.99811 * 0.02562 * 13 12 10 32 32 H 1.07995 * 119.46788 * 179.97438 * 18 17 16 33 33 H 1.08003 * 120.27392 * 179.97438 * 19 18 17 34 34 H 1.08001 * 120.77840 * 180.02562 * 20 19 18 35 35 H 1.08998 * 109.47137 * 300.00618 * 23 22 21 36 36 H 1.09006 * 109.46730 * 59.99694 * 23 22 21 37 37 H 1.08999 * 109.47135 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 7 2.1960 -5.9764 -0.0027 14 6 1.7467 -7.2471 0.0024 15 8 0.5516 -7.4693 0.0069 16 6 2.7074 -8.3707 0.0013 17 7 4.0126 -8.1230 -0.0041 18 6 4.8993 -9.0924 -0.0048 19 6 4.5054 -10.4230 -0.0003 20 6 3.1576 -10.7331 0.0055 21 6 2.2362 -9.6878 0.0123 22 8 0.9041 -9.9432 0.0240 23 6 0.5067 -11.3158 0.0348 24 6 -1.0206 -11.4045 0.0464 25 9 -1.5162 -10.7666 1.1887 26 9 -1.5328 -10.7798 -1.0958 27 1 -0.4850 0.8400 0.0004 28 1 0.3534 -2.3906 -0.0016 29 1 0.6176 -4.9205 -0.8924 30 1 0.6169 -4.9209 0.8875 31 1 3.1497 -5.7991 -0.0022 32 1 5.9516 -8.8499 -0.0097 33 1 5.2452 -11.2099 -0.0013 34 1 2.8270 -11.7612 0.0095 35 1 0.8924 -11.8127 -0.8554 36 1 0.9061 -11.8027 0.9245 37 1 -1.3237 -12.4515 0.0551 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343544167.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:12 Heat of formation + Delta-G solvation = -168.049591 kcal Electronic energy + Delta-G solvation = -27116.850735 eV Core-core repulsion = 22530.814730 eV Total energy + Delta-G solvation = -4586.036005 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.102 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -49.16949 -47.20361 -41.15510 -39.13235 -38.53897 -37.88790 -34.36069 -33.60402 -32.63437 -31.73653 -31.29572 -29.98678 -27.71256 -25.17357 -24.59630 -23.68329 -22.68090 -20.57536 -19.54472 -19.03432 -18.22641 -17.81162 -17.80526 -17.62720 -17.13232 -16.29262 -16.12803 -15.78061 -15.35114 -15.15501 -14.95766 -14.66215 -14.35633 -14.22770 -13.93795 -13.91296 -13.53780 -13.51035 -13.28110 -13.24538 -12.79912 -12.29107 -12.07279 -11.95431 -11.82919 -11.56788 -11.40632 -11.04788 -10.45342 -10.25951 -10.20944 -10.17761 -9.63047 -9.55451 -8.85456 -8.58090 -8.53693 -8.02454 -6.44345 -3.86104 0.43810 0.89424 2.40076 2.83211 3.19216 3.24258 3.26489 3.32204 3.35628 3.71278 3.73387 3.83733 3.96461 4.08553 4.16435 4.22551 4.35915 4.37821 4.61477 4.68131 4.86861 4.89959 4.97271 5.23839 5.24022 5.53097 5.58571 5.97828 6.01654 6.05418 6.16252 6.73791 6.79197 7.49569 7.52698 7.98385 7.99737 8.51951 8.55920 9.11862 9.47162 9.95765 10.72691 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.016227 B = 0.002595 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.144160 B =10787.002673 C =12327.001742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.304 4.304 8 H 0.105 0.895 9 N -0.551 5.551 10 C 0.430 3.570 11 O -0.593 6.593 12 C 0.108 3.892 13 N -0.689 5.689 14 C 0.564 3.436 15 O -0.520 6.520 16 C 0.059 3.941 17 N -0.413 5.413 18 C 0.063 3.937 19 C -0.110 4.110 20 C -0.177 4.177 21 C 0.133 3.867 22 O -0.258 6.258 23 C -0.006 4.006 24 C 0.277 3.723 25 F -0.193 7.193 26 F -0.193 7.193 27 H 0.274 0.726 28 H 0.396 0.604 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.420 0.580 32 H 0.168 0.832 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.007 -28.292 0.059 28.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.186 5.186 10 C 0.215 3.785 11 O -0.479 6.479 12 C -0.019 4.019 13 N -0.343 5.343 14 C 0.347 3.653 15 O -0.396 6.396 16 C -0.080 4.080 17 N -0.125 5.125 18 C -0.098 4.098 19 C -0.130 4.130 20 C -0.203 4.203 21 C 0.082 3.918 22 O -0.168 6.168 23 C -0.083 4.083 24 C 0.223 3.777 25 F -0.175 7.175 26 F -0.175 7.175 27 H 0.084 0.916 28 H 0.230 0.770 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.260 0.740 32 H 0.185 0.815 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.823 -27.172 0.056 27.318 hybrid contribution 0.105 -0.178 0.007 0.206 sum 2.928 -27.349 0.063 27.506 Atomic orbital electron populations 1.69609 1.05987 1.28537 1.49519 1.25313 0.95654 0.99866 0.96915 0.85877 0.78757 0.80221 0.79126 1.19804 1.20907 1.19810 1.19686 0.93441 0.82033 1.48180 0.87734 1.41778 1.09459 1.04407 1.62928 1.19737 0.88318 0.84961 0.85445 1.90511 1.13650 1.86787 1.56973 1.21000 0.91846 0.85683 1.03407 1.45529 1.12305 1.03923 1.72554 1.17557 0.87171 0.82309 0.78229 1.90858 1.14750 1.84281 1.49683 1.20794 0.90812 0.90585 1.05808 1.67746 1.00257 1.36809 1.07648 1.22802 0.99729 0.88160 0.99113 1.22205 0.95674 0.98465 0.96671 1.21692 0.93752 0.98866 1.06025 1.19976 0.83625 0.93857 0.94313 1.86506 1.18907 1.24460 1.86891 1.24188 0.94968 0.84485 1.04642 1.21905 0.89327 0.94173 0.72256 1.93059 1.88927 1.84842 1.50644 1.93058 1.88358 1.85379 1.50666 0.91602 0.77030 0.89644 0.89640 0.74034 0.81534 0.83829 0.83742 0.88813 0.88805 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.50 9.68 -14.93 -0.14 -8.65 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 9 N -0.55 -14.18 5.29 -10.96 -0.06 -14.24 16 10 C 0.43 10.41 7.85 -10.99 -0.09 10.33 16 11 O -0.59 -15.99 15.24 5.54 0.08 -15.91 16 12 C 0.11 2.17 6.15 -5.19 -0.03 2.14 16 13 N -0.69 -13.29 5.52 -62.43 -0.34 -13.63 16 14 C 0.56 10.52 7.80 -12.34 -0.10 10.42 16 15 O -0.52 -10.87 15.14 -16.64 -0.25 -11.12 16 16 C 0.06 0.91 6.76 -82.88 -0.56 0.35 16 17 N -0.41 -5.77 9.54 -9.71 -0.09 -5.87 16 18 C 0.06 0.60 11.17 -17.55 -0.20 0.41 16 19 C -0.11 -0.78 10.10 -39.36 -0.40 -1.18 16 20 C -0.18 -1.42 9.13 -39.15 -0.36 -1.78 16 21 C 0.13 1.66 6.71 -38.56 -0.26 1.40 16 22 O -0.26 -3.40 8.09 -40.58 -0.33 -3.73 16 23 C -0.01 -0.04 4.98 37.15 0.19 0.14 16 24 C 0.28 2.13 5.63 37.15 0.21 2.34 16 25 F -0.19 -2.24 17.28 2.25 0.04 -2.20 16 26 F -0.19 -2.24 17.28 2.25 0.04 -2.20 16 27 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.40 9.80 7.90 -40.82 -0.32 9.48 16 29 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 30 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 31 H 0.42 8.28 6.76 -40.82 -0.28 8.00 16 32 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 34 H 0.14 0.61 6.46 -52.49 -0.34 0.27 16 35 H 0.09 0.39 7.69 -51.93 -0.40 -0.01 16 36 H 0.09 0.39 7.71 -51.93 -0.40 -0.01 16 37 H 0.13 0.28 8.14 -51.93 -0.42 -0.15 16 LS Contribution 341.28 15.07 5.14 5.14 Total: -1.00 -36.83 341.28 -5.26 -42.09 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -3.36 Total: 12.93 kcal Atomic # 6 Polarization: 18.34 SS G_CDS: -1.83 Total: 16.51 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: 0.23 Total: -57.55 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.50 Total: -30.75 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.08 Total: -4.40 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.83 -5.26 -42.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343544167.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.958 kcal (2) G-P(sol) polarization free energy of solvation -36.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds