Wall clock time and date at job start Tue Mar 31 2020 04:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86799 * 119.99728 * 2 1 4 4 H 1.48502 * 109.47372 * 240.00070 * 3 2 1 5 5 H 1.48501 * 109.47557 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.47215 * 120.00267 * 3 2 1 7 7 C 1.38950 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00090 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99896 * 180.02562 * 9 7 2 11 11 O 1.21296 * 120.00013 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00189 * 179.97438 * 10 9 7 13 13 N 1.46495 * 109.47412 * 179.97438 * 12 10 9 14 14 C 1.34775 * 120.00317 * 180.02562 * 13 12 10 15 15 O 1.21597 * 119.99566 * 0.02562 * 14 13 12 16 16 C 1.47527 * 120.00460 * 180.02562 * 14 13 12 17 17 C 1.39993 * 120.59455 * 0.27321 * 16 14 13 18 18 C 1.38328 * 118.34897 * 180.22249 * 17 16 14 19 19 C 1.38360 * 119.45481 * 359.50597 * 18 17 16 20 20 N 1.31872 * 121.18952 * 0.25624 * 19 18 17 21 21 C 1.32243 * 121.79859 * 359.97438 * 20 19 18 22 22 O 1.35426 * 119.79609 * 180.02562 * 21 20 19 23 23 C 1.42901 * 117.00519 * 0.02562 * 22 21 20 24 24 C 1.53000 * 109.47056 * 179.97438 * 23 22 21 25 25 F 1.39892 * 109.47239 * 299.99657 * 24 23 22 26 26 F 1.39898 * 109.47116 * 60.00156 * 24 23 22 27 27 H 0.96995 * 120.00116 * 359.97438 * 1 2 3 28 28 H 0.97001 * 120.00001 * 0.02562 * 9 7 2 29 29 H 1.09009 * 109.46932 * 60.00128 * 12 10 9 30 30 H 1.09004 * 109.47232 * 300.00980 * 12 10 9 31 31 H 0.96996 * 119.99729 * 0.02562 * 13 12 10 32 32 H 1.08001 * 120.82546 * 359.97438 * 17 16 14 33 33 H 1.08002 * 120.27422 * 179.78883 * 18 17 16 34 34 H 1.08006 * 119.40669 * 180.23389 * 19 18 17 35 35 H 1.08993 * 109.46702 * 299.99795 * 23 22 21 36 36 H 1.08997 * 109.46749 * 59.99566 * 23 22 21 37 37 H 1.08996 * 109.46895 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3907 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2440 -4.8629 0.0000 13 7 2.1960 -5.9764 -0.0007 14 6 1.7468 -7.2471 -0.0009 15 8 0.5513 -7.4693 -0.0009 16 6 2.7055 -8.3684 -0.0010 17 6 4.0844 -8.1269 0.0047 18 6 4.9414 -9.2127 -0.0004 19 6 4.4173 -10.4932 -0.0006 20 7 3.1146 -10.6979 -0.0010 21 6 2.2517 -9.6957 -0.0008 22 8 0.9220 -9.9525 -0.0007 23 6 0.5264 -11.3257 -0.0003 24 6 -1.0009 -11.4163 0.0004 25 9 -1.5050 -10.7855 1.1427 26 9 -1.5060 -10.7858 -1.1418 27 1 -0.4850 0.8400 0.0004 28 1 0.3535 -2.3907 -0.0005 29 1 0.6170 -4.9209 -0.8898 30 1 0.6175 -4.9205 0.8902 31 1 3.1496 -5.7991 -0.0011 32 1 4.4696 -7.1179 0.0090 33 1 6.0109 -9.0623 0.0003 34 1 5.0872 -11.3404 -0.0008 35 1 0.9195 -11.8172 -0.8902 36 1 0.9196 -11.8168 0.8897 37 1 -1.3027 -12.4636 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343552463.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:27 Heat of formation + Delta-G solvation = -170.114096 kcal Electronic energy + Delta-G solvation = -27122.604573 eV Core-core repulsion = 22536.479044 eV Total energy + Delta-G solvation = -4586.125529 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.06838 -47.10262 -41.11323 -39.22137 -38.25283 -37.97732 -34.47968 -33.76462 -32.81938 -31.63308 -31.37426 -29.92103 -27.71825 -25.05756 -24.52756 -23.66662 -22.67505 -20.53744 -19.69965 -19.11410 -18.25013 -17.69542 -17.68738 -17.50387 -17.15692 -16.28276 -16.15135 -15.63881 -15.42240 -15.16202 -14.96482 -14.59773 -14.28149 -14.12293 -13.81723 -13.78968 -13.70984 -13.45250 -13.38517 -13.13684 -12.75960 -12.43803 -12.16880 -11.93312 -11.63407 -11.59287 -11.28964 -11.10708 -10.51040 -10.32217 -10.28183 -10.22256 -9.65303 -9.63077 -8.91665 -8.69207 -8.64258 -8.10570 -6.51435 -3.93738 0.45911 0.95165 2.46062 2.91007 3.13535 3.20059 3.22228 3.28877 3.50867 3.66036 3.74920 3.84995 3.92033 4.11195 4.19556 4.46293 4.54129 4.60643 4.77307 4.85449 4.90505 5.05237 5.08385 5.17054 5.22095 5.56019 5.77813 5.93635 5.97871 6.00964 6.07239 6.65748 6.84912 7.40344 7.45557 7.78781 7.91368 8.42188 8.46575 9.03947 9.38882 9.86492 10.65328 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.016319 B = 0.002586 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.399819 B =10826.895654 C =12357.199958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.547 5.547 10 C 0.428 3.572 11 O -0.600 6.600 12 C 0.111 3.889 13 N -0.704 5.704 14 C 0.557 3.443 15 O -0.518 6.518 16 C -0.197 4.197 17 C -0.006 4.006 18 C -0.216 4.216 19 C 0.162 3.838 20 N -0.549 5.549 21 C 0.369 3.631 22 O -0.257 6.257 23 C 0.012 3.988 24 C 0.273 3.727 25 F -0.196 7.196 26 F -0.196 7.196 27 H 0.275 0.725 28 H 0.396 0.604 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.407 0.593 32 H 0.152 0.848 33 H 0.146 0.854 34 H 0.165 0.835 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.583 -24.548 0.008 24.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.182 5.182 10 C 0.214 3.786 11 O -0.487 6.487 12 C -0.017 4.017 13 N -0.359 5.359 14 C 0.342 3.658 15 O -0.395 6.395 16 C -0.203 4.203 17 C -0.032 4.032 18 C -0.236 4.236 19 C 0.005 3.995 20 N -0.273 5.273 21 C 0.190 3.810 22 O -0.161 6.161 23 C -0.065 4.065 24 C 0.219 3.781 25 F -0.177 7.177 26 F -0.177 7.177 27 H 0.085 0.915 28 H 0.230 0.770 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.246 0.754 32 H 0.169 0.831 33 H 0.164 0.836 34 H 0.182 0.818 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.736 -25.122 0.008 25.398 hybrid contribution 0.648 1.659 0.002 1.781 sum 4.384 -23.463 0.010 23.869 Atomic orbital electron populations 1.69608 1.06017 1.28675 1.49089 1.25332 0.95663 0.99944 0.96738 0.85870 0.78778 0.80151 0.79142 1.19768 1.20843 1.19775 1.19681 0.93432 0.82002 1.48456 0.87708 1.41788 1.09527 1.04452 1.62436 1.19720 0.88265 0.84978 0.85652 1.90479 1.13719 1.86861 1.57615 1.20962 0.91767 0.85463 1.03495 1.45548 1.11481 1.04390 1.74530 1.17710 0.87976 0.82271 0.77823 1.90862 1.15348 1.84405 1.48884 1.20073 0.94571 0.92067 1.13557 1.21836 0.90834 1.00906 0.89598 1.21971 1.01747 0.92985 1.06892 1.22628 0.89691 0.97021 0.90158 1.67428 1.04856 1.34113 1.20915 1.19726 0.84050 0.88641 0.88617 1.86607 1.17537 1.25792 1.86152 1.23911 0.93336 0.83624 1.05662 1.22030 0.89839 0.94135 0.72066 1.93043 1.88731 1.85160 1.50758 1.93045 1.88698 1.85177 1.50779 0.91496 0.76969 0.89640 0.89632 0.75388 0.83070 0.83621 0.81753 0.88522 0.88530 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.96 13.05 55.50 0.72 -23.23 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.52 29.55 -169.99 -5.02 15.49 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.31 -8.31 9.68 -14.93 -0.14 -8.46 16 8 H 0.11 2.94 7.16 -52.49 -0.38 2.57 16 9 N -0.55 -13.62 5.29 -10.96 -0.06 -13.68 16 10 C 0.43 9.83 7.85 -10.99 -0.09 9.74 16 11 O -0.60 -15.13 15.24 5.54 0.08 -15.05 16 12 C 0.11 2.09 6.15 -5.20 -0.03 2.06 16 13 N -0.70 -12.11 5.48 -62.53 -0.34 -12.45 16 14 C 0.56 9.65 7.77 -12.47 -0.10 9.55 16 15 O -0.52 -10.66 15.19 -16.49 -0.25 -10.91 16 16 C -0.20 -2.77 5.90 -104.69 -0.62 -3.39 16 17 C -0.01 -0.06 9.64 -38.89 -0.37 -0.44 16 18 C -0.22 -1.72 10.09 -39.50 -0.40 -2.12 16 19 C 0.16 1.31 11.17 -17.49 -0.20 1.11 16 20 N -0.55 -6.00 9.21 -12.98 -0.12 -6.12 16 21 C 0.37 5.06 7.51 -16.61 -0.12 4.94 16 22 O -0.26 -3.78 8.10 -39.74 -0.32 -4.10 16 23 C 0.01 0.11 5.53 37.16 0.21 0.32 16 24 C 0.27 2.52 5.63 37.16 0.21 2.73 16 25 F -0.20 -2.49 17.28 2.25 0.04 -2.45 16 26 F -0.20 -2.49 17.28 2.25 0.04 -2.45 16 27 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.40 9.53 7.90 -40.82 -0.32 9.20 16 29 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 30 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.41 6.59 5.54 -40.82 -0.23 6.36 16 32 H 0.15 1.43 6.52 -52.49 -0.34 1.09 16 33 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 34 H 0.17 0.71 8.06 -52.48 -0.42 0.29 16 35 H 0.10 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.10 0.75 8.10 -51.93 -0.42 0.33 16 37 H 0.13 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 341.59 15.07 5.15 5.15 Total: -1.00 -35.25 341.59 -5.19 -40.45 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -3.36 Total: 12.71 kcal Atomic # 6 Polarization: 18.39 SS G_CDS: -1.75 Total: 16.64 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 0.20 Total: -55.48 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.49 Total: -30.06 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.08 Total: -4.90 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.25 -5.19 -40.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343552463.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.669 kcal (2) G-P(sol) polarization free energy of solvation -35.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds