Wall clock time and date at job start Tue Mar 31 2020 06:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00225 * 2 1 4 4 H 1.48500 * 109.47461 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46932 * 300.00342 * 3 2 1 6 6 H 1.48506 * 109.47038 * 59.99788 * 3 2 1 7 7 C 1.37883 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00450 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99397 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46432 * 179.97438 * 9 7 2 11 11 N 1.46507 * 109.46689 * 179.97438 * 10 9 7 12 12 S 1.65600 * 119.99662 * 164.99837 * 11 10 9 13 13 O 1.42093 * 106.40565 * 311.46060 * 12 11 10 14 14 O 1.42106 * 106.39983 * 178.53876 * 12 11 10 15 15 C 1.76198 * 107.21743 * 65.00372 * 12 11 10 16 16 C 1.39873 * 126.03692 * 269.99653 * 15 12 11 17 17 N 1.30846 * 108.20187 * 179.74476 * 16 15 12 18 18 N 1.40090 * 108.20009 * 0.40121 * 17 16 15 19 19 C 1.46502 * 126.03208 * 179.85614 * 18 17 16 20 20 C 1.53177 * 109.54366 * 264.69248 * 19 18 17 21 21 C 1.53098 * 109.21356 * 183.18424 * 20 19 18 22 22 O 1.42899 * 109.40993 * 57.57693 * 21 20 19 23 23 C 1.42898 * 114.10053 * 298.83671 * 22 21 20 24 24 C 1.53097 * 109.41405 * 61.16391 * 23 22 21 25 25 C 1.34942 * 107.92803 * 359.59444 * 18 17 16 26 26 H 0.96998 * 119.99994 * 359.97438 * 1 2 3 27 27 H 1.08992 * 109.47373 * 59.99994 * 9 7 2 28 28 H 1.08994 * 109.47010 * 299.99063 * 9 7 2 29 29 H 1.08997 * 109.47464 * 60.00446 * 10 9 7 30 30 H 1.09003 * 109.47168 * 299.99530 * 10 9 7 31 31 H 0.97000 * 120.00440 * 345.00021 * 11 10 9 32 32 H 1.08001 * 125.90000 * 359.97438 * 16 15 12 33 33 H 1.09005 * 109.61268 * 24.91256 * 19 18 17 34 34 H 1.09002 * 109.52487 * 63.24635 * 20 19 18 35 35 H 1.09004 * 109.52023 * 303.12255 * 20 19 18 36 36 H 1.08999 * 109.47354 * 177.55660 * 21 20 19 37 37 H 1.08999 * 109.48099 * 297.59428 * 21 20 19 38 38 H 1.09007 * 109.48578 * 181.14563 * 23 22 21 39 39 H 1.09003 * 109.48319 * 301.17106 * 23 22 21 40 40 H 1.09002 * 109.52138 * 62.29619 * 24 23 22 41 41 H 1.09005 * 109.52063 * 182.42027 * 24 23 22 42 42 H 1.08000 * 126.12425 * 180.22194 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5128 -4.9308 0.0012 12 16 2.2984 -6.3406 -0.3699 13 8 3.0277 -6.0914 -1.5637 14 8 1.3365 -7.3797 -0.2493 15 6 3.4936 -6.6199 0.8942 16 6 4.8171 -6.1674 0.8898 17 7 5.3893 -6.5668 1.9967 18 7 4.4491 -7.2950 2.7372 19 6 4.6784 -7.9236 4.0405 20 6 5.0513 -9.3958 3.8408 21 6 5.2113 -10.0650 5.2084 22 8 3.9979 -9.9256 5.9502 23 6 3.6250 -8.5707 6.2096 24 6 3.4012 -7.8414 4.8822 25 6 3.2934 -7.3101 2.0407 26 1 -0.4850 0.8400 0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 2.8719 -3.6044 0.8905 30 1 2.8719 -3.6043 -0.8895 31 1 0.5676 -4.9451 0.2189 32 1 5.2848 -5.5855 0.1094 33 1 5.4885 -7.4091 4.5574 34 1 5.9899 -9.4624 3.2906 35 1 4.2635 -9.8981 3.2793 36 1 5.4341 -11.1231 5.0714 37 1 6.0269 -9.5890 5.7528 38 1 2.7050 -8.5523 6.7940 39 1 4.4197 -8.0752 6.7672 40 1 2.5794 -8.3117 4.3423 41 1 3.1586 -6.7967 5.0770 42 1 2.3735 -7.7879 2.3440 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343959977.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:14 Heat of formation + Delta-G solvation = -55.288901 kcal Electronic energy + Delta-G solvation = -25977.902518 eV Core-core repulsion = 22086.429664 eV Total energy + Delta-G solvation = -3891.472854 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.66663 -39.68276 -36.87666 -35.51468 -35.33333 -35.24131 -32.72146 -31.84923 -30.87196 -30.50550 -29.09779 -25.56927 -24.46131 -24.30641 -22.54112 -21.64454 -21.11130 -20.29973 -19.18319 -18.27168 -17.18853 -16.68806 -16.67073 -16.25537 -15.66090 -15.59341 -15.42426 -15.25191 -15.05093 -14.52861 -14.11607 -14.06302 -13.87033 -13.70336 -13.19398 -13.00531 -12.53294 -12.29913 -12.02256 -11.90489 -11.78614 -11.67714 -11.65448 -11.52483 -11.25988 -11.11965 -11.08070 -10.72148 -10.59287 -10.45666 -10.29304 -9.76807 -9.57649 -9.36670 -9.23112 -8.87233 -8.40730 -6.07978 -4.11006 0.79308 1.40262 2.03510 2.23473 3.26599 3.28182 3.35965 3.39820 3.53143 3.77987 4.01090 4.10446 4.22935 4.25337 4.33633 4.41459 4.47693 4.57572 4.70396 4.79279 4.94929 4.98789 5.07470 5.10564 5.26208 5.29037 5.34129 5.40825 5.47417 5.53459 5.83935 6.23821 6.26179 6.52391 6.55812 6.56519 6.75716 7.28209 7.46628 7.57505 7.67088 7.91375 8.29281 8.95323 9.53629 11.03513 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014235 B = 0.002930 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.519078 B = 9555.162189 C =10480.483582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.017 3.983 10 C 0.120 3.880 11 N -1.112 6.112 12 S 2.724 3.276 13 O -0.962 6.962 14 O -0.979 6.979 15 C -0.808 4.808 16 C 0.137 3.863 17 N -0.294 5.294 18 N -0.358 5.358 19 C 0.155 3.845 20 C -0.170 4.170 21 C 0.066 3.934 22 O -0.379 6.379 23 C 0.068 3.932 24 C -0.174 4.174 25 C 0.177 3.823 26 H 0.261 0.739 27 H 0.026 0.974 28 H 0.023 0.977 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.415 0.585 32 H 0.200 0.800 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.057 0.943 38 H 0.107 0.893 39 H 0.058 0.942 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.543 -19.553 11.975 24.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.021 4.021 10 C -0.004 4.004 11 N -0.874 5.874 12 S 2.810 3.190 13 O -0.951 6.951 14 O -0.969 6.969 15 C -0.906 4.906 16 C -0.052 4.052 17 N -0.112 5.112 18 N -0.135 5.135 19 C 0.053 3.947 20 C -0.208 4.208 21 C -0.012 4.012 22 O -0.297 6.297 23 C -0.010 4.010 24 C -0.212 4.212 25 C 0.024 3.976 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.041 0.959 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.250 0.750 32 H 0.216 0.784 33 H 0.127 0.873 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.122 0.878 37 H 0.075 0.925 38 H 0.125 0.875 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 9.522 -20.193 12.150 25.417 hybrid contribution -0.196 1.488 0.137 1.507 sum 9.326 -18.705 12.287 24.245 Atomic orbital electron populations 1.69965 1.06082 1.26721 1.50419 1.25003 0.94873 0.99370 0.95085 0.86491 0.80137 0.83508 0.77596 1.19606 1.20916 1.21057 1.21140 0.93244 0.90525 1.51244 0.92201 1.19287 0.94088 0.90615 0.98149 1.21612 0.96002 0.82534 1.00301 1.55510 1.21318 1.22313 1.88243 1.00851 0.72591 0.72185 0.73341 1.93558 1.73903 1.85162 1.42517 1.93533 1.60295 1.55688 1.87379 1.31820 1.15205 1.23152 1.20386 1.23611 0.90779 0.95595 0.95225 1.77428 1.14342 1.13357 1.06104 1.49306 1.08275 1.39607 1.16322 1.21434 0.99969 0.93483 0.79799 1.22717 1.04260 0.94013 0.99831 1.22582 0.86943 1.01878 0.89750 1.87992 1.41780 1.25754 1.74212 1.22568 1.01652 0.82261 0.94513 1.22728 0.97160 1.03588 0.97766 1.22351 0.91841 0.93760 0.89673 0.92909 0.95545 0.95904 0.93155 0.91265 0.75042 0.78363 0.87302 0.89508 0.89921 0.87823 0.92453 0.87510 0.92360 0.89497 0.89010 0.79504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.15 9.11 -34.44 -0.31 -14.46 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.42 5.12 -27.88 -0.14 0.28 16 10 C 0.12 2.34 6.16 -4.04 -0.02 2.31 16 11 N -1.11 -18.16 6.00 -10.61 -0.06 -18.22 16 12 S 2.72 42.28 5.88 -107.50 -0.63 41.65 16 13 O -0.96 -17.69 17.34 -57.17 -0.99 -18.69 16 14 O -0.98 -16.37 17.85 -57.17 -1.02 -17.39 16 15 C -0.81 -11.14 6.14 -40.01 -0.25 -11.38 16 16 C 0.14 1.91 11.82 -17.36 -0.21 1.70 16 17 N -0.29 -4.05 12.58 30.63 0.39 -3.66 16 18 N -0.36 -4.08 3.54 -54.68 -0.19 -4.27 16 19 C 0.15 1.24 3.30 -67.74 -0.22 1.01 16 20 C -0.17 -1.15 5.74 -26.59 -0.15 -1.31 16 21 C 0.07 0.36 6.84 37.21 0.25 0.62 16 22 O -0.38 -2.76 10.76 -35.23 -0.38 -3.14 16 23 C 0.07 0.37 6.84 37.21 0.25 0.62 16 24 C -0.17 -1.12 5.13 -26.59 -0.14 -1.25 16 25 C 0.18 2.08 10.33 -17.23 -0.18 1.90 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.35 7.75 -51.93 -0.40 0.95 16 31 H 0.42 6.24 8.65 -34.47 -0.30 5.94 16 32 H 0.20 2.40 8.06 -52.49 -0.42 1.98 16 33 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.09 0.55 7.01 -51.93 -0.36 0.19 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.19 1.66 7.18 -52.49 -0.38 1.29 16 LS Contribution 364.34 15.07 5.49 5.49 Total: -1.00 -35.30 364.34 -8.96 -44.25 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.06 Total: 1.59 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -1.21 Total: -18.43 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 0.86 Total: -51.41 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -2.39 Total: -39.22 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 42.28 SS G_CDS: -0.63 Total: 41.65 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.30 -8.96 -44.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343959977.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.035 kcal (2) G-P(sol) polarization free energy of solvation -35.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds