Wall clock time and date at job start Tue Mar 31 2020 07:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47103 * 2 1 4 4 C 1.50700 * 109.47027 * 179.97438 * 3 2 1 5 5 O 1.21276 * 120.00218 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99649 * 180.02562 * 4 3 2 7 7 C 1.47050 * 122.50237 * 354.53389 * 6 4 3 8 8 S 1.83564 * 104.98369 * 175.96076 * 7 6 4 9 9 C 1.84248 * 94.85973 * 341.49076 * 8 7 6 10 10 C 1.46183 * 122.46158 * 174.48883 * 6 4 3 11 11 H 1.09005 * 109.44233 * 90.70184 * 10 6 4 12 12 C 1.50706 * 109.52760 * 330.73963 * 10 6 4 13 13 O 1.21278 * 119.99737 * 322.78390 * 12 10 6 14 14 N 1.34773 * 119.99524 * 142.78296 * 12 10 6 15 15 C 1.46509 * 119.99532 * 180.02562 * 14 12 10 16 16 C 1.50702 * 109.46903 * 180.02562 * 15 14 12 17 17 O 1.21288 * 120.00059 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99640 * 180.02562 * 16 15 14 19 19 C 1.37100 * 119.99579 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00211 * 359.97438 * 19 18 16 21 21 C 1.38956 * 119.99594 * 179.97438 * 19 18 16 22 22 N 1.31405 * 119.99988 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99623 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46937 * 90.00153 * 23 21 19 25 25 H 1.48507 * 109.46772 * 210.00135 * 23 21 19 26 26 H 1.48494 * 109.47163 * 329.99694 * 23 21 19 27 27 H 1.09003 * 109.46714 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46783 * 299.99863 * 1 2 3 29 29 H 1.08990 * 109.46935 * 60.00055 * 1 2 3 30 30 H 1.08997 * 109.47242 * 239.99965 * 2 1 3 31 31 H 1.09004 * 109.47022 * 120.00147 * 2 1 3 32 32 H 1.09009 * 109.46989 * 60.00223 * 3 2 1 33 33 H 1.08996 * 109.47607 * 299.99865 * 3 2 1 34 34 H 1.08999 * 110.33861 * 57.08381 * 7 6 4 35 35 H 1.09004 * 110.42514 * 294.88394 * 7 6 4 36 36 H 1.09000 * 111.34762 * 150.77969 * 9 8 7 37 37 H 1.09002 * 111.34440 * 275.46305 * 9 8 7 38 38 H 0.97001 * 120.00940 * 359.97438 * 14 12 10 39 39 H 1.08997 * 109.47340 * 299.99713 * 15 14 12 40 40 H 1.08996 * 109.46883 * 59.99847 * 15 14 12 41 41 H 0.97000 * 120.00071 * 359.97438 * 18 16 15 42 42 H 0.97007 * 119.99900 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1535 0.3922 0.0015 6 7 4.2209 2.6097 0.0013 7 6 3.5468 3.9113 -0.1168 8 16 4.8841 5.1561 0.0609 9 6 6.0788 3.9914 0.8424 10 6 5.6764 2.6754 0.1204 11 1 6.1231 2.6552 -0.8738 12 6 6.1705 1.4946 0.9159 13 8 5.5239 1.0836 1.8561 14 7 7.3309 0.8956 0.5826 15 6 7.8110 -0.2525 1.3557 16 6 9.1196 -0.7322 0.7826 17 8 9.6038 -0.1700 -0.1769 18 7 9.7518 -1.7859 1.3362 19 6 10.9426 -2.2219 0.8151 20 1 11.3738 -1.7213 -0.0392 21 6 11.5947 -3.3079 1.3862 22 7 11.0703 -3.9167 2.4260 23 14 13.2169 -3.9025 0.6758 24 1 14.3386 -3.1945 1.3433 25 1 13.3498 -5.3643 0.9013 26 1 13.2515 -3.6214 -0.7819 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6768 1.9563 -0.8899 34 1 2.8106 4.0301 0.6782 35 1 3.0689 4.0051 -1.0920 36 1 7.1086 4.2687 0.6170 37 1 5.9169 3.9193 1.9179 38 1 7.8479 1.2241 -0.1696 39 1 7.9566 0.0441 2.3944 40 1 7.0762 -1.0561 1.3069 41 1 9.3647 -2.2352 2.1037 42 1 11.5254 -4.6751 2.8245 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344169569.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:23 Heat of formation + Delta-G solvation = -102.297606 kcal Electronic energy + Delta-G solvation = -26006.988092 eV Core-core repulsion = 22113.476788 eV Total energy + Delta-G solvation = -3893.511304 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.85588 -39.03645 -38.03069 -36.42862 -34.62881 -34.42256 -33.66846 -31.84196 -31.34672 -28.31814 -27.95703 -27.35602 -24.83456 -23.84750 -22.14513 -20.66932 -19.74325 -19.24250 -18.16557 -17.83202 -17.55461 -17.01470 -16.15159 -15.84534 -15.51957 -15.15584 -15.09878 -14.98944 -14.43676 -14.26565 -14.10245 -13.89546 -13.75522 -13.39981 -13.30151 -13.09490 -12.74405 -12.61211 -12.20459 -12.17872 -12.00859 -11.80204 -11.62497 -11.41011 -11.12452 -11.05790 -10.96423 -10.45268 -10.31049 -9.96268 -9.77884 -9.62753 -9.15879 -8.76554 -8.62264 -8.27479 -8.09211 -6.50435 -3.92437 1.13862 1.51542 2.17929 2.47925 2.84079 3.12390 3.22087 3.26018 3.33113 3.75178 3.95803 4.11637 4.32341 4.49238 4.58992 4.61569 4.70209 4.78247 4.81675 4.90025 4.98789 5.12497 5.18212 5.20887 5.26478 5.31687 5.45501 5.73262 5.81001 5.92487 5.92869 6.02454 6.09094 6.12540 6.66969 6.86265 7.46907 7.74881 7.92048 7.93642 8.41384 8.47001 9.05437 9.40356 9.88186 10.66507 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015376 B = 0.002718 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.573052 B =10298.525452 C =11698.496250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.132 4.132 4 C 0.526 3.474 5 O -0.498 6.498 6 N -0.613 5.613 7 C 0.155 3.845 8 S -0.254 6.254 9 C -0.065 4.065 10 C 0.117 3.883 11 H 0.105 0.895 12 C 0.527 3.473 13 O -0.529 6.529 14 N -0.698 5.698 15 C 0.114 3.886 16 C 0.429 3.571 17 O -0.598 6.598 18 N -0.549 5.549 19 C -0.305 4.305 20 H 0.105 0.895 21 C 0.025 3.975 22 N -0.895 5.895 23 Si 0.933 3.067 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.269 1.269 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.133 0.867 37 H 0.110 0.890 38 H 0.409 0.591 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.396 0.604 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.998 15.277 -3.369 24.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.172 4.172 4 C 0.314 3.686 5 O -0.370 6.370 6 N -0.352 5.352 7 C -0.079 4.079 8 S -0.027 6.027 9 C -0.214 4.214 10 C 0.008 3.992 11 H 0.123 0.877 12 C 0.309 3.691 13 O -0.405 6.405 14 N -0.353 5.353 15 C -0.014 4.014 16 C 0.215 3.785 17 O -0.485 6.485 18 N -0.184 5.184 19 C -0.434 4.434 20 H 0.123 0.877 21 C -0.177 4.177 22 N -0.535 5.535 23 Si 0.760 3.240 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.193 1.193 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.151 0.849 37 H 0.128 0.872 38 H 0.247 0.753 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.230 0.770 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.682 15.726 -3.515 24.672 hybrid contribution 0.761 -1.469 0.163 1.662 sum -17.921 14.257 -3.351 23.144 Atomic orbital electron populations 1.21780 0.95369 1.02089 1.01620 1.21309 0.95282 0.94371 1.03998 1.21705 0.90651 1.00654 1.04173 1.20676 0.90460 0.82124 0.75365 1.90796 1.69609 1.30133 1.46445 1.48223 1.04861 1.06018 1.76112 1.23909 0.96016 0.82314 1.05693 1.88260 1.14944 1.19019 1.80489 1.24718 1.01903 0.91445 1.03360 1.21709 0.82467 0.94427 1.00629 0.87723 1.19715 0.81058 0.83515 0.84781 1.90688 1.55770 1.64257 1.29769 1.45493 1.22786 1.32137 1.34838 1.20927 0.95782 0.89151 0.95527 1.19733 0.87197 0.84393 0.87178 1.90488 1.68522 1.59438 1.30017 1.41793 1.20643 1.26617 1.29317 1.19730 0.97108 1.12510 1.14067 0.87675 1.25329 1.00005 0.96361 0.96040 1.69617 1.39894 1.22186 1.21786 0.85812 0.81034 0.77719 0.79459 1.20267 1.20792 1.19308 0.92281 0.92694 0.92764 0.91123 0.90854 0.88751 0.88986 0.88257 0.87623 0.84871 0.87197 0.75275 0.89962 0.89661 0.77033 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.11 -1.06 5.22 -26.73 -0.14 -1.20 16 3 C -0.13 -1.11 4.64 -27.89 -0.13 -1.24 16 4 C 0.53 6.75 6.93 -10.98 -0.08 6.67 16 5 O -0.50 -8.77 13.17 -17.55 -0.23 -9.00 16 6 N -0.61 -6.73 3.13 -168.86 -0.53 -7.26 16 7 C 0.15 1.13 6.86 60.15 0.41 1.54 16 8 S -0.25 -2.19 23.33 -107.50 -2.51 -4.69 16 9 C -0.06 -0.61 7.04 38.43 0.27 -0.34 16 10 C 0.12 1.39 3.25 -67.97 -0.22 1.17 16 11 H 0.11 1.15 8.08 -51.93 -0.42 0.73 16 12 C 0.53 8.52 5.07 -10.98 -0.06 8.46 16 13 O -0.53 -10.19 14.80 -17.55 -0.26 -10.45 16 14 N -0.70 -12.00 5.53 -61.47 -0.34 -12.34 16 15 C 0.11 2.19 6.15 -5.19 -0.03 2.16 16 16 C 0.43 10.05 7.85 -10.98 -0.09 9.96 16 17 O -0.60 -15.45 15.24 5.55 0.08 -15.36 16 18 N -0.55 -13.87 5.29 -10.96 -0.06 -13.93 16 19 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 20 H 0.11 3.00 7.16 -52.49 -0.38 2.63 16 21 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 22 N -0.89 -24.18 13.05 55.50 0.72 -23.45 16 23 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 31 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 32 H 0.09 0.65 8.06 -51.92 -0.42 0.23 16 33 H 0.09 0.53 8.11 -51.93 -0.42 0.11 16 34 H 0.10 0.57 7.98 -51.93 -0.41 0.16 16 35 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.11 1.09 8.10 -51.93 -0.42 0.67 16 38 H 0.41 6.79 7.39 -40.82 -0.30 6.49 16 39 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 40 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 41 H 0.40 9.67 7.90 -40.82 -0.32 9.35 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 366.80 15.07 5.53 5.53 Total: -1.00 -34.46 366.80 -8.57 -43.03 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -6.03 Total: 13.66 kcal Atomic # 6 Polarization: 18.50 SS G_CDS: 0.07 Total: 18.58 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: -0.20 Total: -56.99 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -0.41 Total: -34.81 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: -2.19 SS G_CDS: -2.51 Total: -4.69 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.46 -8.57 -43.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344169569.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.264 kcal (2) G-P(sol) polarization free energy of solvation -34.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds