Wall clock time and date at job start Tue Mar 31 2020 06:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38785 * 119.85467 * 2 1 4 4 C 1.37734 * 120.73329 * 179.97438 * 3 2 1 5 5 C 1.39280 * 119.96785 * 0.02562 * 4 3 2 6 6 N 1.37803 * 120.52988 * 180.02562 * 5 4 3 7 7 H 0.96993 * 118.59597 * 359.93404 * 6 5 4 8 8 C 1.33959 * 122.80341 * 179.97438 * 6 5 4 9 9 C 1.37938 * 122.20810 * 359.97438 * 8 6 5 10 10 C 1.47135 * 120.55387 * 179.97438 * 9 8 6 11 11 O 1.21643 * 120.00096 * 180.02562 * 10 9 8 12 12 N 1.34773 * 120.00294 * 0.02912 * 10 9 8 13 13 C 1.46495 * 120.00455 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.47055 * 179.97438 * 13 12 10 15 15 O 1.21292 * 120.00548 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99748 * 180.02562 * 14 13 12 17 17 C 1.37098 * 120.00190 * 180.02562 * 16 14 13 18 18 H 1.08003 * 119.99706 * 359.97438 * 17 16 14 19 19 C 1.38951 * 120.00374 * 179.97438 * 17 16 14 20 20 N 1.31411 * 119.99636 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00063 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47152 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.46913 * 119.99983 * 21 19 17 24 24 H 1.48500 * 109.46838 * 239.99708 * 21 19 17 25 25 C 1.47152 * 118.89483 * 0.02562 * 9 8 6 26 26 O 1.21852 * 121.41431 * 179.97438 * 25 9 8 27 27 C 1.40501 * 119.19134 * 359.97438 * 5 4 3 28 28 C 1.37712 * 119.85762 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.46616 * 89.99971 * 1 2 3 30 30 H 1.08992 * 109.47237 * 209.99810 * 1 2 3 31 31 H 1.08997 * 109.46969 * 330.00146 * 1 2 3 32 32 H 1.08006 * 119.63721 * 359.72309 * 3 2 1 33 33 H 1.07998 * 120.01865 * 179.97438 * 4 3 2 34 34 H 1.08002 * 118.89379 * 179.97438 * 8 6 5 35 35 H 0.97003 * 119.99530 * 359.97438 * 12 10 9 36 36 H 1.08997 * 109.47224 * 299.99688 * 13 12 10 37 37 H 1.09004 * 109.46686 * 59.99818 * 13 12 10 38 38 H 0.97000 * 120.00140 * 359.97438 * 16 14 13 39 39 H 0.97002 * 119.99757 * 180.02562 * 20 19 17 40 40 H 1.07999 * 120.19558 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.2037 0.0000 4 6 3.5751 1.2248 0.0005 5 6 4.2892 0.0290 0.0005 6 7 5.6672 0.0366 0.0016 7 1 6.1268 0.8908 0.0013 8 6 6.3992 -1.0853 0.0021 9 6 5.8234 -2.3388 0.0022 10 6 6.6626 -3.5474 0.0023 11 8 6.1442 -4.6478 0.0019 12 7 8.0056 -3.4353 0.0028 13 6 8.8412 -4.6385 0.0035 14 6 10.2947 -4.2408 0.0034 15 8 10.6025 -3.0675 0.0024 16 7 11.2528 -5.1887 0.0034 17 6 12.5752 -4.8269 0.0038 18 1 12.8491 -3.7822 0.0038 19 6 13.5629 -5.8042 0.0043 20 7 13.2294 -7.0753 0.0049 21 14 15.3647 -5.3112 0.0043 22 1 15.4726 -3.8302 0.0030 23 1 16.0267 -5.8552 1.2170 24 1 16.0269 -5.8564 -1.2079 25 6 4.3559 -2.4471 0.0011 26 8 3.7991 -3.5310 0.0006 27 6 3.5875 -1.1882 0.0005 28 6 2.1926 -1.1943 0.0005 29 1 -0.3633 0.0000 -1.0278 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6496 2.1342 -0.0045 33 1 4.1010 2.1681 0.0001 34 1 7.4763 -1.0057 0.0025 35 1 8.4190 -2.5577 0.0028 36 1 8.6260 -5.2298 0.8935 37 1 8.6267 -5.2302 -0.8865 38 1 11.0067 -6.1270 0.0038 39 1 13.9190 -7.7576 0.0057 40 1 1.6535 -2.1301 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345113104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:37 Heat of formation + Delta-G solvation = -68.519541 kcal Electronic energy + Delta-G solvation = -26183.397013 eV Core-core repulsion = 22155.906484 eV Total energy + Delta-G solvation = -4027.490529 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.35804 -39.41287 -38.28450 -37.94363 -37.56122 -34.40056 -33.68223 -32.80050 -31.89145 -31.40236 -30.86684 -27.58833 -27.40113 -24.89993 -23.97342 -23.49674 -22.43724 -20.74210 -19.68469 -18.86274 -18.57506 -17.97893 -17.81884 -16.50506 -15.81119 -15.55195 -15.50432 -15.25868 -15.06904 -14.93168 -14.68415 -14.43675 -14.23568 -13.97279 -13.95273 -13.60295 -13.47258 -13.34588 -12.97193 -12.58615 -12.23974 -12.14943 -12.04000 -11.78868 -11.65601 -11.64055 -11.14976 -10.42080 -10.33350 -9.96636 -9.65482 -9.52562 -9.38820 -9.31726 -8.71565 -8.63746 -8.10824 -7.98366 -6.51856 -3.94029 0.40344 0.47136 1.33485 2.41356 2.54404 3.09487 3.21088 3.26244 3.31035 3.33952 3.73303 3.87190 3.92237 4.10086 4.19652 4.33574 4.51894 4.57485 4.62324 4.83264 4.90462 5.02584 5.13694 5.17063 5.23870 5.33485 5.50417 5.53377 5.58002 5.61324 5.91735 6.02701 6.03470 6.09177 6.17496 6.21428 6.52812 6.60439 6.75138 7.45401 7.82598 7.90319 7.91921 8.44180 8.62594 9.03818 9.39307 9.86635 10.65035 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.033444 B = 0.002085 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.031486 B =13426.961797 C =14243.547190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.121 4.121 3 C -0.062 4.062 4 C -0.164 4.164 5 C 0.176 3.824 6 N -0.596 5.596 7 H 0.422 0.578 8 C 0.211 3.789 9 C -0.322 4.322 10 C 0.573 3.427 11 O -0.524 6.524 12 N -0.714 5.714 13 C 0.112 3.888 14 C 0.430 3.570 15 O -0.602 6.602 16 N -0.549 5.549 17 C -0.305 4.305 18 H 0.106 0.894 19 C 0.025 3.975 20 N -0.893 5.893 21 Si 0.933 3.067 22 H -0.268 1.268 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.432 3.568 26 O -0.448 6.448 27 C -0.177 4.177 28 C -0.033 4.033 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.173 0.827 35 H 0.402 0.598 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.397 0.603 39 H 0.274 0.726 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.613 19.064 -0.021 28.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.122 4.122 3 C -0.081 4.081 4 C -0.184 4.184 5 C 0.075 3.925 6 N -0.203 5.203 7 H 0.259 0.741 8 C 0.078 3.922 9 C -0.334 4.334 10 C 0.360 3.640 11 O -0.400 6.400 12 N -0.369 5.369 13 C -0.016 4.016 14 C 0.215 3.785 15 O -0.489 6.489 16 N -0.183 5.183 17 C -0.435 4.435 18 H 0.124 0.876 19 C -0.178 4.178 20 N -0.533 5.533 21 Si 0.760 3.240 22 H -0.192 1.192 23 H -0.206 1.206 24 H -0.206 1.206 25 C 0.313 3.687 26 O -0.325 6.325 27 C -0.181 4.181 28 C -0.051 4.051 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.190 0.810 35 H 0.240 0.760 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.230 0.770 39 H 0.084 0.916 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.977 18.202 -0.021 27.773 hybrid contribution 1.476 0.494 -0.006 1.556 sum -19.501 18.695 -0.027 27.015 Atomic orbital electron populations 1.20765 0.90430 1.03070 1.02567 1.19907 0.96713 0.92605 1.03001 1.20978 0.93166 0.97968 0.95958 1.20688 0.94614 0.95689 1.07425 1.17899 0.82273 0.94474 0.97884 1.40829 1.04567 1.09299 1.65640 0.74085 1.22170 0.97364 0.85566 0.87109 1.21921 0.96066 0.92104 1.23294 1.17321 0.81271 0.88207 0.77207 1.90844 1.73041 1.26833 1.49276 1.45576 1.05110 1.10357 1.75888 1.20921 0.89620 0.87635 1.03420 1.19755 0.86534 0.86730 0.85444 1.90458 1.82664 1.18060 1.57745 1.41812 1.05741 1.08313 1.62439 1.19770 0.80478 0.94977 1.48239 0.87629 1.25341 1.00879 0.94753 0.96815 1.69627 1.34888 0.99565 1.49231 0.85753 0.81501 0.78954 0.77831 1.19177 1.20619 1.20624 1.19329 0.86938 0.87702 0.74778 1.90747 1.72950 1.29538 1.39230 1.20298 0.94884 0.93192 1.09688 1.21039 0.91850 0.98715 0.93510 0.91028 0.91218 0.91408 0.85004 0.84735 0.81017 0.76003 0.89760 0.89764 0.76959 0.91612 0.84141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.00 36.01 0.36 -0.21 16 2 C -0.12 -0.91 5.88 -104.61 -0.62 -1.52 16 3 C -0.06 -0.37 9.66 -39.56 -0.38 -0.75 16 4 C -0.16 -0.97 9.87 -39.38 -0.39 -1.36 16 5 C 0.18 1.49 6.66 -83.94 -0.56 0.93 16 6 N -0.60 -3.90 5.21 -10.42 -0.05 -3.96 16 7 H 0.42 1.06 8.73 -40.82 -0.36 0.70 16 8 C 0.21 1.95 10.65 -16.73 -0.18 1.77 16 9 C -0.32 -4.65 6.04 -102.78 -0.62 -5.28 16 10 C 0.57 10.33 7.76 -12.65 -0.10 10.24 16 11 O -0.52 -11.70 15.55 -14.89 -0.23 -11.93 16 12 N -0.71 -12.14 5.48 -62.66 -0.34 -12.48 16 13 C 0.11 2.12 6.15 -5.20 -0.03 2.08 16 14 C 0.43 9.77 7.85 -10.99 -0.09 9.68 16 15 O -0.60 -14.88 15.24 5.55 0.08 -14.80 16 16 N -0.55 -13.58 5.29 -10.96 -0.06 -13.64 16 17 C -0.31 -8.23 9.68 -14.93 -0.14 -8.37 16 18 H 0.11 2.95 7.16 -52.48 -0.38 2.57 16 19 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 20 N -0.89 -23.88 13.05 55.50 0.72 -23.16 16 21 Si 0.93 20.39 29.55 -169.99 -5.02 15.36 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 C 0.43 6.83 7.15 -32.20 -0.23 6.60 16 26 O -0.45 -8.86 15.85 -15.07 -0.24 -9.10 16 27 C -0.18 -2.08 5.89 -104.81 -0.62 -2.70 16 28 C -0.03 -0.33 9.29 -39.31 -0.37 -0.70 16 29 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 30 H 0.07 0.35 8.08 -51.93 -0.42 -0.06 16 31 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 32 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 33 H 0.13 0.38 8.06 -52.49 -0.42 -0.05 16 34 H 0.17 1.18 6.31 -52.49 -0.33 0.84 16 35 H 0.40 6.11 5.45 -40.82 -0.22 5.89 16 36 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.40 9.52 7.90 -40.82 -0.32 9.20 16 39 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.14 1.47 7.78 -52.49 -0.41 1.06 16 LS Contribution 352.92 15.07 5.32 5.32 Total: -1.00 -37.39 352.92 -7.98 -45.37 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -4.10 Total: 12.03 kcal Atomic # 6 Polarization: 15.02 SS G_CDS: -4.05 Total: 10.97 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: 0.27 Total: -53.23 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -0.39 Total: -35.82 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.39 -7.98 -45.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345113104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.146 kcal (2) G-P(sol) polarization free energy of solvation -37.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds