Wall clock time and date at job start Tue Mar 31 2020 05:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34235 * 116.99512 * 2 1 4 4 O 1.20822 * 120.00009 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99733 * 179.97438 * 3 2 1 6 6 N 1.46493 * 109.47243 * 179.97438 * 5 3 2 7 7 C 1.37090 * 120.00521 * 264.45907 * 6 5 3 8 8 H 1.08005 * 120.00360 * 192.35106 * 7 6 5 9 9 C 1.38947 * 120.00148 * 12.35507 * 7 6 5 10 10 N 1.31418 * 119.99994 * 20.79852 * 9 7 6 11 11 Si 1.86803 * 120.00444 * 200.80596 * 9 7 6 12 12 H 1.48500 * 109.47022 * 84.98250 * 11 9 7 13 13 H 1.48498 * 109.47236 * 204.98229 * 11 9 7 14 14 H 1.48497 * 109.47176 * 324.98543 * 11 9 7 15 15 C 1.34784 * 119.99767 * 84.45936 * 6 5 3 16 16 O 1.21298 * 119.99536 * 359.97438 * 15 6 5 17 17 C 1.50699 * 120.00175 * 180.02562 * 15 6 5 18 18 C 1.52997 * 109.47014 * 179.97438 * 17 15 6 19 19 S 1.80998 * 109.46994 * 179.97438 * 18 17 15 20 20 C 1.76196 * 100.00120 * 179.97438 * 19 18 17 21 21 N 1.31546 * 126.45262 * 359.97438 * 20 19 18 22 22 N 1.28422 * 110.50164 * 180.02562 * 21 20 19 23 23 N 1.28904 * 110.34273 * 0.02562 * 22 21 20 24 24 N 1.35403 * 126.45387 * 180.02562 * 20 19 18 25 25 C 1.46502 * 127.38522 * 359.95963 * 24 20 19 26 26 H 1.09004 * 109.46825 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47370 * 299.99926 * 1 2 3 28 28 H 1.08998 * 109.47123 * 60.00404 * 1 2 3 29 29 H 1.09004 * 109.46730 * 60.00090 * 5 3 2 30 30 H 1.08999 * 109.47409 * 300.00141 * 5 3 2 31 31 H 0.97001 * 120.00457 * 180.02562 * 10 9 7 32 32 H 1.08992 * 109.46888 * 59.99417 * 17 15 6 33 33 H 1.09003 * 109.46902 * 299.99695 * 17 15 6 34 34 H 1.09005 * 109.47229 * 59.99986 * 18 17 15 35 35 H 1.08993 * 109.47171 * 299.99930 * 18 17 15 36 36 H 1.09003 * 109.46332 * 89.99849 * 25 24 20 37 37 H 1.08993 * 109.46908 * 210.00049 * 25 24 20 38 38 H 1.09001 * 109.47090 * 330.00626 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 4.2864 3.3040 -1.1821 8 1 4.7793 4.2650 -1.1739 9 6 3.9612 2.7004 -2.3906 10 7 3.0309 1.7731 -2.4325 11 14 4.8464 3.2067 -3.9557 12 1 6.1135 2.4418 -4.0773 13 1 3.9813 2.9209 -5.1283 14 1 5.1483 4.6598 -3.9057 15 6 4.0641 3.3588 1.1613 16 8 3.7940 2.8066 2.2070 17 6 4.4908 4.8041 1.1606 18 6 4.5007 5.3336 2.5960 19 16 5.0139 7.0693 2.5952 20 6 4.9379 7.4116 4.3219 21 7 4.5910 6.5696 5.2711 22 7 4.6417 7.1412 6.4200 23 7 5.0169 8.3679 6.2940 24 7 5.2246 8.5913 4.9216 25 6 5.6582 9.8340 4.2782 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.9563 0.7807 -0.8892 30 1 3.9557 0.7811 0.8908 31 1 2.8041 1.3513 -3.2761 32 1 3.7919 5.3889 0.5627 33 1 5.4910 4.8874 0.7353 34 1 5.1994 4.7487 3.1942 35 1 3.5004 5.2503 3.0208 36 1 4.7849 10.4319 4.0174 37 1 6.2919 10.3962 4.9640 38 1 6.2201 9.5983 3.3744 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348805236.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:22 Heat of formation + Delta-G solvation = 12.316083 kcal Electronic energy + Delta-G solvation = -25510.025759 eV Core-core repulsion = 21517.944134 eV Total energy + Delta-G solvation = -3992.081625 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.099 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.92308 -39.55207 -38.43452 -35.58404 -35.31793 -34.72784 -32.60965 -32.15650 -31.67601 -28.66165 -28.48262 -26.45943 -25.22888 -24.13422 -23.26837 -22.86354 -20.30368 -19.29263 -18.15645 -17.21040 -16.90056 -16.87323 -16.64570 -16.44486 -15.56131 -15.30563 -14.98970 -14.80394 -14.38577 -14.35753 -14.03462 -13.88879 -13.20377 -13.00737 -12.65218 -12.43493 -12.36099 -12.33506 -11.97493 -11.65813 -11.43241 -11.35742 -11.22241 -11.18681 -10.86216 -10.83355 -10.70816 -10.57503 -10.56959 -10.43475 -9.86990 -9.69049 -9.07505 -8.74050 -8.12378 -8.09290 -6.61116 -4.09366 0.62201 0.75959 1.84663 1.99629 2.15464 3.00333 3.11650 3.14063 3.39978 3.62940 3.89577 3.99729 4.00426 4.54873 4.63239 4.64535 4.88602 4.92929 5.11245 5.21357 5.25768 5.27431 5.67754 5.74931 5.77312 5.81822 5.91410 6.00496 6.13530 6.21974 6.30186 6.40296 6.66860 7.21461 7.37595 7.49465 8.10730 8.32609 8.85538 9.02664 9.23098 9.63569 10.45108 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.014699 B = 0.003191 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.385265 B = 8773.500077 C =10290.515293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.374 6.374 3 C 0.485 3.515 4 O -0.505 6.505 5 C 0.153 3.847 6 N -0.426 5.426 7 C -0.337 4.337 8 H 0.107 0.893 9 C 0.038 3.962 10 N -0.869 5.869 11 Si 0.928 3.072 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.269 1.269 15 C 0.473 3.527 16 O -0.597 6.597 17 C -0.107 4.107 18 C -0.082 4.082 19 S 0.024 5.976 20 C 0.219 3.781 21 N -0.327 5.327 22 N -0.032 5.032 23 N -0.091 5.091 24 N -0.371 5.371 25 C 0.088 3.912 26 H 0.086 0.914 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.133 0.867 30 H 0.082 0.918 31 H 0.275 0.725 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.658 8.984 2.635 10.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.291 6.291 3 C 0.327 3.673 4 O -0.390 6.390 5 C 0.027 3.973 6 N -0.144 5.144 7 C -0.464 4.464 8 H 0.125 0.875 9 C -0.167 4.167 10 N -0.507 5.507 11 Si 0.754 3.246 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.194 1.194 15 C 0.260 3.740 16 O -0.482 6.482 17 C -0.149 4.149 18 C -0.231 4.231 19 S 0.251 5.749 20 C -0.165 4.165 21 N -0.183 5.183 22 N -0.028 5.028 23 N -0.079 5.079 24 N -0.170 5.170 25 C -0.054 4.054 26 H 0.105 0.895 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.151 0.849 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.112 0.888 37 H 0.122 0.878 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.262 9.292 3.451 10.790 hybrid contribution -0.170 0.115 -0.899 0.923 sum 4.093 9.408 2.551 10.572 Atomic orbital electron populations 1.22948 0.78658 1.01903 1.01646 1.86464 1.21708 1.35377 1.85555 1.24020 0.92345 0.80553 0.70377 1.90513 1.66621 1.36447 1.45396 1.20661 0.87138 0.85380 1.04128 1.43404 1.56712 1.08339 1.05960 1.19685 1.38137 1.06361 0.82211 0.87546 1.25224 0.95074 0.96810 0.99633 1.69870 1.25795 1.26996 1.28059 0.85925 0.79165 0.79167 0.80320 1.20010 1.20964 1.19396 1.19722 0.82830 0.87512 0.83923 1.90595 1.55808 1.70097 1.31750 1.21143 1.04218 0.96086 0.93481 1.23563 1.07572 0.89710 1.02229 1.85648 1.83664 1.17864 0.87766 1.27879 0.99360 0.86045 1.03244 1.75069 1.23399 1.26067 0.93799 1.77876 1.09196 0.99311 1.16428 1.82432 1.20854 1.12526 0.92054 1.51485 1.48782 1.11030 1.05740 1.22235 1.02306 0.82066 0.98763 0.89531 0.93080 0.92639 0.84950 0.89971 0.91478 0.88388 0.88781 0.87444 0.87426 0.88834 0.87785 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.56 101.05 1.07 1.81 16 2 O -0.37 -7.95 10.57 -39.27 -0.41 -8.36 16 3 C 0.49 11.77 6.25 36.00 0.23 12.00 16 4 O -0.50 -13.68 16.00 -18.75 -0.30 -13.98 16 5 C 0.15 3.53 5.15 -5.20 -0.03 3.50 16 6 N -0.43 -10.03 2.17 -116.10 -0.25 -10.28 16 7 C -0.34 -7.79 9.23 -14.94 -0.14 -7.93 16 8 H 0.11 2.24 6.48 -52.48 -0.34 1.90 16 9 C 0.04 0.87 4.95 -17.47 -0.09 0.78 16 10 N -0.87 -21.30 9.26 55.50 0.51 -20.79 16 11 Si 0.93 17.98 29.60 -169.99 -5.03 12.95 16 12 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 13 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 14 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 15 C 0.47 10.63 7.44 -10.98 -0.08 10.54 16 16 O -0.60 -14.86 15.66 5.54 0.09 -14.77 16 17 C -0.11 -1.85 4.11 -27.88 -0.11 -1.97 16 18 C -0.08 -1.29 4.52 37.16 0.17 -1.12 16 19 S 0.02 0.29 21.79 -107.50 -2.34 -2.05 16 20 C 0.22 3.08 8.15 -89.17 -0.73 2.35 16 21 N -0.33 -5.59 11.57 30.50 0.35 -5.24 16 22 N -0.03 -0.55 13.38 60.35 0.81 0.26 16 23 N -0.09 -1.35 13.93 60.35 0.84 -0.51 16 24 N -0.37 -4.45 4.09 -68.10 -0.28 -4.73 16 25 C 0.09 0.54 11.40 59.85 0.68 1.22 16 26 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 28 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 29 H 0.13 3.05 6.04 -51.93 -0.31 2.73 16 30 H 0.08 1.78 7.60 -51.93 -0.39 1.39 16 31 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 32 H 0.10 1.67 8.07 -51.93 -0.42 1.25 16 33 H 0.09 1.43 7.74 -51.93 -0.40 1.03 16 34 H 0.11 1.77 8.10 -51.91 -0.42 1.35 16 35 H 0.11 1.89 8.10 -51.92 -0.42 1.47 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.10 0.46 7.85 -51.93 -0.41 0.05 16 LS Contribution 350.08 15.07 5.28 5.28 Total: -1.00 -32.66 350.08 -4.14 -36.80 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -4.37 Total: 4.24 kcal Atomic # 6 Polarization: 20.22 SS G_CDS: 0.97 Total: 21.19 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 1.98 Total: -41.29 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -0.63 Total: -37.11 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -2.34 Total: -2.05 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.66 -4.14 -36.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348805236.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.112 kcal (2) G-P(sol) polarization free energy of solvation -32.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds