Wall clock time and date at job start Tue Mar 31 2020 05:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36085 * 116.99770 * 2 1 4 4 C 1.38717 * 120.06085 * 269.97187 * 3 2 1 5 5 F 1.35096 * 120.00033 * 0.02562 * 4 3 2 6 6 C 1.38429 * 119.99842 * 180.02562 * 4 3 2 7 7 C 1.38469 * 120.12280 * 0.02562 * 6 4 3 8 8 F 1.35101 * 119.93669 * 179.97438 * 7 6 4 9 9 C 1.38374 * 120.12865 * 359.72701 * 7 6 4 10 10 C 1.38767 * 119.99647 * 0.54687 * 9 7 6 11 11 N 1.40170 * 120.06261 * 179.72221 * 10 9 7 12 12 C 1.34773 * 119.99732 * 34.66028 * 11 10 9 13 13 O 1.21595 * 120.00235 * 355.53216 * 12 11 10 14 14 N 1.34779 * 120.00146 * 175.26189 * 12 11 10 15 15 C 1.46496 * 120.00323 * 180.27138 * 14 12 11 16 16 C 1.50699 * 109.47313 * 179.97438 * 15 14 12 17 17 O 1.21298 * 119.99794 * 0.02562 * 16 15 14 18 18 N 1.34770 * 120.00031 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99968 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99783 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00039 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99795 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99995 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47453 * 89.99838 * 23 21 19 25 25 H 1.48507 * 109.47035 * 209.99689 * 23 21 19 26 26 H 1.48504 * 109.47085 * 329.99410 * 23 21 19 27 27 H 1.08997 * 109.46873 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46860 * 299.99996 * 1 2 3 29 29 H 1.09000 * 109.47051 * 60.00429 * 1 2 3 30 30 H 1.07993 * 119.93461 * 179.97438 * 6 4 3 31 31 H 1.08003 * 120.00268 * 180.30053 * 9 7 6 32 32 H 0.96999 * 120.00005 * 214.65695 * 11 10 9 33 33 H 0.97002 * 119.99351 * 0.26773 * 14 12 11 34 34 H 1.08994 * 109.47082 * 300.00398 * 15 14 12 35 35 H 1.09009 * 109.47077 * 60.00073 * 15 14 12 36 36 H 0.96999 * 120.00405 * 0.02562 * 18 16 15 37 37 H 0.97002 * 119.99697 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 2.3628 1.8314 -1.2006 5 9 2.0567 1.2306 -2.3713 6 6 2.9917 3.0646 -1.1991 7 6 3.3070 3.6824 -0.0006 8 9 3.9212 4.8857 -0.0036 9 6 2.9896 3.0721 1.2000 10 6 2.3643 1.8333 1.2045 11 7 2.0474 1.2112 2.4200 12 6 1.6767 1.9548 3.4810 13 8 1.6952 3.1685 3.4092 14 7 1.2802 1.3533 4.6201 15 6 0.8716 2.1616 5.7715 16 6 0.4770 1.2538 6.9079 17 8 0.5323 0.0500 6.7697 18 7 0.0638 1.7796 8.0780 19 6 -0.2946 0.9537 9.1121 20 1 -0.2454 -0.1181 8.9890 21 6 -0.7211 1.4957 10.3183 22 7 -1.0641 0.7041 11.3095 23 14 -0.8068 3.3496 10.5308 24 1 -2.1505 3.8330 10.1236 25 1 -0.5667 3.6962 11.9548 26 1 0.2288 3.9934 9.6833 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.2375 3.5453 -2.1344 31 1 3.2321 3.5580 2.1335 32 1 2.0948 0.2454 2.4973 33 1 1.2654 0.3851 4.6774 34 1 1.7017 2.7952 6.0835 35 1 0.0222 2.7860 5.4941 36 1 0.0200 2.7422 8.1887 37 1 -1.3622 1.0825 12.1515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349779158.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:21 Heat of formation + Delta-G solvation = -149.175326 kcal Electronic energy + Delta-G solvation = -27123.163388 eV Core-core repulsion = 22537.945832 eV Total energy + Delta-G solvation = -4585.217556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.35238 -49.27736 -41.12597 -39.59133 -38.51865 -37.47768 -34.98555 -34.70194 -33.92731 -31.88556 -30.37854 -30.07418 -27.85457 -27.03062 -24.66046 -23.56956 -22.87332 -21.12394 -19.81041 -19.19927 -19.01852 -18.38034 -18.21312 -17.53973 -16.63210 -16.57440 -16.24069 -15.85919 -15.76458 -15.58091 -15.38528 -15.16395 -14.97787 -14.82684 -14.67887 -14.38635 -14.20880 -13.76659 -13.23505 -12.95844 -12.62006 -12.55360 -12.37384 -12.25430 -12.19571 -11.95668 -11.29922 -10.80703 -10.70167 -10.57857 -10.22888 -10.12703 -9.77417 -9.21879 -8.97627 -8.87717 -8.58643 -8.38150 -6.47493 -4.00635 0.40294 0.57012 2.18266 2.61525 2.93820 2.97580 2.99200 3.08010 3.29518 3.46805 3.54292 3.90619 3.94956 3.97897 4.42493 4.44721 4.54974 4.75007 4.94667 4.98375 5.06997 5.16419 5.29772 5.39507 5.43960 5.54263 5.64991 5.68707 5.71183 5.95628 6.27355 6.33543 6.60695 6.93878 7.36774 7.73592 7.92681 8.27072 8.37759 8.74228 9.21920 9.54075 10.64422 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.021740 B = 0.002423 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.658311 B =11552.829490 C =12544.677464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.017 3.983 4 C 0.134 3.866 5 F -0.121 7.121 6 C -0.202 4.202 7 C 0.149 3.851 8 F -0.125 7.125 9 C -0.158 4.158 10 C 0.219 3.781 11 N -0.679 5.679 12 C 0.706 3.294 13 O -0.576 6.576 14 N -0.713 5.713 15 C 0.124 3.876 16 C 0.436 3.564 17 O -0.579 6.579 18 N -0.573 5.573 19 C -0.312 4.312 20 H 0.122 0.878 21 C 0.046 3.954 22 N -0.872 5.872 23 Si 0.880 3.120 24 H -0.268 1.268 25 H -0.274 1.274 26 H -0.267 1.267 27 H 0.101 0.899 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.153 0.847 31 H 0.169 0.831 32 H 0.418 0.582 33 H 0.412 0.588 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.375 0.625 37 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.052 4.571 -23.550 24.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.237 6.237 3 C -0.031 4.031 4 C 0.113 3.887 5 F -0.100 7.100 6 C -0.222 4.222 7 C 0.128 3.872 8 F -0.103 7.103 9 C -0.179 4.179 10 C 0.121 3.879 11 N -0.327 5.327 12 C 0.406 3.594 13 O -0.453 6.453 14 N -0.370 5.370 15 C -0.004 4.004 16 C 0.221 3.779 17 O -0.464 6.464 18 N -0.211 5.211 19 C -0.440 4.440 20 H 0.140 0.860 21 C -0.159 4.159 22 N -0.510 5.510 23 Si 0.705 3.295 24 H -0.194 1.194 25 H -0.199 1.199 26 H -0.192 1.192 27 H 0.119 0.881 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.171 0.829 31 H 0.186 0.814 32 H 0.256 0.744 33 H 0.250 0.750 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.208 0.792 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.038 4.641 -23.344 24.554 hybrid contribution -0.290 0.774 0.255 0.865 sum 5.748 5.416 -23.089 24.402 Atomic orbital electron populations 1.23141 0.78273 1.03897 1.01134 1.86144 1.20537 1.22934 1.94107 1.18225 1.04392 0.90517 0.89995 1.17182 0.99603 0.91221 0.80674 1.91536 1.90800 1.82788 1.44848 1.20901 1.06100 0.95959 0.99289 1.16984 0.95311 0.81982 0.92896 1.91555 1.79883 1.41616 1.97280 1.21332 1.01077 0.96175 0.99324 1.17100 0.94671 0.92210 0.83930 1.42502 1.70548 1.11087 1.08544 1.15778 0.78307 0.85293 0.80044 1.90932 1.60416 1.11408 1.82574 1.44750 1.69302 1.11562 1.11365 1.20907 1.01328 0.93177 0.85011 1.19563 0.85238 0.88946 0.84108 1.90549 1.59015 1.14825 1.82005 1.42105 1.58592 1.08275 1.12083 1.19437 1.41522 0.93338 0.89716 0.86038 1.25077 0.96815 0.98671 0.95295 1.69616 1.42357 1.35205 1.03870 0.86667 0.79121 0.84654 0.79025 1.19352 1.19924 1.19187 0.88071 0.93075 0.93229 0.82899 0.81404 0.74414 0.74974 0.89428 0.89485 0.79184 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.13 101.05 1.13 1.36 16 2 O -0.32 -3.24 9.84 -20.01 -0.20 -3.44 16 3 C 0.02 0.18 5.75 -39.06 -0.22 -0.05 16 4 C 0.13 1.32 7.30 -39.33 -0.29 1.03 16 5 F -0.12 -1.23 17.11 2.25 0.04 -1.19 16 6 C -0.20 -1.79 10.00 -39.43 -0.39 -2.18 16 7 C 0.15 1.51 7.29 -39.45 -0.29 1.22 16 8 F -0.13 -1.32 17.26 2.25 0.04 -1.28 16 9 C -0.16 -1.79 8.68 -39.34 -0.34 -2.13 16 10 C 0.22 2.42 6.32 -83.50 -0.53 1.89 16 11 N -0.68 -7.35 5.19 -14.12 -0.07 -7.43 16 12 C 0.71 9.58 8.41 -86.92 -0.73 8.85 16 13 O -0.58 -9.23 13.76 5.28 0.07 -9.16 16 14 N -0.71 -10.04 5.53 -66.42 -0.37 -10.41 16 15 C 0.12 1.94 6.15 -5.20 -0.03 1.91 16 16 C 0.44 8.97 7.85 -10.99 -0.09 8.88 16 17 O -0.58 -13.83 15.24 5.54 0.08 -13.75 16 18 N -0.57 -12.69 5.09 -10.96 -0.06 -12.74 16 19 C -0.31 -8.30 10.16 -14.93 -0.15 -8.46 16 20 H 0.12 3.70 7.39 -52.49 -0.39 3.31 16 21 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 22 N -0.87 -24.32 13.96 55.50 0.77 -23.54 16 23 Si 0.88 18.39 27.74 -169.99 -4.71 13.68 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 H -0.27 -5.06 6.52 56.52 0.37 -4.70 16 27 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 31 H 0.17 2.13 6.19 -52.48 -0.32 1.81 16 32 H 0.42 3.69 8.58 -40.82 -0.35 3.34 16 33 H 0.41 5.67 7.46 -40.82 -0.30 5.37 16 34 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.09 1.26 8.14 -51.92 -0.42 0.84 16 36 H 0.37 7.28 5.76 -40.82 -0.24 7.05 16 37 H 0.28 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 338.46 15.07 5.10 5.10 Total: -1.00 -31.21 338.46 -4.64 -35.85 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -3.31 Total: 14.89 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: -2.03 Total: 13.43 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.28 Total: -54.13 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.04 Total: -26.35 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.08 Total: -2.48 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -4.71 Total: 13.68 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.21 -4.64 -35.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349779158.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.326 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds