Wall clock time and date at job start Tue Mar 31 2020 05:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36032 * 116.99946 * 2 1 4 4 C 1.38664 * 119.98577 * 359.97438 * 3 2 1 5 5 C 1.38284 * 120.01088 * 179.97438 * 4 3 2 6 6 F 1.35102 * 120.00522 * 180.02562 * 5 4 3 7 7 C 1.39017 * 119.98960 * 0.02562 * 5 4 3 8 8 N 1.40267 * 120.01981 * 179.97438 * 7 5 4 9 9 C 1.34784 * 120.00368 * 204.80340 * 8 7 5 10 10 O 1.21598 * 119.99508 * 5.63009 * 9 8 7 11 11 N 1.34776 * 120.00050 * 185.63367 * 9 8 7 12 12 C 1.46497 * 119.99637 * 179.97438 * 11 9 8 13 13 C 1.50705 * 109.46808 * 179.97438 * 12 11 9 14 14 O 1.21288 * 119.99769 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99620 * 179.97438 * 13 12 11 16 16 C 1.37102 * 119.99753 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00011 * 0.02562 * 16 15 13 18 18 C 1.38943 * 119.99939 * 179.97438 * 16 15 13 19 19 N 1.31420 * 120.00108 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00330 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47135 * 89.99878 * 20 18 16 22 22 H 1.48496 * 109.47590 * 209.99728 * 20 18 16 23 23 H 1.48499 * 109.47068 * 330.00038 * 20 18 16 24 24 C 1.38761 * 119.96763 * 359.97438 * 7 5 4 25 25 C 1.38320 * 119.98863 * 359.74492 * 24 7 5 26 26 F 1.35094 * 119.99800 * 180.25403 * 25 24 7 27 27 H 1.08997 * 109.47555 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46647 * 59.99676 * 1 2 3 29 29 H 1.09007 * 109.46947 * 300.00422 * 1 2 3 30 30 H 1.07994 * 119.99713 * 359.95549 * 4 3 2 31 31 H 0.97004 * 119.99940 * 24.79364 * 8 7 5 32 32 H 0.96997 * 120.00084 * 359.97438 * 11 9 8 33 33 H 1.09000 * 109.47245 * 299.99823 * 12 11 9 34 34 H 1.09006 * 109.47140 * 59.99898 * 12 11 9 35 35 H 0.96995 * 120.00546 * 0.02562 * 15 13 12 36 36 H 0.96993 * 120.00027 * 180.02562 * 19 18 16 37 37 H 1.08007 * 120.00704 * 180.02562 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2121 0.0000 4 6 1.2910 2.3748 -0.0005 5 6 1.9183 3.6072 0.0000 6 9 1.1821 4.7400 0.0000 7 6 3.3065 3.6803 0.0005 8 7 3.9434 4.9301 0.0005 9 6 5.1937 5.0494 -0.4886 10 8 5.7308 4.0981 -1.0227 11 7 5.8484 6.2229 -0.3858 12 6 7.2075 6.3523 -0.9170 13 6 7.7094 7.7530 -0.6770 14 8 7.0015 8.5631 -0.1169 15 7 8.9451 8.1049 -1.0839 16 6 9.4014 9.3793 -0.8661 17 1 8.7709 10.1010 -0.3681 18 6 10.6756 9.7420 -1.2850 19 7 11.1132 10.9634 -1.0758 20 14 11.7666 8.4937 -2.1457 21 1 11.5354 8.5613 -3.6111 22 1 13.1908 8.7971 -1.8549 23 1 11.4408 7.1303 -1.6556 24 6 4.0619 2.5164 0.0011 25 6 3.4334 1.2842 0.0064 26 9 4.1686 0.1509 0.0121 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 0.2126 2.3179 -0.0017 31 1 3.4840 5.7085 0.3525 32 1 5.4198 6.9817 0.0400 33 1 7.8630 5.6402 -0.4156 34 1 7.2002 6.1478 -1.9877 35 1 9.5113 7.4570 -1.5315 36 1 12.0025 11.2167 -1.3686 37 1 5.1405 2.5724 0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349787594.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:28 Heat of formation + Delta-G solvation = -147.509707 kcal Electronic energy + Delta-G solvation = -26794.990683 eV Core-core repulsion = 22209.845354 eV Total energy + Delta-G solvation = -4585.145329 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.32500 -49.02610 -40.91397 -40.03628 -38.65932 -37.60934 -34.71503 -34.66594 -33.88951 -31.85927 -30.79520 -29.82346 -28.11160 -27.17903 -24.50560 -23.57498 -22.79558 -21.07165 -19.77337 -19.25182 -18.98729 -18.63778 -18.05871 -17.46267 -16.89949 -16.68835 -16.06609 -15.91307 -15.66181 -15.48317 -15.35311 -15.16240 -15.01069 -14.80970 -14.69314 -14.30046 -14.15075 -13.72894 -13.20957 -12.84716 -12.62538 -12.57472 -12.34251 -12.29589 -12.22986 -12.03221 -11.73468 -11.27486 -10.68049 -10.41005 -10.21534 -10.10547 -9.75120 -9.22199 -9.08440 -8.85147 -8.35891 -8.06622 -6.45293 -3.98390 0.54025 0.69760 2.24805 2.68418 2.76282 2.96257 3.01194 3.09952 3.19725 3.49587 3.66640 3.76505 3.97071 4.00107 4.14916 4.45568 4.50104 4.65689 4.68870 4.94518 5.02881 5.09242 5.20965 5.37659 5.42291 5.55588 5.66054 5.69911 5.72595 5.93791 6.34066 6.39262 6.63585 6.78742 7.39161 7.77413 7.95015 8.30910 8.40434 8.76463 9.24246 9.56607 10.66625 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.027627 B = 0.002196 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.248552 B =12749.044969 C =13636.814297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.305 6.305 3 C 0.098 3.902 4 C -0.195 4.195 5 C 0.093 3.907 6 F -0.129 7.129 7 C 0.145 3.855 8 N -0.679 5.679 9 C 0.707 3.293 10 O -0.576 6.576 11 N -0.713 5.713 12 C 0.124 3.876 13 C 0.436 3.564 14 O -0.579 6.579 15 N -0.574 5.574 16 C -0.311 4.311 17 H 0.122 0.878 18 C 0.046 3.954 19 N -0.872 5.872 20 Si 0.880 3.120 21 H -0.268 1.268 22 H -0.274 1.274 23 H -0.266 1.266 24 C -0.106 4.106 25 C 0.089 3.911 26 F -0.124 7.124 27 H 0.104 0.896 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.154 0.846 31 H 0.415 0.585 32 H 0.412 0.588 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.375 0.625 36 H 0.276 0.724 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.898 -20.124 1.906 28.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.218 6.218 3 C 0.051 3.949 4 C -0.215 4.215 5 C 0.070 3.930 6 F -0.108 7.108 7 C 0.047 3.953 8 N -0.326 5.326 9 C 0.407 3.593 10 O -0.454 6.454 11 N -0.370 5.370 12 C -0.005 4.005 13 C 0.222 3.778 14 O -0.464 6.464 15 N -0.211 5.211 16 C -0.440 4.440 17 H 0.140 0.860 18 C -0.159 4.159 19 N -0.511 5.511 20 Si 0.705 3.295 21 H -0.194 1.194 22 H -0.199 1.199 23 H -0.192 1.192 24 C -0.127 4.127 25 C 0.068 3.932 26 F -0.102 7.102 27 H 0.123 0.877 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.171 0.829 31 H 0.252 0.748 32 H 0.250 0.750 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.208 0.792 36 H 0.087 0.913 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -19.501 -20.343 1.774 28.236 hybrid contribution 0.293 0.151 -0.366 0.492 sum -19.208 -20.193 1.408 27.905 Atomic orbital electron populations 1.23169 0.77756 1.04524 1.01677 1.86192 1.21840 1.25005 1.88730 1.18604 0.90493 0.85213 1.00623 1.20762 1.01230 0.89619 1.09915 1.16932 0.86761 0.82479 1.06822 1.91516 1.76588 1.48582 1.94083 1.17038 0.88797 0.85770 1.03651 1.42447 1.15776 1.09339 1.65048 1.15747 0.80400 0.83930 0.79208 1.90891 1.67516 1.38094 1.48891 1.44754 1.16632 1.12631 1.62990 1.20911 0.82264 0.97027 1.00253 1.19575 0.83606 0.88867 0.85756 1.90544 1.56561 1.52385 1.46910 1.42105 1.13486 1.12986 1.52522 1.19436 1.00248 0.86820 1.37467 0.86049 1.25079 0.96904 0.96474 0.97441 1.69617 1.19050 1.17352 1.45080 0.86664 0.81192 0.81013 0.80586 1.19351 1.19940 1.19179 1.21228 1.03377 0.87824 1.00262 1.16699 0.85541 0.82970 1.07984 1.91530 1.76469 1.48165 1.94034 0.87731 0.92249 0.92247 0.82851 0.74835 0.75000 0.89398 0.89436 0.79178 0.91316 0.80315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.30 -2.80 10.36 -19.84 -0.21 -3.01 16 3 C 0.10 0.97 6.69 -39.19 -0.26 0.71 16 4 C -0.20 -1.64 9.01 -39.41 -0.35 -1.99 16 5 C 0.09 0.91 7.30 -39.28 -0.29 0.62 16 6 F -0.13 -1.25 16.81 2.25 0.04 -1.21 16 7 C 0.15 1.64 6.44 -83.51 -0.54 1.11 16 8 N -0.68 -7.68 5.33 -14.13 -0.08 -7.75 16 9 C 0.71 10.00 8.37 -86.91 -0.73 9.27 16 10 O -0.58 -9.52 13.51 5.28 0.07 -9.45 16 11 N -0.71 -10.41 5.53 -66.41 -0.37 -10.78 16 12 C 0.12 1.99 6.15 -5.19 -0.03 1.95 16 13 C 0.44 9.14 7.85 -10.98 -0.09 9.06 16 14 O -0.58 -14.06 15.24 5.55 0.08 -13.97 16 15 N -0.57 -12.88 5.09 -10.96 -0.06 -12.93 16 16 C -0.31 -8.38 10.16 -14.93 -0.15 -8.53 16 17 H 0.12 3.73 7.39 -52.48 -0.39 3.34 16 18 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 19 N -0.87 -24.52 13.96 55.50 0.77 -23.74 16 20 Si 0.88 18.60 27.74 -169.99 -4.71 13.89 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.27 -5.13 6.52 56.52 0.37 -4.76 16 24 C -0.11 -1.28 8.69 -39.36 -0.34 -1.62 16 25 C 0.09 1.04 7.30 -39.32 -0.29 0.75 16 26 F -0.12 -1.58 17.11 2.25 0.04 -1.54 16 27 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.21 7.66 -51.92 -0.40 -0.18 16 29 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 30 H 0.15 0.86 6.29 -52.49 -0.33 0.53 16 31 H 0.42 3.73 8.47 -40.82 -0.35 3.39 16 32 H 0.41 5.86 7.46 -40.82 -0.30 5.56 16 33 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.37 7.40 5.76 -40.82 -0.24 7.16 16 36 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.18 2.42 5.79 -52.48 -0.30 2.12 16 LS Contribution 333.89 15.07 5.03 5.03 Total: -1.00 -32.45 333.89 -4.69 -37.15 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -3.14 Total: 14.79 kcal Atomic # 6 Polarization: 15.71 SS G_CDS: -2.17 Total: 13.53 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.28 Total: -55.20 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.05 Total: -26.43 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.08 Total: -2.75 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -4.71 Total: 13.89 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.45 -4.69 -37.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349787594.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.364 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds