Wall clock time and date at job start Tue Mar 31 2020 05:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47380 * 321.55548 * 3 2 1 5 5 C 1.37094 * 120.00196 * 263.79792 * 4 3 2 6 6 H 1.07998 * 119.99948 * 142.47857 * 5 4 3 7 7 C 1.38951 * 119.99915 * 322.47705 * 5 4 3 8 8 N 1.31421 * 119.99596 * 157.59144 * 7 5 4 9 9 Si 1.86792 * 120.00363 * 337.59310 * 7 5 4 10 10 H 1.48497 * 109.47242 * 95.70200 * 9 7 5 11 11 H 1.48505 * 109.47170 * 215.70464 * 9 7 5 12 12 H 1.48507 * 109.46974 * 335.70506 * 9 7 5 13 13 C 1.34773 * 119.99652 * 83.80156 * 4 3 2 14 14 O 1.21293 * 119.99958 * 179.97438 * 13 4 3 15 15 C 1.50700 * 120.00277 * 359.97438 * 13 4 3 16 16 O 1.42897 * 109.47574 * 180.02562 * 15 13 4 17 17 C 1.35968 * 117.00370 * 180.02562 * 16 15 13 18 18 C 1.38738 * 119.98430 * 359.97110 * 17 16 15 19 19 C 1.38079 * 120.03501 * 180.02562 * 18 17 16 20 20 C 1.39006 * 119.92795 * 359.71402 * 19 18 17 21 21 C 1.38686 * 119.95930 * 0.56017 * 20 19 18 22 22 C 1.38078 * 120.06074 * 359.45965 * 21 20 19 23 23 C 1.50669 * 119.80586 * 179.70067 * 21 20 19 24 24 C 1.52895 * 109.54178 * 325.80767 * 23 21 20 25 25 C 1.50490 * 109.91516 * 48.63527 * 24 23 21 26 26 O 1.21289 * 119.62378 * 144.76779 * 25 24 23 27 27 N 1.34566 * 120.75602 * 324.74354 * 25 24 23 28 28 H 1.09006 * 109.46615 * 201.55732 * 3 2 1 29 29 H 1.09003 * 109.46962 * 81.56113 * 3 2 1 30 30 H 0.96997 * 119.99619 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47310 * 59.99774 * 15 13 4 32 32 H 1.09007 * 109.47132 * 300.00443 * 15 13 4 33 33 H 1.08004 * 119.98565 * 0.02562 * 18 17 16 34 34 H 1.07996 * 120.02063 * 179.97438 * 19 18 17 35 35 H 1.07994 * 120.00864 * 180.26478 * 22 21 20 36 36 H 1.08994 * 109.46258 * 205.77848 * 23 21 20 37 37 H 1.09002 * 109.44502 * 85.81703 * 23 21 20 38 38 H 1.09007 * 109.39234 * 288.50128 * 24 23 21 39 39 H 1.08998 * 109.40105 * 168.77477 * 24 23 21 40 40 H 0.97004 * 119.78141 * 180.85424 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -1.0809 0.8588 5 6 3.4462 -0.8196 2.1584 6 1 3.2266 -1.5405 2.9320 7 6 4.0828 0.3728 2.4804 8 7 4.0296 0.8349 3.7096 9 14 5.0140 1.3189 1.1664 10 1 4.1344 2.3711 0.5969 11 1 6.2154 1.9507 1.7689 12 1 5.4327 0.3871 0.0885 13 6 3.2032 -2.3328 0.3710 14 8 3.6084 -3.2282 1.0819 15 6 2.8187 -2.6202 -1.0575 16 8 3.0179 -4.0078 -1.3345 17 6 2.7169 -4.4362 -2.5893 18 6 2.2393 -3.5380 -3.5327 19 6 1.9328 -3.9720 -4.8072 20 6 2.1089 -5.3087 -5.1457 21 6 2.5810 -6.2063 -4.1998 22 6 2.8868 -5.7713 -2.9255 23 6 2.7642 -7.6557 -4.5685 24 6 1.6817 -8.0705 -5.5654 25 6 1.5951 -7.0607 -6.6778 26 8 1.3429 -7.4306 -7.8050 27 7 1.7939 -5.7519 -6.4361 28 1 2.9708 0.9567 0.3776 29 1 2.9713 -0.1500 -1.0166 30 1 4.4737 1.6675 3.9342 31 1 3.4374 -2.0231 -1.7274 32 1 1.7695 -2.3666 -1.2094 33 1 2.1072 -2.4987 -3.2702 34 1 1.5607 -3.2728 -5.5412 35 1 3.2584 -6.4701 -2.1908 36 1 2.6874 -8.2709 -3.6721 37 1 3.7463 -7.7937 -5.0206 38 1 0.7211 -8.1284 -5.0534 39 1 1.9280 -9.0473 -5.9816 40 1 1.7225 -5.1117 -7.1614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355270430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:01 Heat of formation + Delta-G solvation = -32.762544 kcal Electronic energy + Delta-G solvation = -26774.178392 eV Core-core repulsion = 22748.238403 eV Total energy + Delta-G solvation = -4025.939989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.28671 -40.01527 -39.03286 -37.78126 -36.39414 -34.97250 -34.68902 -34.29445 -32.40553 -30.63386 -29.44145 -28.19653 -27.86032 -25.16400 -24.57628 -23.05782 -22.71733 -20.03669 -19.16055 -18.70042 -18.33287 -17.88224 -17.27414 -16.87086 -16.37615 -16.25246 -15.88196 -15.72598 -15.22117 -15.02830 -14.37818 -14.21452 -13.98974 -13.95026 -13.80772 -13.43353 -13.39780 -13.12224 -12.88464 -12.67089 -12.55960 -12.52107 -12.13716 -12.00932 -11.74837 -11.69210 -11.45899 -11.08974 -11.00729 -10.66863 -10.36160 -10.21229 -10.14725 -9.41041 -9.15197 -8.90497 -8.23546 -7.85045 -6.63378 -4.26426 0.93807 1.03388 2.24113 2.69590 2.74999 2.78995 2.95977 3.03011 3.04691 3.10194 3.31364 3.47750 3.89779 4.02673 4.17804 4.26708 4.30477 4.44548 4.55753 4.72601 4.75551 4.81177 4.89566 5.01285 5.03932 5.12029 5.19522 5.33613 5.34426 5.40466 5.50885 5.56431 5.64082 5.78498 5.88339 6.10776 6.30095 6.45524 6.84764 7.13782 7.34808 7.67855 7.78067 7.92658 8.16559 8.63777 8.97342 9.32124 10.47629 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.024019 B = 0.002567 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.442863 B =10906.828742 C =11274.148957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.201 3.799 3 C 0.175 3.825 4 N -0.457 5.457 5 C -0.325 4.325 6 H 0.112 0.888 7 C 0.064 3.936 8 N -0.848 5.848 9 Si 0.860 3.140 10 H -0.268 1.268 11 H -0.277 1.277 12 H -0.255 1.255 13 C 0.476 3.524 14 O -0.521 6.521 15 C 0.039 3.961 16 O -0.281 6.281 17 C 0.123 3.877 18 C -0.184 4.184 19 C -0.105 4.105 20 C 0.109 3.891 21 C -0.082 4.082 22 C -0.116 4.116 23 C -0.077 4.077 24 C -0.138 4.138 25 C 0.521 3.479 26 O -0.537 6.537 27 N -0.660 5.660 28 H 0.120 0.880 29 H 0.108 0.892 30 H 0.279 0.721 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.141 0.859 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.703 -8.066 -18.294 20.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.119 4.119 3 C 0.048 3.952 4 N -0.182 5.182 5 C -0.451 4.451 6 H 0.130 0.870 7 C -0.144 4.144 8 N -0.482 5.482 9 Si 0.685 3.315 10 H -0.195 1.195 11 H -0.203 1.203 12 H -0.179 1.179 13 C 0.263 3.737 14 O -0.398 6.398 15 C -0.041 4.041 16 O -0.193 6.193 17 C 0.076 3.924 18 C -0.203 4.203 19 C -0.125 4.125 20 C 0.014 3.986 21 C -0.084 4.084 22 C -0.135 4.135 23 C -0.115 4.115 24 C -0.178 4.178 25 C 0.310 3.690 26 O -0.413 6.413 27 N -0.305 5.305 28 H 0.137 0.863 29 H 0.126 0.874 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.159 0.841 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -2.165 -8.914 -18.076 20.270 hybrid contribution 0.778 1.529 -0.861 1.920 sum -1.387 -7.385 -18.937 20.373 Atomic orbital electron populations 1.81095 1.13083 1.08182 1.08842 1.30006 0.95752 0.93337 0.92785 1.19641 0.81199 0.96596 0.97732 1.43499 1.57600 1.04968 1.12143 1.19045 1.38940 1.05979 0.81184 0.87013 1.25386 0.95903 0.96665 0.96425 1.69740 1.39031 1.20160 1.19280 0.87202 0.81162 0.80215 0.82916 1.19529 1.20322 1.17861 1.19735 0.82515 0.84246 0.87234 1.90647 1.46354 1.43571 1.59232 1.22756 1.01778 0.81527 0.97990 1.86227 1.81124 1.25536 1.26367 1.19061 0.95536 0.93381 0.84423 1.21149 1.05235 1.00244 0.93650 1.20565 1.01548 0.93720 0.96700 1.17466 1.02631 0.93539 0.84947 1.19189 1.01104 0.95300 0.92835 1.20102 1.03912 0.93569 0.95903 1.20446 0.99067 0.92060 0.99884 1.21688 1.02155 0.98628 0.95296 1.20750 0.75016 0.83017 0.90264 1.90776 1.47505 1.79211 1.23831 1.43536 1.68662 1.08840 1.09428 0.86312 0.87430 0.91051 0.89495 0.90252 0.84691 0.85118 0.84071 0.88611 0.89578 0.87757 0.87281 0.75323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.09 18.54 42.15 0.78 -7.31 16 2 C 0.20 3.44 15.00 -20.76 -0.31 3.12 16 3 C 0.18 2.85 4.27 -6.83 -0.03 2.82 16 4 N -0.46 -9.58 2.15 -117.93 -0.25 -9.84 16 5 C -0.33 -8.23 9.36 -14.93 -0.14 -8.37 16 6 H 0.11 3.26 7.91 -52.49 -0.42 2.85 16 7 C 0.06 1.58 5.26 -17.46 -0.09 1.49 16 8 N -0.85 -22.36 13.96 55.50 0.77 -21.58 16 9 Si 0.86 17.00 25.05 -169.99 -4.26 12.74 16 10 H -0.27 -4.75 6.69 56.52 0.38 -4.37 16 11 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 12 H -0.25 -4.74 7.11 56.52 0.40 -4.33 16 13 C 0.48 9.85 7.64 -10.99 -0.08 9.77 16 14 O -0.52 -13.15 16.37 -14.36 -0.24 -13.39 16 15 C 0.04 0.58 3.83 36.01 0.14 0.72 16 16 O -0.28 -4.50 9.67 -39.55 -0.38 -4.88 16 17 C 0.12 1.56 6.69 -39.22 -0.26 1.29 16 18 C -0.18 -1.91 9.03 -39.45 -0.36 -2.27 16 19 C -0.10 -0.93 9.92 -39.36 -0.39 -1.32 16 20 C 0.11 1.01 6.51 -83.66 -0.54 0.46 16 21 C -0.08 -0.76 5.65 -104.53 -0.59 -1.35 16 22 C -0.12 -1.26 9.63 -39.46 -0.38 -1.64 16 23 C -0.08 -0.52 5.99 -27.95 -0.17 -0.69 16 24 C -0.14 -0.96 6.07 -28.04 -0.17 -1.13 16 25 C 0.52 5.17 7.72 -11.18 -0.09 5.08 16 26 O -0.54 -7.20 17.91 5.55 0.10 -7.10 16 27 N -0.66 -5.73 5.37 -9.96 -0.05 -5.78 16 28 H 0.12 1.99 3.61 -51.93 -0.19 1.81 16 29 H 0.11 1.19 6.70 -51.93 -0.35 0.85 16 30 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.09 1.00 6.93 -51.93 -0.36 0.64 16 32 H 0.08 1.06 7.00 -51.93 -0.36 0.70 16 33 H 0.14 1.20 6.29 -52.48 -0.33 0.87 16 34 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.10 0.49 8.06 -51.93 -0.42 0.07 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.41 2.94 8.84 -40.82 -0.36 2.58 16 LS Contribution 346.67 15.07 5.22 5.22 Total: -1.00 -33.37 346.67 -5.82 -39.19 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -4.06 Total: 4.75 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: -3.47 Total: 7.98 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 1.25 Total: -44.51 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.52 Total: -25.37 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -4.26 Total: 12.74 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.37 -5.82 -39.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355270430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.428 kcal (2) G-P(sol) polarization free energy of solvation -33.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds