Wall clock time and date at job start Tue Mar 31 2020 07:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47351 * 2 1 4 4 N 1.46496 * 109.47313 * 184.52085 * 3 2 1 5 5 C 1.36934 * 120.00010 * 275.27430 * 4 3 2 6 6 H 1.08003 * 120.00021 * 137.92215 * 5 4 3 7 7 C 1.38809 * 120.00055 * 317.92307 * 5 4 3 8 8 N 1.31621 * 120.00174 * 162.23169 * 7 5 4 9 9 Si 1.86801 * 120.00041 * 342.22465 * 7 5 4 10 10 H 1.48502 * 109.46971 * 95.28684 * 9 7 5 11 11 H 1.48503 * 109.47299 * 215.28818 * 9 7 5 12 12 H 1.48500 * 109.46901 * 335.29041 * 9 7 5 13 13 S 1.65603 * 120.00127 * 95.27665 * 4 3 2 14 14 O 1.42100 * 106.40522 * 156.46174 * 13 4 3 15 15 O 1.42100 * 106.40271 * 23.53791 * 13 4 3 16 16 C 1.76206 * 107.21495 * 269.99845 * 13 4 3 17 17 C 1.39831 * 126.07012 * 269.97016 * 16 13 4 18 18 C 1.37867 * 107.08883 * 179.78177 * 17 16 13 19 19 C 1.46678 * 126.23716 * 180.23415 * 18 17 16 20 20 O 1.21695 * 119.99972 * 185.84691 * 19 18 17 21 21 N 1.34774 * 120.00056 * 5.85697 * 19 18 17 22 22 C 1.46495 * 120.00383 * 184.16752 * 21 19 18 23 23 N 1.37656 * 107.53123 * 0.38822 * 18 17 16 24 24 C 1.46501 * 125.67923 * 179.87173 * 23 18 17 25 25 C 1.35451 * 126.06660 * 90.00469 * 16 13 4 26 26 H 1.08995 * 109.47478 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47399 * 300.00444 * 1 2 3 28 28 H 1.09007 * 109.47108 * 59.99901 * 1 2 3 29 29 H 1.09002 * 109.47685 * 240.00267 * 2 1 3 30 30 H 1.09000 * 109.47470 * 119.99528 * 2 1 3 31 31 H 1.08998 * 109.46973 * 64.51720 * 3 2 1 32 32 H 1.08999 * 109.46677 * 304.51955 * 3 2 1 33 33 H 0.96997 * 120.00251 * 180.02562 * 8 7 5 34 34 H 1.08003 * 126.45285 * 0.03160 * 17 16 13 35 35 H 0.97004 * 119.99352 * 4.16603 * 21 19 18 36 36 H 1.09003 * 109.47168 * 299.99939 * 22 21 19 37 37 H 1.09000 * 109.47329 * 59.99366 * 22 21 19 38 38 H 1.08994 * 109.47480 * 179.97438 * 22 21 19 39 39 H 1.09006 * 109.46996 * 271.04721 * 24 23 18 40 40 H 1.08994 * 109.47251 * 151.04752 * 24 23 18 41 41 H 1.08996 * 109.47287 * 31.04376 * 24 23 18 42 42 H 1.08005 * 125.56264 * 359.94941 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5009 1.4440 -0.1089 5 6 4.2713 1.3046 1.0146 6 1 5.1442 0.6688 0.9954 7 6 3.9305 1.9805 2.1781 8 7 4.4333 1.5979 3.3328 9 14 2.7584 3.4332 2.1052 10 1 1.3780 2.9706 2.3981 11 1 3.1643 4.4478 3.1108 12 1 2.8011 4.0360 0.7487 13 16 4.2207 1.6141 -1.5906 14 8 5.5248 2.1232 -1.3471 15 8 3.2738 2.2687 -2.4238 16 6 4.4342 -0.0036 -2.2555 17 6 5.5521 -0.8250 -2.0797 18 6 5.3041 -1.9979 -2.7606 19 6 6.2010 -3.1551 -2.8496 20 8 5.9144 -4.0931 -3.5699 21 7 7.3425 -3.1796 -2.1335 22 6 8.2824 -4.2922 -2.2910 23 7 4.0627 -1.8839 -3.3445 24 6 3.4078 -2.9049 -4.1660 25 6 3.5448 -0.6720 -3.0281 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.7443 1.9324 0.9277 32 1 1.6120 1.9791 -0.8467 33 1 4.1948 2.0700 4.1459 34 1 6.4406 -0.5871 -1.5136 35 1 7.5417 -2.4604 -1.5138 36 1 7.7866 -5.2267 -2.0282 37 1 8.6200 -4.3388 -3.3264 38 1 9.1401 -4.1388 -1.6362 39 1 3.6930 -2.7697 -5.2093 40 1 2.3263 -2.8100 -4.0697 41 1 3.7170 -3.8947 -3.8302 42 1 2.5802 -0.3001 -3.3407 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356087090.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:19 Heat of formation + Delta-G solvation = -50.163634 kcal Electronic energy + Delta-G solvation = -27329.699856 eV Core-core repulsion = 23438.449251 eV Total energy + Delta-G solvation = -3891.250606 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.41319 -39.07358 -36.50421 -36.09277 -34.86765 -34.75413 -32.91543 -32.73992 -31.26460 -29.98556 -26.76464 -26.62232 -25.90002 -23.77593 -22.57071 -21.35128 -20.98899 -19.93596 -18.60236 -18.09271 -16.91409 -16.51456 -16.24453 -15.86577 -15.70950 -15.41757 -15.06270 -14.81184 -14.22327 -14.14247 -14.00995 -13.50324 -13.32886 -13.03084 -12.95301 -12.62825 -12.52189 -12.48155 -12.39575 -12.29978 -12.02438 -11.72507 -11.16124 -11.08784 -10.96938 -10.86781 -10.68312 -10.53322 -10.36813 -10.10627 -9.98687 -9.73378 -9.34954 -9.10614 -8.78882 -8.32968 -7.98971 -6.31753 -3.97747 1.42439 1.46093 2.27112 2.54228 3.15932 3.28929 3.31315 3.33330 3.39558 4.19033 4.31058 4.60811 4.67823 4.77807 4.86730 5.03115 5.07732 5.10138 5.21556 5.31851 5.43053 5.50776 5.55827 5.58256 5.60707 5.63071 5.77887 5.97703 6.12722 6.20198 6.24412 6.30770 6.37527 6.57340 6.67670 6.80181 6.85153 7.08470 7.18648 7.32850 7.75856 8.04942 8.34280 9.17006 9.23459 10.78495 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014332 B = 0.004644 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.159518 B = 6028.034434 C = 6599.738191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.137 4.137 3 C 0.110 3.890 4 N -0.868 5.868 5 C -0.294 4.294 6 H 0.103 0.897 7 C 0.070 3.930 8 N -0.869 5.869 9 Si 0.875 3.125 10 H -0.274 1.274 11 H -0.290 1.290 12 H -0.262 1.262 13 S 2.675 3.325 14 O -0.962 6.962 15 O -1.001 7.001 16 C -0.727 4.727 17 C -0.037 4.037 18 C -0.072 4.072 19 C 0.596 3.404 20 O -0.555 6.555 21 N -0.725 5.725 22 C 0.092 3.908 23 N -0.406 5.406 24 C 0.065 3.935 25 C 0.131 3.869 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.272 0.728 34 H 0.158 0.842 35 H 0.409 0.591 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.238 -9.448 -9.861 13.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.177 4.177 3 C -0.016 4.016 4 N -0.700 5.700 5 C -0.428 4.428 6 H 0.121 0.879 7 C -0.138 4.138 8 N -0.507 5.507 9 Si 0.703 3.297 10 H -0.201 1.201 11 H -0.217 1.217 12 H -0.187 1.187 13 S 2.770 3.230 14 O -0.951 6.951 15 O -0.991 6.991 16 C -0.817 4.817 17 C -0.063 4.063 18 C -0.184 4.184 19 C 0.384 3.616 20 O -0.435 6.435 21 N -0.376 5.376 22 C -0.052 4.052 23 N -0.077 5.077 24 C -0.076 4.076 25 C -0.011 4.011 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.176 0.824 35 H 0.245 0.755 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.120 0.880 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -1.228 -9.684 -10.949 14.668 hybrid contribution -0.578 0.315 0.480 0.814 sum -1.806 -9.368 -10.469 14.164 Atomic orbital electron populations 1.21755 0.96562 1.00999 1.01592 1.21914 0.94506 0.98468 1.02769 1.21560 0.81827 0.96221 1.02000 1.52905 1.10132 1.86391 1.20537 1.18590 1.10765 1.26360 0.87083 0.87925 1.25412 0.96895 0.96373 0.95166 1.69792 1.43758 1.39122 0.97988 0.86947 0.80453 0.83495 0.78810 1.20142 1.21661 1.18660 1.03114 0.73598 0.72935 0.73338 1.93462 1.40122 1.76715 1.84834 1.93419 1.63534 1.72607 1.69550 1.31464 1.03388 1.27394 1.19493 1.21008 0.97689 0.90542 0.97065 1.20028 0.90157 0.98394 1.09792 1.16900 0.80607 0.84626 0.79438 1.90760 1.74469 1.37330 1.40930 1.45454 1.20756 1.26860 1.44521 1.21549 0.92040 0.89435 1.02172 1.44072 1.13390 1.13435 1.36834 1.22310 0.97922 0.92080 0.95255 1.21811 0.98724 0.83889 0.96684 0.93172 0.92799 0.92990 0.92715 0.90554 0.91620 0.90774 0.91749 0.82407 0.75541 0.92069 0.92213 0.90184 0.90330 0.89564 0.88028 0.79861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.15 0.37 -1.73 16 2 C -0.14 -2.35 6.23 -26.73 -0.17 -2.51 16 3 C 0.11 2.24 4.60 -4.04 -0.02 2.22 16 4 N -0.87 -19.80 2.40 -59.91 -0.14 -19.95 16 5 C -0.29 -7.59 9.30 -15.06 -0.14 -7.73 16 6 H 0.10 2.77 8.06 -52.48 -0.42 2.35 16 7 C 0.07 1.87 5.37 -17.43 -0.09 1.77 16 8 N -0.87 -24.15 13.97 55.49 0.78 -23.37 16 9 Si 0.87 20.83 24.93 -169.99 -4.24 16.59 16 10 H -0.27 -6.11 6.75 56.52 0.38 -5.73 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 13 S 2.67 58.07 5.80 -107.50 -0.62 57.44 16 14 O -0.96 -23.70 17.08 -57.17 -0.98 -24.68 16 15 O -1.00 -22.22 16.40 -57.17 -0.94 -23.16 16 16 C -0.73 -13.06 6.17 -39.98 -0.25 -13.31 16 17 C -0.04 -0.62 10.14 -39.12 -0.40 -1.01 16 18 C -0.07 -1.12 6.88 -81.98 -0.56 -1.68 16 19 C 0.60 8.65 7.77 -12.85 -0.10 8.55 16 20 O -0.55 -8.99 14.77 5.19 0.08 -8.91 16 21 N -0.72 -8.25 5.69 -68.42 -0.39 -8.64 16 22 C 0.09 0.81 10.71 59.84 0.64 1.45 16 23 N -0.41 -5.77 3.16 -120.24 -0.38 -6.15 16 24 C 0.07 0.69 10.49 59.85 0.63 1.32 16 25 C 0.13 1.98 10.28 -16.91 -0.17 1.81 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.86 7.28 -51.93 -0.38 0.48 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 31 H 0.07 1.41 3.29 -51.93 -0.17 1.24 16 32 H 0.07 1.41 6.91 -51.93 -0.36 1.05 16 33 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.16 2.39 7.49 -52.48 -0.39 1.99 16 35 H 0.41 4.04 7.77 -40.82 -0.32 3.72 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.66 8.13 -51.93 -0.42 0.24 16 41 H 0.10 1.17 6.51 -51.93 -0.34 0.83 16 42 H 0.18 2.24 8.06 -52.48 -0.42 1.82 16 LS Contribution 359.99 15.07 5.43 5.43 Total: -1.00 -34.06 359.99 -7.44 -41.50 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.76 Total: 4.76 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -0.26 Total: -10.87 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.14 Total: -58.11 kcal Atomic # 8 Polarization: -54.90 SS G_CDS: -1.84 Total: -56.74 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.24 Total: 16.59 kcal Atomic # 16 Polarization: 58.07 SS G_CDS: -0.62 Total: 57.44 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.06 -7.44 -41.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356087090.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.662 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds