Wall clock time and date at job start Tue Mar 31 2020 05:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 C 1.39665 * 120.00491 * 49.44027 * 3 2 1 5 5 C 1.37733 * 119.99257 * 180.02562 * 4 3 2 6 6 C 1.39625 * 120.00311 * 0.02562 * 5 4 3 7 7 C 1.47915 * 119.99414 * 179.97438 * 6 5 4 8 8 O 1.21551 * 119.99573 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00516 * 179.97438 * 7 6 5 10 10 C 1.46494 * 120.00464 * 179.97438 * 9 7 6 11 11 C 1.50705 * 109.47226 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99863 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99957 * 180.02562 * 11 10 9 14 14 C 1.47581 * 134.49542 * 179.97438 * 13 11 10 15 15 C 1.53937 * 86.11850 * 155.35958 * 14 13 11 16 16 O 1.42909 * 113.74622 * 269.26137 * 15 14 13 17 17 C 1.50706 * 113.74062 * 137.95556 * 15 14 13 18 18 H 1.07995 * 119.99719 * 5.45712 * 17 15 14 19 19 C 1.37875 * 119.99902 * 185.45909 * 17 15 14 20 20 N 1.31518 * 120.00380 * 10.12802 * 19 17 15 21 21 Si 1.86806 * 119.99818 * 190.13490 * 19 17 15 22 22 H 1.48496 * 109.47001 * 84.99350 * 21 19 17 23 23 H 1.48498 * 109.46906 * 204.99146 * 21 19 17 24 24 H 1.48498 * 109.46847 * 324.99304 * 21 19 17 25 25 C 1.47583 * 134.49194 * 0.02562 * 13 11 10 26 26 C 1.39625 * 120.01247 * 0.25320 * 6 5 4 27 27 C 1.37726 * 120.00564 * 359.48581 * 26 6 5 28 28 H 1.07999 * 120.01003 * 359.97438 * 4 3 2 29 29 H 1.07996 * 119.99621 * 179.97438 * 5 4 3 30 30 H 0.97002 * 119.99559 * 359.97438 * 9 7 6 31 31 H 1.09003 * 109.46825 * 60.00563 * 10 9 7 32 32 H 1.09002 * 109.47575 * 300.00221 * 10 9 7 33 33 H 1.09008 * 113.76171 * 41.05635 * 14 13 11 34 34 H 1.08995 * 113.77044 * 269.66697 * 14 13 11 35 35 H 0.96696 * 113.99844 * 183.92545 * 16 15 14 36 36 H 0.96993 * 119.99873 * 179.97438 * 20 19 17 37 37 H 1.09003 * 113.77248 * 90.33927 * 25 13 11 38 38 H 1.08994 * 113.87190 * 318.95112 * 25 13 11 39 39 H 1.08001 * 119.99574 * 179.72674 * 26 6 5 40 40 H 1.07998 * 120.00126 * 180.23068 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2668 -0.7855 -0.9189 5 6 4.6441 -0.7851 -0.9183 6 6 5.3417 0.0007 0.0011 7 6 6.8208 0.0006 0.0020 8 8 7.4289 -0.6840 -0.7975 9 7 7.4944 0.7594 0.8890 10 6 8.9593 0.7588 0.8902 11 6 9.4612 1.6823 1.9702 12 8 8.6728 2.2815 2.6704 13 7 10.7862 1.8422 2.1580 14 6 11.6104 2.6380 3.0883 15 6 12.7099 1.5880 2.8472 16 8 12.6782 0.4988 3.7718 17 6 14.0863 2.1784 2.6791 18 1 14.2402 3.2379 2.8203 19 6 15.1488 1.3658 2.3451 20 7 14.9350 0.1208 1.9790 21 14 16.8923 2.0331 2.4126 22 1 17.4164 1.9092 3.7965 23 1 17.7552 1.2581 1.4853 24 1 16.8912 3.4624 2.0098 25 6 11.9957 1.2925 1.5154 26 6 4.6433 0.7822 0.9236 27 6 3.2660 0.7863 0.9200 28 1 2.7273 -1.3943 -1.6293 29 1 5.1845 -1.3933 -1.6285 30 1 7.0091 1.3060 1.5267 31 1 9.3235 1.1006 -0.0787 32 1 9.3222 -0.2515 1.0790 33 1 11.2313 2.6505 4.1103 34 1 11.8610 3.6306 2.7142 35 1 13.4029 -0.1319 3.6615 36 1 15.6825 -0.4507 1.7436 37 1 12.3595 1.8904 0.6797 38 1 11.9263 0.2306 1.2801 39 1 5.1832 1.3866 1.6376 40 1 2.7259 1.3937 1.6311 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356546637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:26 Heat of formation + Delta-G solvation = -23.078179 kcal Electronic energy + Delta-G solvation = -26001.697317 eV Core-core repulsion = 21976.177273 eV Total energy + Delta-G solvation = -4025.520043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.66847 -39.72544 -38.87725 -37.57745 -36.76793 -34.61636 -34.09615 -32.38475 -32.15968 -31.62273 -29.57659 -27.45553 -25.50081 -25.36894 -24.49519 -23.12884 -21.02014 -20.37496 -19.44573 -18.94681 -18.01510 -17.36169 -16.69138 -16.11221 -15.83936 -15.73306 -15.27496 -15.19461 -14.96591 -14.81160 -14.40216 -14.29814 -14.15036 -14.11573 -13.52406 -13.35736 -13.22584 -12.94556 -12.63357 -12.59011 -12.43710 -12.29255 -11.99341 -11.84442 -11.61870 -11.13881 -11.09280 -10.61745 -10.39405 -10.27272 -9.82722 -9.61019 -9.53087 -9.27648 -9.23919 -8.96300 -8.51422 -8.03282 -6.46484 -4.56268 -0.07598 0.79466 2.09570 2.19039 2.71710 2.87100 2.93275 3.11733 3.20254 3.21860 3.33603 3.46875 3.49077 4.13939 4.26333 4.30236 4.41030 4.67322 4.71788 4.80805 4.88672 5.10120 5.37593 5.40579 5.42313 5.47657 5.60110 5.70536 5.80117 5.84079 6.01245 6.08360 6.18859 6.25239 6.43637 6.47541 6.62040 6.96544 6.98927 7.29843 7.54546 7.70091 7.94592 8.25795 8.45209 8.47191 9.13535 9.15800 10.59540 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.035593 B = 0.001964 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.493748 B =14256.702106 C =14755.087648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.253 3.747 3 C -0.008 4.008 4 C -0.078 4.078 5 C -0.060 4.060 6 C -0.099 4.099 7 C 0.555 3.445 8 O -0.531 6.531 9 N -0.707 5.707 10 C 0.106 3.894 11 C 0.523 3.477 12 O -0.568 6.568 13 N -0.627 5.627 14 C 0.115 3.885 15 C 0.238 3.762 16 O -0.569 6.569 17 C -0.545 4.545 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.888 5.888 21 Si 0.903 3.097 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.272 1.272 25 C 0.082 3.918 26 C -0.086 4.086 27 C -0.076 4.076 28 H 0.141 0.859 29 H 0.150 0.850 30 H 0.411 0.589 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.387 0.613 36 H 0.272 0.728 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.142 0.858 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.508 -0.615 -4.819 16.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.063 4.063 3 C -0.012 4.012 4 C -0.098 4.098 5 C -0.079 4.079 6 C -0.103 4.103 7 C 0.341 3.659 8 O -0.409 6.409 9 N -0.362 5.362 10 C -0.021 4.021 11 C 0.311 3.689 12 O -0.449 6.449 13 N -0.360 5.360 14 C -0.007 4.007 15 C 0.196 3.804 16 O -0.377 6.377 17 C -0.583 4.583 18 H 0.090 0.910 19 C -0.130 4.130 20 N -0.526 5.526 21 Si 0.730 3.270 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.196 1.196 25 C -0.040 4.040 26 C -0.105 4.105 27 C -0.096 4.096 28 H 0.159 0.841 29 H 0.167 0.833 30 H 0.250 0.750 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.238 0.762 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.160 0.840 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.845 -0.673 -4.892 18.515 hybrid contribution 1.723 0.237 0.003 1.739 sum -16.122 -0.436 -4.889 16.853 Atomic orbital electron populations 1.81281 1.12023 1.07729 1.07560 1.25684 0.92622 0.93988 0.93978 1.16162 0.84404 1.01092 0.99494 1.21175 0.93911 0.97434 0.97322 1.21243 0.93133 0.96493 0.97059 1.20194 0.93123 0.99123 0.97823 1.18183 0.86968 0.79845 0.80911 1.90815 1.69569 1.41611 1.38877 1.45632 1.06792 1.46906 1.36878 1.21034 0.80438 1.01286 0.99361 1.19936 0.81699 0.82655 0.84566 1.90615 1.54653 1.50626 1.49018 1.50189 1.03336 1.45553 1.36894 1.23509 0.87714 0.96097 0.93394 1.19831 0.91876 0.84225 0.84453 1.86096 1.54638 1.39009 1.57989 1.21399 0.91840 0.95568 1.49511 0.90979 1.25074 1.00019 0.95000 0.92906 1.69762 1.32742 1.06876 1.43206 0.86420 0.83084 0.79200 0.78275 1.20143 1.21036 1.19636 1.24359 0.79851 0.98980 1.00804 1.21375 0.93938 0.97553 0.97585 1.21135 0.93915 0.97335 0.97230 0.84136 0.83278 0.74984 0.88281 0.88112 0.90981 0.89281 0.76218 0.91780 0.89553 0.90768 0.84041 0.84127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.41 18.54 41.83 0.78 -3.64 16 2 C 0.25 2.09 15.32 -22.47 -0.34 1.75 16 3 C -0.01 -0.05 5.73 -106.90 -0.61 -0.67 16 4 C -0.08 -0.47 9.73 -39.23 -0.38 -0.85 16 5 C -0.06 -0.46 9.58 -39.25 -0.38 -0.83 16 6 C -0.10 -0.89 5.88 -104.90 -0.62 -1.50 16 7 C 0.55 6.78 7.77 -12.30 -0.10 6.69 16 8 O -0.53 -8.14 16.33 5.32 0.09 -8.05 16 9 N -0.71 -8.82 5.48 -62.41 -0.34 -9.16 16 10 C 0.11 1.53 5.90 -5.19 -0.03 1.50 16 11 C 0.52 9.24 8.13 -10.98 -0.09 9.15 16 12 O -0.57 -10.99 16.40 5.55 0.09 -10.90 16 13 N -0.63 -11.94 3.61 -178.30 -0.64 -12.59 16 14 C 0.11 2.28 8.22 -2.98 -0.02 2.25 16 15 C 0.24 5.25 1.30 -90.83 -0.12 5.13 16 16 O -0.57 -13.38 13.52 -35.23 -0.48 -13.85 16 17 C -0.55 -12.80 8.58 -34.44 -0.30 -13.10 16 18 H 0.07 1.66 7.83 -52.49 -0.41 1.25 16 19 C 0.07 1.75 5.21 -17.82 -0.09 1.65 16 20 N -0.89 -21.27 11.79 55.43 0.65 -20.61 16 21 Si 0.90 18.58 29.55 -169.99 -5.02 13.56 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 C 0.08 1.63 7.90 -2.95 -0.02 1.61 16 26 C -0.09 -0.60 9.52 -39.25 -0.37 -0.97 16 27 C -0.08 -0.45 9.73 -39.23 -0.38 -0.83 16 28 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 29 H 0.15 1.10 7.64 -52.49 -0.40 0.70 16 30 H 0.41 4.68 5.46 -40.82 -0.22 4.46 16 31 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.07 1.45 8.14 -51.92 -0.42 1.03 16 34 H 0.09 1.62 8.09 -51.93 -0.42 1.20 16 35 H 0.39 9.13 7.18 45.56 0.33 9.46 16 36 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 37 H 0.09 1.66 8.09 -51.93 -0.42 1.24 16 38 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.14 0.85 6.39 -52.49 -0.34 0.51 16 40 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 LS Contribution 362.72 15.07 5.47 5.47 Total: -1.00 -28.83 362.72 -6.82 -35.65 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -3.55 Total: 13.15 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: -3.86 Total: 10.97 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.44 Total: -46.00 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.30 Total: -32.80 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.56 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.83 -6.82 -35.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356546637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.570 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds