Wall clock time and date at job start Tue Mar 31 2020 04:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42904 * 112.94794 * 48.40868 * 9 7 2 11 11 C 1.53953 * 113.74304 * 276.67772 * 9 7 2 12 12 N 1.47582 * 86.11558 * 222.04955 * 11 9 7 13 13 C 1.34773 * 134.48982 * 204.63927 * 12 11 9 14 14 O 1.21284 * 119.99947 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.00197 * 359.97438 * 13 12 11 16 16 C 1.53005 * 109.47160 * 180.02562 * 15 13 12 17 17 O 1.42898 * 109.46870 * 180.02562 * 16 15 13 18 18 C 1.42906 * 113.99875 * 179.97438 * 17 16 15 19 19 C 1.53000 * 109.47237 * 179.97438 * 18 17 16 20 20 F 1.39901 * 109.46950 * 180.02562 * 19 18 17 21 21 F 1.39904 * 109.47037 * 299.99995 * 19 18 17 22 22 C 1.53004 * 109.47340 * 59.99803 * 19 18 17 23 23 F 1.39898 * 109.46758 * 59.99766 * 22 19 18 24 24 F 1.39896 * 109.47004 * 180.02562 * 22 19 18 25 25 C 1.47581 * 91.01664 * 24.63711 * 12 11 9 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 0.96699 * 113.99284 * 309.66953 * 10 9 7 28 28 H 1.09002 * 113.76657 * 336.34627 * 11 9 7 29 29 H 1.08991 * 113.76978 * 107.74459 * 11 9 7 30 30 H 1.08994 * 109.47139 * 299.99683 * 15 13 12 31 31 H 1.09001 * 109.47137 * 59.99892 * 15 13 12 32 32 H 1.09008 * 109.46756 * 299.99545 * 16 15 13 33 33 H 1.09001 * 109.47279 * 59.99862 * 16 15 13 34 34 H 1.08998 * 109.47015 * 299.99972 * 18 17 16 35 35 H 1.08996 * 109.47062 * 59.99760 * 18 17 16 36 36 H 1.08997 * 109.46906 * 300.00140 * 22 19 18 37 37 H 1.09001 * 113.77016 * 221.05654 * 25 12 11 38 38 H 1.09005 * 113.86980 * 89.67729 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2156 -2.5447 -0.9843 11 6 0.7997 -2.9543 1.3992 12 7 1.2211 -4.3068 0.9853 13 6 0.8828 -5.5570 1.3583 14 8 1.4096 -6.5117 0.8272 15 6 -0.1499 -5.7686 2.4351 16 6 -0.3463 -7.2683 2.6658 17 8 -1.3260 -7.4689 3.6865 18 6 -1.5862 -8.8430 3.9804 19 6 -2.6442 -8.9376 5.0816 20 9 -2.8985 -10.2828 5.3697 21 9 -2.1776 -8.2947 6.2332 22 6 -3.9341 -8.2641 4.6087 23 9 -4.4007 -8.9070 3.4571 24 9 -4.9013 -8.3501 5.6158 25 6 2.1615 -3.7405 -0.0011 26 1 -0.4850 0.8401 0.0004 27 1 -0.3764 -1.7802 -0.9678 28 1 1.3966 -2.5373 2.2104 29 1 -0.2731 -2.8605 1.5670 30 1 0.1879 -5.3004 3.3596 31 1 -1.0946 -5.3215 2.1255 32 1 -0.6840 -7.7370 1.7414 33 1 0.5985 -7.7151 2.9756 34 1 -1.9493 -9.3440 3.0831 35 1 -0.6674 -9.3227 4.3178 36 1 -3.7356 -7.2161 4.3846 37 1 2.1758 -4.2745 -0.9513 38 1 3.1590 -3.5540 0.3970 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356572983.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:35 Heat of formation + Delta-G solvation = -296.025461 kcal Electronic energy + Delta-G solvation = -28216.341788 eV Core-core repulsion = 23174.067146 eV Total energy + Delta-G solvation = -5042.274642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.25205 -49.01308 -47.88966 -47.42934 -39.71091 -38.57516 -37.40639 -34.02785 -32.72211 -32.25939 -30.89585 -28.60665 -26.87570 -25.57372 -25.34295 -23.24687 -22.59240 -20.08219 -18.93706 -18.76735 -18.49519 -18.12510 -17.56645 -17.26841 -16.87164 -16.70699 -16.39374 -15.84326 -15.41666 -15.02769 -14.95119 -14.83478 -14.49596 -14.45640 -14.27318 -14.01125 -13.97149 -13.95228 -13.67531 -13.26043 -12.97700 -12.61631 -12.44797 -12.37667 -12.07076 -11.62864 -11.58728 -11.51910 -11.16700 -11.12123 -11.07991 -10.58848 -10.35633 -10.13313 -9.75714 -9.31938 -8.82342 -8.50772 -7.95206 -6.45232 -4.55610 2.25108 2.44527 3.04196 3.12576 3.18935 3.20755 3.27742 3.34177 3.46175 3.62157 3.85599 4.14065 4.35487 4.47424 4.66872 4.74148 4.79289 4.83687 4.95762 5.06083 5.35103 5.53343 5.69532 5.75231 5.88806 6.08816 6.29411 6.42599 6.51983 6.53844 6.59243 7.02406 7.57496 7.75385 8.35822 8.47267 8.58536 9.15721 9.39116 10.61478 Molecular weight = 329.11amu Principal moments of inertia in cm(-1) A = 0.021062 B = 0.002278 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.095746 B =12290.202511 C =12825.193785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.284 1.284 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.071 0.929 9 C 0.239 3.761 10 O -0.573 6.573 11 C 0.075 3.925 12 N -0.629 5.629 13 C 0.532 3.468 14 O -0.569 6.569 15 C -0.134 4.134 16 C 0.083 3.917 17 O -0.384 6.384 18 C 0.024 3.976 19 C 0.259 3.741 20 F -0.174 7.174 21 F -0.168 7.168 22 C 0.238 3.762 23 F -0.180 7.180 24 F -0.186 7.186 25 C 0.112 3.888 26 H 0.274 0.726 27 H 0.393 0.607 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.153 0.847 37 H 0.071 0.929 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.841 -12.747 9.647 17.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.736 3.264 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.576 4.576 8 H 0.089 0.911 9 C 0.197 3.803 10 O -0.386 6.386 11 C -0.047 4.047 12 N -0.362 5.362 13 C 0.322 3.678 14 O -0.451 6.451 15 C -0.174 4.174 16 C 0.007 3.993 17 O -0.303 6.303 18 C -0.054 4.054 19 C 0.221 3.779 20 F -0.154 7.154 21 F -0.149 7.149 22 C 0.183 3.817 23 F -0.162 7.162 24 F -0.167 7.167 25 C -0.010 4.010 26 H 0.085 0.915 27 H 0.249 0.751 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.170 0.830 37 H 0.089 0.911 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.633 -13.736 9.400 17.571 hybrid contribution 0.107 1.079 0.399 1.155 sum -5.526 -12.657 9.798 16.933 Atomic orbital electron populations 1.69301 1.06188 1.28361 1.50006 1.25069 0.95034 0.99909 0.92986 0.86373 0.79498 0.81567 0.78998 1.20981 1.19887 1.19849 1.21467 0.93913 0.89957 1.52306 0.91079 1.19829 0.85453 0.91192 0.83796 1.86057 1.45193 1.50560 1.56757 1.24383 1.00164 0.77473 1.02720 1.50153 1.41781 1.04627 1.39651 1.19793 0.83105 0.81905 0.83042 1.90650 1.56880 1.40204 1.57341 1.21371 1.00474 0.95964 0.99541 1.22286 0.90858 0.96370 0.89775 1.87735 1.61933 1.21600 1.59066 1.23265 0.98186 0.86860 0.97103 1.21855 0.94757 0.76408 0.84863 1.93116 1.94750 1.33491 1.94088 1.93129 1.89270 1.81106 1.51351 1.22825 0.83636 1.00119 0.75104 1.93059 1.89462 1.84245 1.49387 1.93065 1.65398 1.97515 1.60727 1.23485 0.93790 0.92493 0.91226 0.91529 0.75119 0.89814 0.91187 0.88218 0.88072 0.91506 0.91639 0.88694 0.89050 0.82999 0.91074 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.88 11.09 55.43 0.61 -21.26 16 2 C 0.07 1.74 5.40 -17.82 -0.10 1.65 16 3 Si 0.91 18.83 29.54 -169.99 -5.02 13.81 16 4 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.54 -12.94 8.62 -34.44 -0.30 -13.24 16 8 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.24 5.44 1.44 -90.84 -0.13 5.31 16 10 O -0.57 -14.11 13.48 -35.23 -0.48 -14.59 16 11 C 0.08 1.50 8.01 -2.97 -0.02 1.47 16 12 N -0.63 -12.34 3.61 -178.30 -0.64 -12.98 16 13 C 0.53 9.74 8.06 -10.99 -0.09 9.65 16 14 O -0.57 -11.89 16.71 5.55 0.09 -11.79 16 15 C -0.13 -1.81 5.82 -27.88 -0.16 -1.97 16 16 C 0.08 0.97 5.23 37.16 0.19 1.17 16 17 O -0.38 -3.94 9.61 -35.23 -0.34 -4.28 16 18 C 0.02 0.20 5.46 37.16 0.20 0.40 16 19 C 0.26 2.38 1.89 -26.73 -0.05 2.33 16 20 F -0.17 -1.74 17.02 2.25 0.04 -1.70 16 21 F -0.17 -1.76 16.98 2.25 0.04 -1.73 16 22 C 0.24 2.08 4.69 37.16 0.17 2.26 16 23 F -0.18 -1.74 16.80 2.25 0.04 -1.70 16 24 F -0.19 -1.92 17.30 2.25 0.04 -1.88 16 25 C 0.11 2.31 8.22 -2.97 -0.02 2.29 16 26 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 27 H 0.39 9.78 6.46 45.56 0.29 10.07 16 28 H 0.08 1.59 8.09 -51.93 -0.42 1.17 16 29 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.07 0.79 8.10 -51.92 -0.42 0.37 16 33 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 34 H 0.10 0.67 7.80 -51.93 -0.41 0.26 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.15 1.02 7.68 -51.93 -0.40 0.62 16 37 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.09 1.64 8.09 -51.93 -0.42 1.22 16 LS Contribution 347.45 15.07 5.24 5.24 Total: -1.00 -27.73 347.45 -4.53 -32.26 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -3.85 Total: 9.31 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -0.30 Total: 11.31 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: -0.03 Total: -34.24 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.72 Total: -30.66 kcal Atomic # 9 Polarization: -7.17 SS G_CDS: 0.15 Total: -7.01 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.81 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.73 -4.53 -32.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356572983.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -263.766 kcal (2) G-P(sol) polarization free energy of solvation -27.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -291.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -296.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds