Wall clock time and date at job start Tue Mar 31 2020 05:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39949 * 120.22265 * 156.99873 * 3 2 1 5 5 F 1.35098 * 120.07475 * 359.95054 * 4 3 2 6 6 C 1.38132 * 119.85916 * 179.97438 * 4 3 2 7 7 C 1.38461 * 120.30706 * 359.97438 * 6 4 3 8 8 C 1.38084 * 120.45723 * 0.02562 * 7 6 4 9 9 C 1.38815 * 120.13988 * 359.97438 * 8 7 6 10 10 N 1.39168 * 120.15563 * 179.97438 * 9 8 7 11 11 C 1.37035 * 125.31834 * 140.03244 * 10 9 8 12 12 C 1.34283 * 109.48627 * 179.97438 * 11 10 9 13 13 C 1.46778 * 107.48159 * 359.97438 * 12 11 10 14 14 N 1.30879 * 126.83890 * 180.02562 * 13 12 11 15 15 C 1.46497 * 120.00203 * 359.97254 * 14 13 12 16 16 C 1.50693 * 109.47228 * 120.00056 * 15 14 13 17 17 O 1.21295 * 120.00162 * 0.02562 * 16 15 14 18 18 N 1.34784 * 120.00446 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00219 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00152 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99778 * 180.02562 * 19 18 16 22 22 N 1.31406 * 119.99905 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99971 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47026 * 90.00081 * 23 21 19 25 25 H 1.48499 * 109.46986 * 210.00297 * 23 21 19 26 26 H 1.48498 * 109.46853 * 329.99900 * 23 21 19 27 27 N 1.38427 * 106.32219 * 359.77265 * 13 12 11 28 28 H 0.97002 * 126.32584 * 180.23406 * 27 13 12 29 29 H 1.07998 * 119.84930 * 179.97438 * 6 4 3 30 30 H 1.08003 * 119.76754 * 180.02562 * 7 6 4 31 31 H 1.08008 * 119.92566 * 180.27414 * 8 7 6 32 32 H 1.07995 * 125.25898 * 359.95463 * 11 10 9 33 33 H 1.07997 * 126.26177 * 179.97438 * 12 11 10 34 34 H 1.09002 * 109.47421 * 240.00525 * 15 14 13 35 35 H 1.09002 * 109.46778 * 0.02562 * 15 14 13 36 36 H 0.97003 * 119.99155 * 0.02562 * 18 16 15 37 37 H 0.97007 * 120.00279 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2719 1.1141 -0.4725 5 9 2.6020 2.1936 -0.9320 6 6 4.6532 1.1068 -0.4686 7 6 5.3448 0.0032 0.0012 8 6 4.6632 -1.1023 0.4704 9 6 3.2752 -1.1152 0.4750 10 7 2.5879 -2.2294 0.9473 11 6 1.4511 -2.1938 1.7117 12 6 1.0572 -3.4476 1.9873 13 6 2.0140 -4.3604 1.3505 14 7 1.9881 -5.6687 1.3782 15 6 0.9216 -6.3650 2.1020 16 6 0.1509 -7.2367 1.1444 17 8 0.4621 -7.2732 -0.0274 18 7 -0.8837 -7.9768 1.5901 19 6 -1.5852 -8.7694 0.7188 20 1 -1.3086 -8.8012 -0.3247 21 6 -2.6521 -9.5319 1.1783 22 7 -2.9889 -9.4928 2.4478 23 14 -3.6075 -10.6125 -0.0088 24 1 -2.9877 -11.9610 -0.0590 25 1 -5.0141 -10.7310 0.4523 26 1 -3.5802 -10.0043 -1.3632 27 7 2.9461 -3.5622 0.7100 28 1 3.7080 -3.8693 0.1941 29 1 5.1962 1.9660 -0.8337 30 1 6.4248 0.0070 0.0007 31 1 5.2114 -1.9569 0.8390 32 1 0.9497 -1.2960 2.0418 33 1 0.1941 -3.7323 2.5707 34 1 1.3585 -6.9840 2.8857 35 1 0.2484 -5.6336 2.5491 36 1 -1.1323 -7.9479 2.5273 37 1 -3.7335 -10.0254 2.7688 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357716141.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:55 Heat of formation + Delta-G solvation = 98.944216 kcal Electronic energy + Delta-G solvation = -25668.622236 eV Core-core repulsion = 21557.225927 eV Total energy + Delta-G solvation = -4111.396309 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.103 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.65500 -41.54296 -39.42454 -38.00416 -36.92856 -35.17401 -33.79199 -32.66728 -32.00435 -31.41705 -31.08709 -29.00714 -26.81272 -24.78527 -24.31862 -23.08689 -21.90690 -20.89928 -19.87254 -19.11876 -18.71505 -17.75000 -17.30196 -16.95874 -16.42114 -15.86675 -15.77062 -15.48433 -15.32995 -14.93763 -14.46834 -14.36021 -14.11297 -13.97602 -13.80332 -13.72829 -13.51246 -13.35234 -13.21785 -12.80152 -12.51576 -12.34553 -12.25681 -11.71225 -11.45656 -11.05258 -10.91945 -10.33807 -10.14845 -9.89010 -9.63108 -9.43136 -9.37373 -8.86387 -8.26188 -7.87595 -7.09922 -6.33463 -3.74003 -0.13572 0.25335 1.23429 1.60062 2.17646 2.33098 3.01770 3.12391 3.17797 3.23411 3.31105 3.38053 3.39758 3.52530 4.02099 4.04330 4.23385 4.25089 4.28504 4.46336 4.62457 4.85436 5.02542 5.12032 5.24033 5.30131 5.33815 5.44089 5.51604 5.62866 5.66204 5.92098 6.02095 6.16798 6.40346 6.55391 6.98899 7.09464 7.48678 7.62746 8.12482 8.39725 8.72446 9.27060 9.63910 10.17118 10.84350 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.023153 B = 0.002221 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.077107 B =12604.175683 C =13150.385241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C 0.240 3.760 3 C -0.090 4.090 4 C 0.179 3.821 5 F -0.121 7.121 6 C -0.174 4.174 7 C -0.028 4.028 8 C -0.158 4.158 9 C 0.254 3.746 10 N -0.354 5.354 11 C 0.110 3.890 12 C -0.253 4.253 13 C 0.407 3.593 14 N -0.548 5.548 15 C 0.062 3.938 16 C 0.446 3.554 17 O -0.578 6.578 18 N -0.568 5.568 19 C -0.296 4.296 20 H 0.101 0.899 21 C 0.021 3.979 22 N -0.904 5.904 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 N -0.515 5.515 28 H 0.447 0.553 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.178 0.822 33 H 0.167 0.833 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.392 0.608 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.755 24.638 0.923 30.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.057 5.057 2 C -0.075 4.075 3 C -0.099 4.099 4 C 0.156 3.844 5 F -0.099 7.099 6 C -0.194 4.194 7 C -0.048 4.048 8 C -0.179 4.179 9 C 0.154 3.846 10 N -0.139 5.139 11 C -0.014 4.014 12 C -0.284 4.284 13 C 0.132 3.868 14 N -0.274 5.274 15 C -0.072 4.072 16 C 0.231 3.769 17 O -0.461 6.461 18 N -0.205 5.205 19 C -0.426 4.426 20 H 0.119 0.881 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.756 3.244 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.195 1.195 27 N -0.254 5.254 28 H 0.295 0.705 29 H 0.169 0.831 30 H 0.168 0.832 31 H 0.164 0.836 32 H 0.195 0.805 33 H 0.184 0.816 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.225 0.775 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 17.527 23.768 -0.141 29.532 hybrid contribution -0.744 -0.044 0.117 0.755 sum 16.783 23.723 -0.024 29.060 Atomic orbital electron populations 1.81343 1.11290 1.05827 1.07235 1.25069 0.92143 0.95224 0.95102 1.15709 0.85397 0.97319 1.11490 1.17291 0.89847 0.82253 0.94997 1.91588 1.80689 1.52025 1.85578 1.21120 0.91151 1.01628 1.05524 1.21080 1.01020 0.90602 0.92084 1.21053 0.91029 1.01287 1.04559 1.16951 0.90665 0.83327 0.93703 1.42607 1.25252 0.95367 1.50643 1.22043 0.86188 1.00095 0.93092 1.22938 1.04094 0.91848 1.09494 1.20160 0.86576 0.89329 0.90746 1.71929 1.26915 1.02572 1.25979 1.21654 0.92532 0.97242 0.95783 1.19866 0.83302 0.84570 0.89157 1.90515 1.69226 1.68440 1.17935 1.41851 1.27701 1.39407 1.11551 1.19687 1.09893 1.19570 0.93412 0.88085 1.25236 0.97687 0.98511 0.96602 1.69613 1.29477 1.41811 1.13647 0.85871 0.78370 0.79946 0.80178 1.20427 1.20961 1.19510 1.43564 1.31773 0.91180 1.58858 0.70479 0.83092 0.83213 0.83581 0.80501 0.81569 0.88904 0.92537 0.77479 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -5.11 18.40 41.83 0.77 -4.34 16 2 C 0.24 2.63 12.00 -22.48 -0.27 2.36 16 3 C -0.09 -0.72 5.75 -106.52 -0.61 -1.33 16 4 C 0.18 1.11 7.28 -38.98 -0.28 0.83 16 5 F -0.12 -0.93 16.81 2.25 0.04 -0.89 16 6 C -0.17 -0.57 10.00 -39.54 -0.40 -0.96 16 7 C -0.03 -0.07 10.02 -39.56 -0.40 -0.46 16 8 C -0.16 -0.70 9.77 -39.42 -0.39 -1.08 16 9 C 0.25 1.90 6.31 -83.51 -0.53 1.38 16 10 N -0.35 -3.62 3.61 -10.39 -0.04 -3.65 16 11 C 0.11 1.21 9.61 -16.62 -0.16 1.05 16 12 C -0.25 -3.43 10.08 -37.53 -0.38 -3.80 16 13 C 0.41 6.46 8.29 -153.74 -1.28 5.19 16 14 N -0.55 -10.71 10.14 -59.77 -0.61 -11.32 16 15 C 0.06 1.23 6.82 -5.20 -0.04 1.20 16 16 C 0.45 11.52 7.85 -10.99 -0.09 11.44 16 17 O -0.58 -17.31 16.01 5.54 0.09 -17.22 16 18 N -0.57 -15.23 5.29 -10.96 -0.06 -15.28 16 19 C -0.30 -8.66 9.68 -14.93 -0.14 -8.80 16 20 H 0.10 3.11 7.16 -52.49 -0.38 2.74 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -25.36 13.05 55.50 0.72 -24.63 16 23 Si 0.93 21.87 29.55 -169.99 -5.02 16.85 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 27 N -0.51 -6.19 7.18 32.40 0.23 -5.95 16 28 H 0.45 4.39 8.96 -182.65 -1.64 2.76 16 29 H 0.15 0.15 8.06 -52.49 -0.42 -0.27 16 30 H 0.15 -0.09 8.06 -52.48 -0.42 -0.51 16 31 H 0.15 0.48 8.06 -52.48 -0.42 0.06 16 32 H 0.18 1.60 6.83 -52.49 -0.36 1.24 16 33 H 0.17 2.09 6.91 -52.49 -0.36 1.73 16 34 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 35 H 0.06 0.98 5.99 -51.93 -0.31 0.67 16 36 H 0.39 9.92 7.90 -40.82 -0.32 9.60 16 37 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 344.68 15.07 5.19 5.19 Total: -1.00 -37.90 344.68 -7.92 -45.82 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -4.19 Total: 7.96 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: -5.05 Total: 7.47 kcal Atomic # 7 Polarization: -66.20 SS G_CDS: 1.02 Total: -65.18 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: 0.09 Total: -17.22 kcal Atomic # 9 Polarization: -0.93 SS G_CDS: 0.04 Total: -0.89 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -37.90 -7.92 -45.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357716141.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.762 kcal (2) G-P(sol) polarization free energy of solvation -37.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds