Wall clock time and date at job start Tue Mar 31 2020 04:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34236 * 116.99997 * 2 1 4 4 O 1.20824 * 119.99642 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99797 * 180.02562 * 3 2 1 6 6 N 1.46507 * 109.46814 * 179.97438 * 5 3 2 7 7 C 1.37098 * 120.00256 * 263.10248 * 6 5 3 8 8 H 1.08000 * 119.99688 * 142.05544 * 7 6 5 9 9 C 1.38944 * 119.99991 * 322.05942 * 7 6 5 10 10 N 1.31406 * 120.00145 * 158.26164 * 9 7 6 11 11 Si 1.86805 * 119.99819 * 338.26333 * 9 7 6 12 12 H 1.48504 * 109.47196 * 95.91754 * 11 9 7 13 13 H 1.48510 * 109.46748 * 215.91396 * 11 9 7 14 14 H 1.48492 * 109.47198 * 335.91362 * 11 9 7 15 15 C 1.34783 * 119.99527 * 83.10314 * 6 5 3 16 16 O 1.21288 * 120.00308 * 359.97438 * 15 6 5 17 17 C 1.50699 * 119.99663 * 180.02562 * 15 6 5 18 18 O 1.42902 * 109.46880 * 180.02562 * 17 15 6 19 19 C 1.35897 * 116.99491 * 180.02562 * 18 17 15 20 20 C 1.38700 * 120.03205 * 359.71334 * 19 18 17 21 21 C 1.38381 * 119.96820 * 180.32305 * 20 19 18 22 22 F 1.35107 * 119.98510 * 179.97438 * 21 20 19 23 23 C 1.38457 * 120.03092 * 359.93635 * 21 20 19 24 24 C 1.38456 * 120.05799 * 0.04614 * 23 21 20 25 25 F 1.35108 * 119.98216 * 179.97438 * 24 23 21 26 26 C 1.38373 * 120.03224 * 0.02562 * 24 23 21 27 27 H 1.09000 * 109.47299 * 59.99557 * 1 2 3 28 28 H 1.09000 * 109.47259 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47310 * 299.99638 * 1 2 3 30 30 H 1.08993 * 109.47166 * 60.00750 * 5 3 2 31 31 H 1.08999 * 109.47235 * 299.99699 * 5 3 2 32 32 H 0.97003 * 119.99959 * 179.97438 * 10 9 7 33 33 H 1.08994 * 109.47401 * 59.99789 * 17 15 6 34 34 H 1.09001 * 109.46776 * 299.99704 * 17 15 6 35 35 H 1.08001 * 120.01703 * 0.26143 * 20 19 18 36 36 H 1.08005 * 119.96751 * 180.02562 * 23 21 20 37 37 H 1.08001 * 120.01715 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6798 -0.0011 7 6 4.3123 3.2965 -1.1800 8 1 4.0337 4.3265 -1.3473 9 6 5.0057 2.5964 -2.1596 10 7 4.9582 2.9958 -3.4106 11 14 6.0054 1.0874 -1.6982 12 1 5.1930 -0.1341 -1.9287 13 1 7.2316 1.0314 -2.5343 14 1 6.3866 1.1653 -0.2652 15 6 4.0387 3.3660 1.1576 16 8 3.7457 2.8206 2.2006 17 6 4.4654 4.8113 1.1570 18 8 4.4464 5.3140 2.4946 19 6 4.8071 6.6124 2.6708 20 6 5.1772 7.3843 1.5794 21 6 5.5506 8.7043 1.7612 22 9 5.9117 9.4563 0.6984 23 6 5.5536 9.2550 3.0315 24 6 5.1840 8.4856 4.1217 25 9 5.1880 9.0244 5.3607 26 6 4.8116 7.1650 3.9431 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 3.9556 0.7811 -0.8908 31 1 3.9563 0.7806 0.8892 32 1 5.4426 2.5073 -4.0945 33 1 3.7798 5.3924 0.5404 34 1 5.4746 4.8920 0.7532 35 1 5.1749 6.9550 0.5884 36 1 5.8448 10.2854 3.1721 37 1 4.5237 6.5650 4.7937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357855727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:51 Heat of formation + Delta-G solvation = -197.400384 kcal Electronic energy + Delta-G solvation = -27725.222875 eV Core-core repulsion = 23105.621373 eV Total energy + Delta-G solvation = -4619.601502 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.095 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.13716 -49.06927 -40.32959 -39.95618 -38.68812 -36.97657 -35.95346 -35.03828 -32.26629 -30.82361 -30.22331 -29.53753 -27.75665 -26.30385 -24.96702 -23.01518 -22.67005 -21.04874 -19.46469 -18.86494 -17.98090 -17.47009 -17.07519 -16.83021 -16.34192 -16.30776 -16.19740 -15.98014 -15.67709 -15.63407 -15.43272 -15.38942 -15.09535 -14.38820 -14.32846 -13.91334 -13.58154 -13.22362 -13.02204 -12.79324 -12.49218 -12.26560 -11.98257 -11.90656 -11.88916 -11.69359 -11.53777 -11.14324 -10.76797 -10.71943 -10.43124 -10.28208 -10.04040 -9.51686 -8.95792 -8.92431 -8.45808 -8.21826 -6.75670 -4.41193 0.84540 1.01765 2.70708 2.75020 2.82541 2.96108 3.07915 3.10255 3.29086 3.49842 3.78713 3.86535 4.17090 4.35868 4.65742 4.74448 4.77685 4.85842 5.10836 5.28025 5.34296 5.38342 5.41975 5.54340 5.60424 5.65712 5.71634 5.71976 5.81324 5.88176 5.88302 6.04087 6.52817 6.74256 6.90824 7.27672 7.71774 7.91525 8.27493 8.60663 8.94525 9.25577 10.33774 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.013470 B = 0.003500 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.257900 B = 7998.078388 C = 9209.290580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.450 3.550 4 O -0.490 6.490 5 C 0.112 3.888 6 N -0.443 5.443 7 C -0.360 4.360 8 H 0.109 0.891 9 C 0.071 3.929 10 N -0.842 5.842 11 Si 0.861 3.139 12 H -0.267 1.267 13 H -0.278 1.278 14 H -0.254 1.254 15 C 0.498 3.502 16 O -0.568 6.568 17 C 0.058 3.942 18 O -0.281 6.281 19 C 0.201 3.799 20 C -0.258 4.258 21 C 0.173 3.827 22 F -0.128 7.128 23 C -0.238 4.238 24 C 0.167 3.833 25 F -0.129 7.129 26 C -0.202 4.202 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.280 0.720 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.155 0.845 36 H 0.147 0.853 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.169 3.575 7.073 7.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.291 3.709 4 O -0.375 6.375 5 C -0.013 4.013 6 N -0.166 5.166 7 C -0.487 4.487 8 H 0.126 0.874 9 C -0.139 4.139 10 N -0.475 5.475 11 Si 0.687 3.313 12 H -0.194 1.194 13 H -0.204 1.204 14 H -0.177 1.177 15 C 0.287 3.713 16 O -0.450 6.450 17 C -0.019 4.019 18 O -0.192 6.192 19 C 0.153 3.847 20 C -0.278 4.278 21 C 0.153 3.847 22 F -0.106 7.106 23 C -0.258 4.258 24 C 0.148 3.852 25 F -0.107 7.107 26 C -0.222 4.222 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.173 0.827 36 H 0.165 0.835 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.207 3.490 7.512 8.285 hybrid contribution 0.333 -0.371 -0.495 0.703 sum 0.126 3.119 7.017 7.679 Atomic orbital electron populations 1.23153 0.77353 1.02934 1.02319 1.86514 1.22809 1.34320 1.84866 1.24640 0.92744 0.81285 0.72251 1.90616 1.66585 1.36297 1.43988 1.21379 0.87086 0.87646 1.05201 1.43196 1.58113 1.08505 1.06756 1.19113 1.37608 1.00224 0.91721 0.87403 1.25369 0.95788 0.98177 0.94520 1.69758 1.37536 1.40380 0.99824 0.87143 0.81024 0.82498 0.80656 1.19354 1.20358 1.17722 1.19619 0.80662 0.87631 0.83361 1.90620 1.52492 1.70346 1.31550 1.22510 1.04132 0.94509 0.80728 1.86166 1.80960 1.21545 1.30545 1.18327 0.90222 0.83881 0.92254 1.21426 1.10797 0.94299 1.01249 1.16883 0.96317 0.88493 0.83008 1.91547 1.88793 1.75651 1.54626 1.20808 1.11788 1.02494 0.90724 1.16732 0.98320 0.90755 0.79428 1.91534 1.93882 1.85979 1.39298 1.20287 1.10126 0.94504 0.97246 0.92160 0.88634 0.92246 0.87039 0.87038 0.90923 0.88684 0.88092 0.82722 0.83550 0.83122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.57 16 2 O -0.37 -6.57 10.57 -39.27 -0.41 -6.99 16 3 C 0.45 9.52 7.98 36.00 0.29 9.81 16 4 O -0.49 -11.64 16.01 -18.75 -0.30 -11.94 16 5 C 0.11 2.35 4.49 -5.19 -0.02 2.32 16 6 N -0.44 -10.06 1.74 -116.10 -0.20 -10.26 16 7 C -0.36 -8.59 9.05 -14.94 -0.14 -8.73 16 8 H 0.11 2.67 7.24 -52.49 -0.38 2.29 16 9 C 0.07 1.71 5.27 -17.47 -0.09 1.62 16 10 N -0.84 -21.34 13.96 55.50 0.77 -20.56 16 11 Si 0.86 17.83 25.01 -169.99 -4.25 13.58 16 12 H -0.27 -5.26 6.71 56.52 0.38 -4.88 16 13 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 14 H -0.25 -5.20 7.11 56.52 0.40 -4.80 16 15 C 0.50 11.13 7.45 -10.98 -0.08 11.04 16 16 O -0.57 -13.89 16.20 -14.36 -0.23 -14.12 16 17 C 0.06 1.08 3.92 36.01 0.14 1.22 16 18 O -0.28 -5.05 9.67 -39.33 -0.38 -5.43 16 19 C 0.20 3.01 6.68 -39.24 -0.26 2.75 16 20 C -0.26 -3.56 9.01 -39.36 -0.35 -3.92 16 21 C 0.17 2.22 7.30 -39.45 -0.29 1.93 16 22 F -0.13 -1.68 17.27 2.25 0.04 -1.64 16 23 C -0.24 -2.76 10.00 -39.42 -0.39 -3.16 16 24 C 0.17 2.04 7.30 -39.45 -0.29 1.75 16 25 F -0.13 -1.53 17.27 2.25 0.04 -1.49 16 26 C -0.20 -2.69 9.96 -39.36 -0.39 -3.08 16 27 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 28 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 30 H 0.11 2.29 3.66 -51.93 -0.19 2.10 16 31 H 0.11 2.16 7.64 -51.93 -0.40 1.76 16 32 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16 33 H 0.10 1.66 7.19 -51.93 -0.37 1.28 16 34 H 0.10 1.69 7.61 -51.93 -0.40 1.29 16 35 H 0.16 2.07 6.30 -52.49 -0.33 1.74 16 36 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 37 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 336.04 15.07 5.06 5.06 Total: -1.00 -29.22 336.04 -4.02 -33.24 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -3.34 Total: 5.41 kcal Atomic # 6 Polarization: 15.94 SS G_CDS: -0.82 Total: 15.13 kcal Atomic # 7 Polarization: -31.39 SS G_CDS: 0.57 Total: -30.82 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -1.33 Total: -38.48 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.08 Total: -3.13 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -4.25 Total: 13.58 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.22 -4.02 -33.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357855727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.163 kcal (2) G-P(sol) polarization free energy of solvation -29.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds