Wall clock time and date at job start Tue Mar 31 2020 07:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00345 * 2 1 4 4 N 1.46498 * 109.47279 * 126.18840 * 3 2 1 5 5 C 1.46494 * 119.99930 * 277.41141 * 4 3 2 6 6 C 1.50701 * 109.47563 * 270.00465 * 5 4 3 7 7 H 1.08004 * 119.99783 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00537 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99496 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00130 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47049 * 90.00395 * 10 8 6 12 12 H 1.48503 * 109.47087 * 210.00061 * 10 8 6 13 13 H 1.48499 * 109.47313 * 330.00322 * 10 8 6 14 14 C 1.34777 * 120.00238 * 97.41829 * 4 3 2 15 15 O 1.21579 * 119.99959 * 185.65997 * 14 4 3 16 16 C 1.47655 * 119.99742 * 5.65220 * 14 4 3 17 17 C 1.39878 * 120.04344 * 311.19343 * 16 14 4 18 18 C 1.37522 * 120.09553 * 179.72085 * 17 16 14 19 19 C 1.39336 * 120.25442 * 0.23532 * 18 17 16 20 20 N 1.38863 * 119.50961 * 180.02562 * 19 18 17 21 21 H 0.96995 * 119.90619 * 0.02562 * 20 19 18 22 22 C 1.34811 * 120.19676 * 179.97438 * 20 19 18 23 23 O 1.21442 * 120.32580 * 180.02562 * 22 20 19 24 24 C 1.49191 * 119.35079 * 359.97438 * 22 20 19 25 25 O 1.21455 * 120.35954 * 180.02562 * 24 22 20 26 26 N 1.34849 * 119.27865 * 359.97438 * 24 22 20 27 27 H 0.97007 * 119.96689 * 180.02562 * 26 24 22 28 28 C 1.39302 * 120.06046 * 359.97438 * 26 24 22 29 29 C 1.38692 * 119.57008 * 180.02562 * 28 26 24 30 30 H 1.07999 * 120.00581 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.99664 * 0.02562 * 1 2 3 32 32 H 1.08005 * 119.99664 * 179.97438 * 2 1 3 33 33 H 1.09003 * 109.47222 * 6.18444 * 3 2 1 34 34 H 1.09002 * 109.47030 * 246.18634 * 3 2 1 35 35 H 1.09006 * 109.47334 * 30.00209 * 5 4 3 36 36 H 1.09002 * 109.47561 * 150.00493 * 5 4 3 37 37 H 0.97007 * 120.00009 * 179.97438 * 9 8 6 38 38 H 1.07999 * 119.94648 * 359.97438 * 17 16 14 39 39 H 1.07998 * 119.86967 * 180.25633 * 18 17 16 40 40 H 1.07995 * 120.03775 * 0.04503 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0140 1.3202 1.1147 5 6 2.5606 1.6858 2.4589 6 6 2.7010 3.1741 2.6491 7 1 3.0895 3.7865 1.8487 8 6 2.3334 3.7542 3.8446 9 7 1.8598 3.0086 4.8190 10 14 2.5081 5.5990 4.0805 11 1 1.2558 6.2733 3.6538 12 1 2.7651 5.8927 5.5133 13 1 3.6424 6.0974 3.2618 14 6 4.3055 0.9979 0.9036 15 8 5.0716 0.9101 1.8436 16 6 4.7899 0.7513 -0.4693 17 6 4.0819 -0.1056 -1.3184 18 6 4.5290 -0.3316 -2.5991 19 6 5.6908 0.2869 -3.0565 20 7 6.1279 0.0482 -4.3527 21 1 5.6241 -0.5453 -4.9314 22 6 7.2498 0.6397 -4.8098 23 8 7.6339 0.4330 -5.9431 24 6 8.0142 1.5517 -3.9099 25 8 9.0271 2.0946 -4.3028 26 7 7.5677 1.7675 -2.6559 27 1 8.0568 2.3589 -2.0625 28 6 6.4044 1.1428 -2.2122 29 6 5.9541 1.3724 -0.9207 30 1 -0.5401 -0.9352 0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8499 -0.9354 0.0004 33 1 1.3604 2.1306 0.1107 34 1 2.6046 1.4122 -0.9402 35 1 1.5153 1.4011 2.5798 36 1 3.1669 1.1660 3.2008 37 1 1.6016 3.4166 5.6603 38 1 3.1807 -0.5873 -0.9689 39 1 3.9772 -0.9906 -3.2530 40 1 6.5036 2.0323 -0.2659 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359371171.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:03 Heat of formation + Delta-G solvation = -33.824764 kcal Electronic energy + Delta-G solvation = -27308.286004 eV Core-core repulsion = 23282.299954 eV Total energy + Delta-G solvation = -4025.986050 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.12320 -40.10765 -38.86036 -38.73597 -36.04242 -35.82342 -35.27765 -33.30096 -32.20903 -30.63733 -30.02224 -27.58645 -26.12060 -25.78210 -24.38866 -23.55956 -22.54810 -20.38570 -20.05813 -19.49983 -18.60663 -18.41689 -17.79636 -16.76427 -16.61794 -16.58312 -16.13680 -15.79222 -15.19183 -15.01819 -14.64534 -14.50836 -14.32438 -14.25001 -14.03624 -13.78301 -13.64731 -13.00339 -12.51060 -12.24658 -12.04753 -11.84902 -11.71605 -11.57443 -11.37860 -11.18744 -11.00435 -10.93911 -10.66217 -10.42470 -10.27188 -9.75759 -9.32494 -9.26168 -8.95814 -8.51774 -8.16817 -7.85722 -6.12911 -4.18423 0.41853 0.62534 1.20051 1.97419 2.30558 2.44430 2.50268 3.11622 3.24394 3.31909 3.34299 3.38315 3.52381 3.83028 4.11653 4.36214 4.52708 4.73820 4.88447 4.96998 5.12423 5.20489 5.21922 5.25427 5.27833 5.52659 5.65817 5.76285 5.90952 6.03061 6.08536 6.11999 6.19348 6.23686 6.60801 6.66554 6.77649 6.90710 6.95973 7.32541 7.39586 7.40835 7.82675 8.12335 8.19963 8.72553 8.89600 9.47055 10.95178 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014680 B = 0.003262 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.928423 B = 8581.745903 C = 9844.952440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.176 4.176 3 C 0.127 3.873 4 N -0.582 5.582 5 C 0.246 3.754 6 C -0.531 4.531 7 H 0.058 0.942 8 C 0.063 3.937 9 N -0.892 5.892 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.547 3.453 15 O -0.529 6.529 16 C -0.095 4.095 17 C -0.085 4.085 18 C -0.123 4.123 19 C 0.125 3.875 20 N -0.630 5.630 21 H 0.422 0.578 22 C 0.509 3.491 23 O -0.474 6.474 24 C 0.508 3.492 25 O -0.475 6.475 26 N -0.629 5.629 27 H 0.425 0.575 28 C 0.110 3.890 29 C -0.069 4.069 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.036 0.964 36 H 0.047 0.953 37 H 0.264 0.736 38 H 0.150 0.850 39 H 0.143 0.857 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.705 -7.895 -15.865 17.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.195 4.195 3 C 0.003 3.997 4 N -0.312 5.312 5 C 0.128 3.872 6 C -0.570 4.570 7 H 0.076 0.924 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.725 3.275 11 H -0.206 1.206 12 H -0.210 1.210 13 H -0.199 1.199 14 C 0.333 3.667 15 O -0.406 6.406 16 C -0.100 4.100 17 C -0.104 4.104 18 C -0.144 4.144 19 C 0.025 3.975 20 N -0.278 5.278 21 H 0.262 0.738 22 C 0.291 3.709 23 O -0.344 6.344 24 C 0.290 3.710 25 O -0.344 6.344 26 N -0.279 5.279 27 H 0.265 0.735 28 C 0.012 3.988 29 C -0.091 4.091 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.126 0.874 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.168 0.832 39 H 0.161 0.839 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.985 -7.674 -16.165 18.004 hybrid contribution -0.148 0.985 0.340 1.053 sum 1.837 -6.689 -15.825 17.279 Atomic orbital electron populations 1.23860 0.95812 1.01977 0.99431 1.23403 0.96412 0.98740 1.00956 1.20798 0.92894 0.95538 0.90449 1.48173 1.06643 1.64728 1.11618 1.19346 0.95623 0.95748 0.76511 1.21410 1.43436 0.92428 0.99737 0.92357 1.24922 0.94974 0.98444 0.95605 1.69929 1.42961 1.35491 1.04681 0.86505 0.78416 0.85044 0.77511 1.20604 1.21048 1.19869 1.18029 0.82988 0.78433 0.87262 1.90804 1.55009 1.51629 1.43207 1.20070 0.95456 0.98807 0.95653 1.21606 0.99729 0.96885 0.92217 1.20571 0.94828 1.01869 0.97150 1.17452 0.96473 0.99466 0.84079 1.43596 1.25426 1.45921 1.12883 0.73781 1.20171 0.81103 0.81575 0.88053 1.90903 1.66358 1.59644 1.17468 1.20098 0.85899 0.83062 0.81946 1.90914 1.22825 1.47260 1.73403 1.43704 1.24315 1.45628 1.14219 0.73467 1.17179 0.89093 0.98310 0.94261 1.20705 0.95853 1.00170 0.92347 0.88587 0.88146 0.87383 0.89461 0.89875 0.94603 0.93541 0.92614 0.83218 0.83899 0.83428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 14.32 29.02 0.42 -1.45 16 2 C -0.18 -2.05 8.56 -36.02 -0.31 -2.36 16 3 C 0.13 1.76 5.34 -5.20 -0.03 1.74 16 4 N -0.58 -10.92 2.45 -177.62 -0.43 -11.36 16 5 C 0.25 5.95 5.21 -5.20 -0.03 5.92 16 6 C -0.53 -14.09 9.39 -34.44 -0.32 -14.41 16 7 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 9 N -0.89 -25.36 13.29 55.43 0.74 -24.62 16 10 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 14 C 0.55 10.09 7.22 -12.42 -0.09 10.00 16 15 O -0.53 -12.15 16.57 5.30 0.09 -12.06 16 16 C -0.09 -1.24 4.96 -104.99 -0.52 -1.76 16 17 C -0.08 -0.80 7.46 -39.23 -0.29 -1.10 16 18 C -0.12 -0.86 9.83 -39.43 -0.39 -1.25 16 19 C 0.12 1.04 6.62 -83.68 -0.55 0.48 16 20 N -0.63 -4.85 5.37 -10.23 -0.05 -4.90 16 21 H 0.42 2.09 8.78 -40.82 -0.36 1.73 16 22 C 0.51 5.67 8.00 -11.69 -0.09 5.58 16 23 O -0.47 -6.70 17.80 -10.84 -0.19 -6.89 16 24 C 0.51 5.99 8.01 -11.67 -0.09 5.90 16 25 O -0.47 -7.10 17.81 -10.85 -0.19 -7.30 16 26 N -0.63 -5.95 5.39 -10.26 -0.06 -6.00 16 27 H 0.42 3.29 8.79 -40.82 -0.36 2.93 16 28 C 0.11 1.07 6.61 -83.71 -0.55 0.51 16 29 C -0.07 -0.79 9.53 -38.96 -0.37 -1.16 16 30 H 0.10 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.10 1.09 7.85 -52.48 -0.41 0.68 16 32 H 0.11 1.12 6.51 -52.48 -0.34 0.78 16 33 H 0.09 1.29 7.78 -51.93 -0.40 0.89 16 34 H 0.08 0.95 5.26 -51.93 -0.27 0.67 16 35 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 36 H 0.05 1.28 7.35 -51.93 -0.38 0.90 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.15 1.30 4.14 -52.49 -0.22 1.08 16 39 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 40 H 0.15 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 350.87 15.07 5.29 5.29 Total: -1.00 -34.84 350.87 -7.14 -41.99 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -3.98 Total: 1.77 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: -3.32 Total: 8.26 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.19 Total: -46.88 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.30 Total: -26.25 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.84 -7.14 -41.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359371171.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.164 kcal (2) G-P(sol) polarization free energy of solvation -34.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds