Wall clock time and date at job start Tue Mar 31 2020 06:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37777 * 120.01020 * 2 1 4 4 C 1.38741 * 120.72105 * 180.02562 * 3 2 1 5 5 C 1.37763 * 120.29464 * 359.67767 * 4 3 2 6 6 C 1.39448 * 119.60345 * 0.58574 * 5 4 3 7 7 C 1.39234 * 120.01256 * 179.97438 * 2 1 3 8 8 N 1.37800 * 120.52910 * 359.97438 * 7 2 1 9 9 H 0.97003 * 118.60268 * 0.05365 * 8 7 2 10 10 C 1.33956 * 122.80116 * 180.02562 * 8 7 2 11 11 C 1.37940 * 122.21412 * 0.02562 * 10 8 7 12 12 C 1.47128 * 120.55368 * 179.97438 * 11 10 8 13 13 O 1.21643 * 120.00251 * 179.97438 * 12 11 10 14 14 N 1.34773 * 120.00180 * 0.02562 * 12 11 10 15 15 C 1.46502 * 120.00405 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47437 * 179.97438 * 15 14 12 17 17 O 1.21299 * 119.99955 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00219 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00263 * 180.02562 * 18 16 15 20 20 H 1.08007 * 119.99600 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00091 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99998 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99936 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47297 * 89.99634 * 23 21 19 25 25 H 1.48505 * 109.47238 * 210.00160 * 23 21 19 26 26 H 1.48508 * 109.47228 * 329.99963 * 23 21 19 27 27 C 1.47152 * 118.89491 * 359.94074 * 11 10 8 28 28 O 1.21856 * 121.40704 * 180.02562 * 27 11 10 29 29 H 1.09002 * 109.46981 * 270.02402 * 1 2 3 30 30 H 1.09001 * 109.47513 * 30.02699 * 1 2 3 31 31 H 1.09003 * 109.46839 * 150.02594 * 1 2 3 32 32 H 1.07993 * 119.64125 * 359.97438 * 3 2 1 33 33 H 1.08005 * 119.85324 * 179.97438 * 4 3 2 34 34 H 1.08002 * 120.19422 * 180.02562 * 5 4 3 35 35 H 1.08008 * 118.89563 * 180.02562 * 10 8 7 36 36 H 0.97003 * 119.99955 * 0.02562 * 14 12 11 37 37 H 1.08998 * 109.47074 * 300.00185 * 15 14 12 38 38 H 1.09003 * 109.46863 * 60.00289 * 15 14 12 39 39 H 0.96996 * 119.99880 * 359.97438 * 18 16 15 40 40 H 0.97005 * 119.99787 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1931 0.0000 4 6 3.5834 1.2103 -0.0005 5 6 4.2931 0.0295 0.0056 6 6 3.6088 -1.1855 0.0000 7 6 2.2035 -1.2056 0.0005 8 7 1.5258 -2.4055 0.0016 9 1 0.5558 -2.3910 0.0012 10 6 2.1493 -3.5911 0.0027 11 6 3.5245 -3.6987 0.0033 12 6 4.1713 -5.0202 0.0050 13 8 5.3849 -5.1034 0.0051 14 7 3.4192 -6.1386 0.0055 15 6 4.0633 -7.4544 0.0066 16 6 3.0080 -8.5302 0.0076 17 8 1.8334 -8.2276 0.0069 18 7 3.3693 -9.8286 0.0092 19 6 2.4092 -10.8074 0.0096 20 1 1.3633 -10.5378 0.0089 21 6 2.7818 -12.1460 0.0108 22 7 4.0543 -12.4738 0.0110 23 14 1.4736 -13.4795 0.0119 24 1 1.1269 -13.8340 -1.3878 25 1 1.9926 -14.6813 0.7131 26 1 0.2614 -12.9832 0.7116 27 6 4.3338 -2.4697 0.0014 28 8 5.5517 -2.5114 0.0014 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8897 -0.5142 31 1 -0.3633 -0.8903 -0.5135 32 1 1.6505 2.1250 -0.0004 33 1 4.1094 2.1536 -0.0009 34 1 5.3730 0.0448 0.0056 35 1 1.5553 -4.4932 0.0030 36 1 2.4515 -6.0723 0.0043 37 1 4.6849 -7.5555 -0.8830 38 1 4.6841 -7.5543 0.8970 39 1 4.3086 -10.0707 0.0094 40 1 4.3143 -13.4084 0.0122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359971520.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:32 Heat of formation + Delta-G solvation = -65.909758 kcal Electronic energy + Delta-G solvation = -26371.720076 eV Core-core repulsion = 22344.342716 eV Total energy + Delta-G solvation = -4027.377360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.46601 -39.43765 -38.31275 -37.82281 -37.45821 -34.40461 -33.75787 -33.44600 -31.56279 -31.27501 -30.64422 -27.60532 -27.55217 -24.91378 -24.22104 -23.84109 -21.87797 -20.60583 -19.67864 -18.89069 -18.66065 -18.04129 -17.93076 -16.62662 -15.78496 -15.62465 -15.52736 -15.33011 -15.00635 -14.98407 -14.71724 -14.42917 -14.07782 -14.06642 -13.86797 -13.52483 -13.47496 -13.27791 -12.97332 -12.94477 -12.21213 -12.18836 -12.15021 -11.84065 -11.65115 -11.63520 -11.13214 -10.47059 -10.32683 -9.96638 -9.64367 -9.58738 -9.31823 -9.28503 -8.72014 -8.63727 -8.10885 -8.01391 -6.51726 -3.93996 0.39234 0.47806 1.33280 2.40317 2.55318 3.10844 3.20791 3.24761 3.31689 3.33719 3.73316 3.86976 3.91676 4.08647 4.11610 4.27476 4.49714 4.57764 4.60821 4.75010 4.91024 4.97817 4.99950 5.12386 5.17101 5.24555 5.39571 5.51796 5.56932 5.64487 5.94627 6.00646 6.02683 6.09092 6.15181 6.20614 6.51992 6.58992 6.74937 7.45162 7.82400 7.90124 7.91682 8.44207 8.62388 9.03715 9.39246 9.86639 10.65080 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.025642 B = 0.002231 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.704372 B =12546.958161 C =13618.214624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.136 4.136 3 C -0.064 4.064 4 C -0.150 4.150 5 C -0.036 4.036 6 C -0.177 4.177 7 C 0.182 3.818 8 N -0.596 5.596 9 H 0.421 0.579 10 C 0.210 3.790 11 C -0.320 4.320 12 C 0.573 3.427 13 O -0.524 6.524 14 N -0.713 5.713 15 C 0.112 3.888 16 C 0.429 3.571 17 O -0.602 6.602 18 N -0.548 5.548 19 C -0.305 4.305 20 H 0.105 0.895 21 C 0.025 3.975 22 N -0.893 5.893 23 Si 0.933 3.067 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.269 1.269 27 C 0.432 3.568 28 O -0.448 6.448 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.141 0.859 35 H 0.173 0.827 36 H 0.402 0.598 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.397 0.603 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.024 26.483 0.016 27.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.139 4.139 3 C -0.083 4.083 4 C -0.169 4.169 5 C -0.055 4.055 6 C -0.181 4.181 7 C 0.081 3.919 8 N -0.205 5.205 9 H 0.259 0.741 10 C 0.077 3.923 11 C -0.333 4.333 12 C 0.360 3.640 13 O -0.400 6.400 14 N -0.369 5.369 15 C -0.016 4.016 16 C 0.215 3.785 17 O -0.489 6.489 18 N -0.183 5.183 19 C -0.435 4.435 20 H 0.123 0.877 21 C -0.178 4.178 22 N -0.533 5.533 23 Si 0.760 3.240 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.194 1.194 27 C 0.313 3.687 28 O -0.324 6.324 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.159 0.841 35 H 0.190 0.810 36 H 0.240 0.760 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.230 0.770 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.102 26.368 0.022 27.307 hybrid contribution -1.041 -0.977 -0.019 1.427 sum -8.143 25.391 0.003 26.665 Atomic orbital electron populations 1.20743 0.90308 1.03248 1.02880 1.19471 0.96219 0.91118 1.07063 1.21008 0.94270 0.96940 0.96043 1.21140 0.93980 0.98355 1.03408 1.21162 1.00952 0.90297 0.93086 1.20304 0.91418 0.96638 1.09771 1.17702 0.91049 0.85129 0.98069 1.40925 1.10829 1.03147 1.65612 0.74075 1.22178 0.94334 0.88594 0.87179 1.21931 0.92060 0.96119 1.23155 1.17318 0.86822 0.82653 0.77217 1.90845 1.13109 1.86752 1.49261 1.45577 1.10691 1.04774 1.75880 1.20922 0.95171 0.82079 1.03422 1.19753 0.89331 0.83930 0.85465 1.90459 1.18760 1.81960 1.57769 1.41804 1.10151 1.03898 1.62426 1.19715 0.90491 0.84935 1.48352 0.87693 1.25338 0.97118 0.98515 0.96803 1.69619 1.15189 1.19367 1.49145 0.85811 0.80164 0.79549 0.78464 1.20276 1.20796 1.19355 1.19325 0.88513 0.86121 0.74766 1.90749 1.14152 1.88310 1.39220 0.90568 0.90378 0.91911 0.85023 0.84993 0.84110 0.81017 0.76008 0.89758 0.89762 0.76954 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.38 9.56 36.01 0.34 -0.03 16 2 C -0.14 -0.87 5.90 -104.42 -0.62 -1.49 16 3 C -0.06 -0.38 9.66 -39.56 -0.38 -0.76 16 4 C -0.15 -1.06 10.03 -39.57 -0.40 -1.46 16 5 C -0.04 -0.37 9.65 -39.30 -0.38 -0.75 16 6 C -0.18 -2.10 5.89 -104.81 -0.62 -2.72 16 7 C 0.18 1.60 6.64 -83.94 -0.56 1.04 16 8 N -0.60 -4.17 5.14 -10.42 -0.05 -4.23 16 9 H 0.42 1.43 6.67 -40.82 -0.27 1.16 16 10 C 0.21 1.98 10.65 -16.73 -0.18 1.80 16 11 C -0.32 -4.66 6.04 -102.78 -0.62 -5.28 16 12 C 0.57 10.34 7.76 -12.65 -0.10 10.24 16 13 O -0.52 -11.69 15.55 -14.89 -0.23 -11.92 16 14 N -0.71 -12.14 5.48 -62.66 -0.34 -12.48 16 15 C 0.11 2.12 6.15 -5.19 -0.03 2.08 16 16 C 0.43 9.76 7.85 -10.99 -0.09 9.67 16 17 O -0.60 -14.87 15.24 5.54 0.08 -14.79 16 18 N -0.55 -13.58 5.29 -10.96 -0.06 -13.63 16 19 C -0.31 -8.23 9.68 -14.93 -0.14 -8.38 16 20 H 0.11 2.92 7.16 -52.48 -0.38 2.55 16 21 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 22 N -0.89 -23.88 13.05 55.50 0.72 -23.16 16 23 Si 0.93 20.38 29.55 -169.99 -5.02 15.36 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 27 C 0.43 6.84 7.15 -32.20 -0.23 6.61 16 28 O -0.45 -8.85 15.85 -15.08 -0.24 -9.09 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 0.18 8.08 -51.93 -0.42 -0.24 16 31 H 0.06 0.14 6.56 -51.93 -0.34 -0.20 16 32 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16 33 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 34 H 0.14 1.42 7.79 -52.49 -0.41 1.01 16 35 H 0.17 1.20 6.31 -52.48 -0.33 0.87 16 36 H 0.40 6.12 5.44 -40.82 -0.22 5.90 16 37 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.40 9.52 7.90 -40.82 -0.32 9.20 16 40 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 349.35 15.07 5.26 5.26 Total: -1.00 -37.19 349.35 -7.91 -45.10 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -3.94 Total: 12.41 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: -4.09 Total: 11.16 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.27 Total: -53.50 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -0.39 Total: -35.80 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -37.19 -7.91 -45.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359971520.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.813 kcal (2) G-P(sol) polarization free energy of solvation -37.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds