Wall clock time and date at job start Tue Mar 31 2020 05:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 116.99607 * 2 1 4 4 O 1.20825 * 120.00121 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99769 * 179.97438 * 3 2 1 6 6 N 1.46505 * 109.46931 * 180.02562 * 5 3 2 7 7 C 1.36937 * 119.99697 * 276.49145 * 6 5 3 8 8 H 1.08004 * 119.99907 * 179.57208 * 7 6 5 9 9 C 1.38812 * 120.00179 * 359.57161 * 7 6 5 10 10 N 1.31621 * 119.99951 * 27.80383 * 9 7 6 11 11 Si 1.86793 * 120.00029 * 207.80313 * 9 7 6 12 12 H 1.48504 * 109.47078 * 90.00415 * 11 9 7 13 13 H 1.48495 * 109.47439 * 209.99810 * 11 9 7 14 14 H 1.48495 * 109.47537 * 330.00064 * 11 9 7 15 15 C 1.46503 * 120.00257 * 96.49522 * 6 5 3 16 16 C 1.52993 * 109.47061 * 269.99960 * 15 6 5 17 17 H 1.09001 * 109.47224 * 304.99841 * 16 15 6 18 18 O 1.42905 * 109.47374 * 64.99948 * 16 15 6 19 19 C 1.52996 * 109.47239 * 185.00005 * 16 15 6 20 20 O 1.42896 * 109.47789 * 174.99907 * 19 16 15 21 21 C 1.42895 * 114.00759 * 180.02562 * 20 19 16 22 22 C 1.50693 * 109.47391 * 180.02562 * 21 20 19 23 23 C 1.33384 * 125.20512 * 89.99912 * 22 21 20 24 24 C 1.38430 * 114.92629 * 179.97438 * 23 22 21 25 25 C 1.33393 * 114.91655 * 0.02562 * 24 23 22 26 26 S 1.75884 * 109.59195 * 359.75637 * 25 24 23 27 27 H 1.09000 * 109.47353 * 299.99753 * 1 2 3 28 28 H 1.08996 * 109.47134 * 60.00350 * 1 2 3 29 29 H 1.09009 * 109.46781 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47432 * 60.00234 * 5 3 2 31 31 H 1.08997 * 109.47280 * 299.99663 * 5 3 2 32 32 H 0.96999 * 120.00018 * 180.02562 * 10 9 7 33 33 H 1.09002 * 109.47010 * 149.99420 * 15 6 5 34 34 H 1.09001 * 109.46510 * 29.99853 * 15 6 5 35 35 H 0.96701 * 113.99784 * 59.99486 * 18 16 15 36 36 H 1.08998 * 109.47319 * 54.99444 * 19 16 15 37 37 H 1.09007 * 109.47037 * 295.00062 * 19 16 15 38 38 H 1.09004 * 109.46974 * 300.00460 * 21 20 19 39 39 H 1.09003 * 109.47110 * 59.99497 * 21 20 19 40 40 H 1.08001 * 122.54298 * 359.95869 * 23 22 21 41 41 H 1.07999 * 122.54467 * 180.02562 * 24 23 22 42 42 H 1.08000 * 125.20506 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 7 3.9815 2.6799 0.0011 7 6 4.0475 3.3747 -1.1771 8 1 4.3470 4.4124 -1.1760 9 6 3.7294 2.7454 -2.3728 10 7 2.8813 1.7389 -2.3814 11 14 4.5049 3.3271 -3.9695 12 1 5.7705 2.5863 -4.2037 13 1 3.5690 3.0759 -5.0947 14 1 4.7919 4.7812 -3.8795 15 6 4.3264 3.3414 1.2619 16 6 3.0719 3.9779 1.8636 17 1 2.6172 4.6462 1.1324 18 8 2.1403 2.9534 2.2166 19 6 3.4531 4.7734 3.1137 20 8 2.3033 5.4623 3.6090 21 6 2.5521 6.2404 4.7815 22 6 1.2778 6.9186 5.2140 23 6 0.3813 6.4049 6.0575 24 6 -0.7143 7.2131 6.3078 25 6 -0.7078 8.3830 5.6669 26 16 0.7484 8.5116 4.6889 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 3.9564 0.7807 -0.8891 31 1 3.9556 0.7811 0.8908 32 1 2.6594 1.2989 -3.2169 33 1 5.0719 4.1142 1.0747 34 1 4.7311 2.6072 1.9585 35 1 2.4785 2.3208 2.8652 36 1 4.2292 5.4961 2.8618 37 1 3.8258 4.0919 3.8784 38 1 2.9064 5.5896 5.5810 39 1 3.3093 6.9936 4.5638 40 1 0.5010 5.4320 6.5109 41 1 -1.5139 6.9188 6.9715 42 1 -1.4767 9.1378 5.7409 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362355802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:31 Heat of formation + Delta-G solvation = -104.695785 kcal Electronic energy + Delta-G solvation = -26467.792611 eV Core-core repulsion = 22541.884563 eV Total energy + Delta-G solvation = -3925.908048 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 13.32 seconds Orbital eigenvalues (eV) -38.79086 -38.48663 -37.65891 -36.49729 -35.08952 -34.13829 -31.58088 -31.13412 -29.46817 -27.80838 -26.29952 -25.82598 -25.06506 -23.00764 -22.17496 -20.79343 -19.56404 -19.40006 -17.44041 -17.08554 -16.56570 -16.08197 -15.94598 -15.67504 -15.42723 -15.14144 -14.88167 -14.49570 -14.29861 -14.00715 -13.54046 -13.14908 -13.04312 -12.92076 -12.65016 -12.47061 -12.08467 -11.98733 -11.67217 -11.63640 -11.42121 -10.94913 -10.88049 -10.85333 -10.72968 -10.39817 -10.23202 -10.13010 -9.93597 -9.62705 -9.51608 -9.24427 -8.89627 -8.67683 -8.56962 -8.34060 -7.11817 -5.93169 -3.14665 0.81230 1.51046 1.89037 2.58308 3.37811 3.44985 3.47200 3.86450 4.17504 4.31618 4.53328 4.73185 4.90881 4.98938 5.07883 5.20527 5.25949 5.28174 5.42252 5.42989 5.46140 5.62258 5.74571 5.91120 5.97747 5.98156 6.02281 6.07115 6.13916 6.29090 6.34197 6.38808 6.42638 6.79114 6.90953 7.21133 7.29217 7.70385 8.04579 8.17151 8.42194 9.03055 9.64579 9.82797 10.12528 11.18003 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014338 B = 0.003062 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.428727 B = 9142.538714 C =10015.617774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.390 6.390 3 C 0.465 3.535 4 O -0.480 6.480 5 C 0.191 3.809 6 N -0.562 5.562 7 C -0.254 4.254 8 H 0.082 0.918 9 C 0.004 3.996 10 N -0.897 5.897 11 Si 0.905 3.095 12 H -0.287 1.287 13 H -0.294 1.294 14 H -0.280 1.280 15 C 0.123 3.877 16 C 0.090 3.910 17 H 0.104 0.896 18 O -0.525 6.525 19 C 0.029 3.971 20 O -0.367 6.367 21 C 0.130 3.870 22 C -0.175 4.175 23 C -0.121 4.121 24 C -0.137 4.137 25 C -0.215 4.215 26 S 0.113 5.887 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.045 0.955 32 H 0.258 0.742 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.346 0.654 36 H 0.053 0.947 37 H 0.045 0.955 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.715 5.768 16.903 17.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.308 6.308 3 C 0.304 3.696 4 O -0.362 6.362 5 C 0.063 3.937 6 N -0.281 5.281 7 C -0.382 4.382 8 H 0.100 0.900 9 C -0.194 4.194 10 N -0.542 5.542 11 Si 0.735 3.265 12 H -0.214 1.214 13 H -0.220 1.220 14 H -0.206 1.206 15 C -0.005 4.005 16 C 0.027 3.973 17 H 0.122 0.878 18 O -0.326 6.326 19 C -0.048 4.048 20 O -0.286 6.286 21 C 0.051 3.949 22 C -0.293 4.293 23 C -0.152 4.152 24 C -0.168 4.168 25 C -0.351 4.351 26 S 0.377 5.623 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.128 0.872 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.189 0.811 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.158 0.842 41 H 0.158 0.842 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.963 7.462 15.240 16.996 hybrid contribution -0.295 -0.824 0.490 1.003 sum -1.258 6.638 15.730 17.119 Atomic orbital electron populations 1.22750 0.80375 1.00663 1.01069 1.86521 1.20523 1.37413 1.86356 1.25045 0.93022 0.80260 0.71295 1.90497 1.66057 1.36017 1.43611 1.20605 0.86241 0.86089 1.00811 1.44279 1.74111 1.07716 1.01986 1.19282 1.39883 0.96012 0.83017 0.89983 1.24712 0.98141 0.98503 0.97996 1.69889 1.31360 1.26513 1.26422 0.86217 0.79091 0.78166 0.83018 1.21380 1.22031 1.20584 1.21536 0.94321 0.96257 0.88403 1.22920 0.93300 0.88780 0.92296 0.87779 1.86950 1.41345 1.41001 1.63275 1.23562 0.88227 0.95463 0.97580 1.88150 1.34324 1.63777 1.42382 1.20692 0.91420 0.93620 0.89118 1.24212 1.02233 0.98832 1.03979 1.20164 0.93757 1.01147 1.00120 1.20167 0.99786 0.94223 1.02608 1.25671 1.02576 1.02780 1.04043 1.84314 1.15914 1.15469 1.46611 0.93705 0.93301 0.90730 0.87224 0.93688 0.93156 0.91854 0.93458 0.81107 0.92912 0.93635 0.91725 0.92589 0.84195 0.84239 0.81889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.90 10.56 101.05 1.07 1.97 16 2 O -0.39 -8.92 10.57 -39.25 -0.41 -9.34 16 3 C 0.47 11.62 4.97 36.00 0.18 11.80 16 4 O -0.48 -13.51 13.30 -26.25 -0.35 -13.86 16 5 C 0.19 4.45 5.46 -5.19 -0.03 4.42 16 6 N -0.56 -13.24 2.05 -174.61 -0.36 -13.60 16 7 C -0.25 -6.70 9.50 -15.06 -0.14 -6.84 16 8 H 0.08 2.13 7.97 -52.48 -0.42 1.71 16 9 C 0.00 0.12 4.98 -17.43 -0.09 0.03 16 10 N -0.90 -25.36 8.76 55.49 0.49 -24.87 16 11 Si 0.91 21.46 29.63 -169.99 -5.04 16.43 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 C 0.12 2.27 5.36 -4.04 -0.02 2.25 16 16 C 0.09 1.69 3.25 -26.74 -0.09 1.60 16 17 H 0.10 2.44 8.14 -51.93 -0.42 2.01 16 18 O -0.52 -10.70 9.69 -61.55 -0.60 -11.29 16 19 C 0.03 0.43 5.57 37.16 0.21 0.64 16 20 O -0.37 -6.02 10.29 -40.08 -0.41 -6.43 16 21 C 0.13 1.62 6.43 36.00 0.23 1.85 16 22 C -0.18 -2.23 6.14 -36.01 -0.22 -2.45 16 23 C -0.12 -1.41 10.05 -41.21 -0.41 -1.83 16 24 C -0.14 -1.42 10.18 -41.20 -0.42 -1.84 16 25 C -0.21 -2.18 11.23 29.04 0.33 -1.86 16 26 S 0.11 1.32 23.33 -107.50 -2.51 -1.19 16 27 H 0.04 0.85 8.13 -51.93 -0.42 0.43 16 28 H 0.05 1.02 8.13 -51.93 -0.42 0.59 16 29 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 30 H 0.11 2.78 6.23 -51.93 -0.32 2.45 16 31 H 0.05 0.88 7.82 -51.93 -0.41 0.48 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.06 1.10 8.04 -51.93 -0.42 0.68 16 34 H 0.05 0.74 7.85 -51.93 -0.41 0.33 16 35 H 0.35 5.61 9.05 45.56 0.41 6.02 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.56 8.14 -51.92 -0.42 0.13 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 367.17 15.07 5.53 5.53 Total: -1.00 -34.04 367.17 -8.41 -42.46 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.35 Total: 6.40 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 0.59 Total: 9.76 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.13 Total: -38.47 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -1.77 Total: -40.92 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.04 Total: 16.43 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.51 Total: -1.19 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.04 -8.41 -42.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362355802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.240 kcal (2) G-P(sol) polarization free energy of solvation -34.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.32 seconds