Wall clock time and date at job start Tue Mar 31 2020 05:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 117.00011 * 2 1 4 4 O 1.20826 * 119.99872 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00025 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.46862 * 179.97438 * 5 3 2 7 7 C 1.36941 * 119.99806 * 269.99302 * 6 5 3 8 8 H 1.08006 * 119.99651 * 188.15887 * 7 6 5 9 9 C 1.38808 * 120.00270 * 8.16592 * 7 6 5 10 10 N 1.31624 * 119.99642 * 25.28872 * 9 7 6 11 11 Si 1.86797 * 120.00213 * 205.29076 * 9 7 6 12 12 H 1.48502 * 109.46861 * 89.99952 * 11 9 7 13 13 H 1.48501 * 109.47136 * 209.99813 * 11 9 7 14 14 H 1.48497 * 109.46779 * 330.00155 * 11 9 7 15 15 C 1.46500 * 120.00054 * 89.99957 * 6 5 3 16 16 C 1.53007 * 109.47140 * 94.74101 * 15 6 5 17 17 H 1.08998 * 109.46744 * 60.00309 * 16 15 6 18 18 O 1.42898 * 109.46776 * 300.00036 * 16 15 6 19 19 C 1.53002 * 109.46895 * 180.02562 * 16 15 6 20 20 O 1.42896 * 109.46762 * 185.00013 * 19 16 15 21 21 C 1.42900 * 113.99971 * 179.97438 * 20 19 16 22 22 C 1.50699 * 109.47504 * 179.97438 * 21 20 19 23 23 C 1.33393 * 125.19671 * 89.99890 * 22 21 20 24 24 C 1.38432 * 114.91684 * 179.97438 * 23 22 21 25 25 C 1.33386 * 114.92017 * 359.97438 * 24 23 22 26 26 S 1.75880 * 125.20793 * 269.69887 * 22 21 20 27 27 H 1.08997 * 109.46860 * 60.00364 * 1 2 3 28 28 H 1.08997 * 109.47238 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47348 * 300.00760 * 1 2 3 30 30 H 1.08997 * 109.47326 * 59.99560 * 5 3 2 31 31 H 1.08999 * 109.46892 * 299.99656 * 5 3 2 32 32 H 0.97002 * 119.99659 * 180.02562 * 10 9 7 33 33 H 1.08995 * 109.47179 * 334.74084 * 15 6 5 34 34 H 1.08996 * 109.47044 * 214.73873 * 15 6 5 35 35 H 0.96698 * 114.00089 * 299.99790 * 18 16 15 36 36 H 1.08999 * 109.47054 * 304.99912 * 19 16 15 37 37 H 1.08998 * 109.46970 * 65.00068 * 19 16 15 38 38 H 1.09004 * 109.47369 * 300.00016 * 21 20 19 39 39 H 1.09008 * 109.47096 * 59.99675 * 21 20 19 40 40 H 1.08001 * 122.54337 * 359.96110 * 23 22 21 41 41 H 1.07993 * 122.53726 * 180.02562 * 24 23 22 42 42 H 1.08003 * 125.20072 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.1755 3.3360 -1.1873 8 1 4.6067 4.3263 -1.1924 9 6 3.8177 2.7286 -2.3830 10 7 2.8810 1.8041 -2.3970 11 14 4.6655 3.2234 -3.9723 12 1 5.8609 2.3678 -4.1827 13 1 3.7262 3.0497 -5.1093 14 1 5.0835 4.6458 -3.8882 15 6 4.1898 3.3825 1.2674 16 6 5.6702 3.3187 1.6489 17 1 6.2670 3.7918 0.8692 18 8 6.0671 1.9532 1.7901 19 6 5.8874 4.0521 2.9740 20 8 7.2843 4.0935 3.2721 21 6 7.5980 4.7612 4.4959 22 6 9.0897 4.7448 4.7091 23 6 9.9380 5.6808 4.2804 24 6 11.2664 5.4523 4.5954 25 6 11.4969 4.3312 5.2803 26 16 9.9777 3.4927 5.5677 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.9558 0.7809 -0.8907 31 1 3.9564 0.7806 0.8892 32 1 2.6312 1.3794 -3.2326 33 1 3.5929 2.9094 2.0471 34 1 3.8870 4.4240 1.1596 35 1 5.5765 1.4691 2.4684 36 1 5.5027 5.0688 2.8939 37 1 5.3613 3.5263 3.7708 38 1 7.2489 5.7926 4.4469 39 1 7.1072 4.2505 5.3246 40 1 9.6130 6.5508 3.7291 41 1 12.0563 6.1308 4.3090 42 1 12.4674 3.9921 5.6113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362355803.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:44 Heat of formation + Delta-G solvation = -111.202598 kcal Electronic energy + Delta-G solvation = -25810.886123 eV Core-core repulsion = 21884.695918 eV Total energy + Delta-G solvation = -3926.190205 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -38.98578 -38.64734 -37.78208 -36.61344 -35.33671 -34.31940 -31.64074 -31.18045 -29.60617 -27.94010 -26.37419 -25.93355 -25.11254 -23.06220 -22.27475 -20.93025 -19.74254 -19.45890 -17.50636 -17.14827 -16.64711 -16.25651 -16.12217 -15.85523 -15.47473 -15.25306 -15.04448 -14.64380 -14.45701 -14.08753 -13.54146 -13.23342 -13.17369 -12.96039 -12.81460 -12.55928 -12.27762 -12.16338 -11.78338 -11.70111 -11.40603 -11.09168 -10.98099 -10.91299 -10.79664 -10.51845 -10.36266 -10.10319 -9.93878 -9.75888 -9.62595 -9.58833 -9.09066 -8.91965 -8.62224 -8.46720 -7.08542 -5.93062 -3.18860 0.75601 1.45496 1.83499 2.52755 3.39227 3.46793 3.47313 3.71618 3.90485 4.08502 4.47934 4.66554 4.85368 4.91638 4.95623 5.15757 5.18150 5.31912 5.34168 5.37623 5.41177 5.52237 5.68032 5.80307 5.85185 5.86817 5.91885 5.92720 6.08624 6.10927 6.28870 6.33958 6.45344 6.64939 6.75953 7.13359 7.19116 7.66633 7.79501 8.14177 8.21639 9.01163 9.40002 9.71165 10.10897 11.18360 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015441 B = 0.002675 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.880299 B =10463.321302 C =11647.459962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.382 6.382 3 C 0.465 3.535 4 O -0.512 6.512 5 C 0.194 3.806 6 N -0.558 5.558 7 C -0.253 4.253 8 H 0.082 0.918 9 C 0.002 3.998 10 N -0.902 5.902 11 Si 0.908 3.092 12 H -0.285 1.285 13 H -0.294 1.294 14 H -0.280 1.280 15 C 0.125 3.875 16 C 0.091 3.909 17 H 0.106 0.894 18 O -0.542 6.542 19 C 0.030 3.970 20 O -0.369 6.369 21 C 0.130 3.870 22 C -0.176 4.176 23 C -0.121 4.121 24 C -0.137 4.137 25 C -0.215 4.215 26 S 0.114 5.886 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.115 0.885 31 H 0.054 0.946 32 H 0.258 0.742 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.359 0.641 36 H 0.057 0.943 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.622 2.522 16.542 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.300 6.300 3 C 0.305 3.695 4 O -0.397 6.397 5 C 0.065 3.935 6 N -0.276 5.276 7 C -0.382 4.382 8 H 0.099 0.901 9 C -0.195 4.195 10 N -0.548 5.548 11 Si 0.738 3.262 12 H -0.212 1.212 13 H -0.220 1.220 14 H -0.205 1.205 15 C -0.003 4.003 16 C 0.029 3.971 17 H 0.124 0.876 18 O -0.345 6.345 19 C -0.047 4.047 20 O -0.288 6.288 21 C 0.052 3.948 22 C -0.294 4.294 23 C -0.152 4.152 24 C -0.168 4.168 25 C -0.350 4.350 26 S 0.378 5.622 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.132 0.868 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.204 0.796 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 9.485 1.521 16.516 19.106 hybrid contribution -0.206 1.711 -1.143 2.068 sum 9.279 3.232 15.372 18.244 Atomic orbital electron populations 1.22841 0.80037 1.01238 1.01151 1.86557 1.20815 1.36854 1.85740 1.25715 0.93647 0.80120 0.70003 1.90451 1.66768 1.36550 1.45918 1.20438 0.84877 0.86367 1.01838 1.43771 1.75085 1.07543 1.01210 1.19261 1.34920 1.01112 0.82870 0.90063 1.24713 0.97426 0.99363 0.98020 1.69849 1.27780 1.30660 1.26478 0.86187 0.79223 0.78122 0.82689 1.21243 1.22020 1.20533 1.21314 0.92141 0.97825 0.89012 1.22831 0.98804 0.81901 0.93600 0.87611 1.86681 1.64156 1.22681 1.61017 1.23441 0.81674 1.00624 0.98979 1.88103 1.24297 1.77633 1.38763 1.20700 0.88487 0.97423 0.88200 1.24208 0.98973 0.99220 1.06961 1.20190 0.92430 1.00893 1.01711 1.20172 0.97019 0.98319 1.01275 1.25679 1.01634 1.00177 1.07560 1.84293 0.98100 1.25475 1.54317 0.92907 0.90191 0.93767 0.86779 0.92793 0.93184 0.93697 0.92353 0.79576 0.92526 0.93365 0.91550 0.92512 0.84130 0.84222 0.81880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.56 101.05 1.07 1.83 16 2 O -0.38 -8.37 10.57 -39.26 -0.41 -8.78 16 3 C 0.46 11.38 6.03 36.01 0.22 11.60 16 4 O -0.51 -14.07 15.92 -18.75 -0.30 -14.37 16 5 C 0.19 4.53 5.31 -5.19 -0.03 4.50 16 6 N -0.56 -13.31 1.91 -174.61 -0.33 -13.64 16 7 C -0.25 -6.75 9.70 -15.06 -0.15 -6.89 16 8 H 0.08 2.12 7.95 -52.48 -0.42 1.70 16 9 C 0.00 0.06 4.89 -17.43 -0.09 -0.02 16 10 N -0.90 -25.61 8.99 55.49 0.50 -25.11 16 11 Si 0.91 21.80 29.62 -169.99 -5.04 16.76 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 C 0.13 2.38 5.34 -4.04 -0.02 2.36 16 16 C 0.09 1.54 3.50 -26.73 -0.09 1.44 16 17 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 18 O -0.54 -9.52 12.42 -40.11 -0.50 -10.02 16 19 C 0.03 0.41 5.57 37.16 0.21 0.62 16 20 O -0.37 -5.41 10.29 -40.11 -0.41 -5.82 16 21 C 0.13 1.48 6.43 36.00 0.23 1.71 16 22 C -0.18 -2.03 6.14 -36.00 -0.22 -2.25 16 23 C -0.12 -1.29 10.05 -41.20 -0.41 -1.71 16 24 C -0.14 -1.29 10.18 -41.21 -0.42 -1.71 16 25 C -0.21 -1.96 11.23 29.04 0.33 -1.64 16 26 S 0.11 1.19 23.33 -107.50 -2.51 -1.32 16 27 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.04 0.75 8.13 -51.93 -0.42 0.32 16 30 H 0.11 2.94 6.28 -51.93 -0.33 2.61 16 31 H 0.05 1.07 7.43 -51.93 -0.39 0.68 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.04 0.79 8.04 -51.93 -0.42 0.37 16 34 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 35 H 0.36 4.90 8.95 45.56 0.41 5.31 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 42 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 373.63 15.07 5.63 5.63 Total: -1.00 -33.83 373.63 -8.10 -41.92 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.34 Total: 4.91 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 0.62 Total: 9.84 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.16 Total: -38.75 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -1.62 Total: -38.99 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.04 Total: 16.76 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.51 Total: -1.32 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.83 -8.10 -41.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362355803.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.280 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds