Wall clock time and date at job start Tue Mar 31 2020 07:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47103 * 2 1 4 4 N 1.46499 * 109.47108 * 179.97438 * 3 2 1 5 5 C 1.37102 * 120.00000 * 265.56685 * 4 3 2 6 6 H 1.07995 * 119.99872 * 145.67424 * 5 4 3 7 7 C 1.38939 * 119.99814 * 325.67004 * 5 4 3 8 8 N 1.31419 * 120.00309 * 338.40698 * 7 5 4 9 9 Si 1.86806 * 119.99983 * 158.41050 * 7 5 4 10 10 H 1.48494 * 109.47033 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47551 * 120.00167 * 9 7 5 12 12 H 1.48500 * 109.47007 * 240.00132 * 9 7 5 13 13 C 1.34779 * 119.99902 * 85.56358 * 4 3 2 14 14 O 1.21292 * 119.99794 * 0.02562 * 13 4 3 15 15 C 1.50702 * 120.00036 * 180.02562 * 13 4 3 16 16 C 1.50692 * 109.47310 * 179.97438 * 15 13 4 17 17 C 1.34849 * 125.89026 * 84.97711 * 16 15 13 18 18 C 1.40893 * 107.42176 * 180.02562 * 17 16 15 19 19 S 1.76199 * 126.29359 * 179.97438 * 18 17 16 20 20 N 1.65607 * 107.21438 * 90.00142 * 19 18 17 21 21 O 1.42102 * 106.40028 * 203.53840 * 19 18 17 22 22 O 1.42097 * 106.40488 * 336.46334 * 19 18 17 23 23 C 1.34857 * 107.41153 * 359.73449 * 18 17 16 24 24 N 1.36340 * 108.21732 * 0.42457 * 23 18 17 25 25 C 1.46497 * 125.63160 * 179.82835 * 24 23 18 26 26 H 1.08996 * 109.47064 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47127 * 299.99951 * 1 2 3 28 28 H 1.08995 * 109.47035 * 59.99731 * 1 2 3 29 29 H 1.08997 * 109.47003 * 239.99646 * 2 1 3 30 30 H 1.09002 * 109.46661 * 120.00213 * 2 1 3 31 31 H 1.09004 * 109.47089 * 60.00026 * 3 2 1 32 32 H 1.09000 * 109.46983 * 300.00199 * 3 2 1 33 33 H 0.96995 * 119.99770 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.46954 * 59.99853 * 15 13 4 35 35 H 1.08999 * 109.47232 * 300.00231 * 15 13 4 36 36 H 1.08007 * 126.29407 * 0.02562 * 17 16 15 37 37 H 0.97000 * 120.00028 * 359.97438 * 20 19 18 38 38 H 0.97002 * 119.99157 * 180.02562 * 20 19 18 39 39 H 1.08001 * 125.88602 * 180.25667 * 23 18 17 40 40 H 1.08998 * 109.47695 * 269.69546 * 25 24 23 41 41 H 1.09005 * 109.47153 * 149.69704 * 25 24 23 42 42 H 1.08998 * 109.47637 * 29.70045 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.5344 1.1847 6 1 5.1289 1.0149 1.3071 7 6 3.6764 2.2960 2.2270 8 7 2.8017 3.2449 1.9787 9 14 4.2292 1.9714 3.9816 10 1 5.2120 0.8583 3.9930 11 1 4.8606 3.1956 4.5363 12 1 3.0538 1.6017 4.8105 13 6 4.1794 1.3520 -1.1628 14 8 3.5733 1.2711 -2.2103 15 6 5.6864 1.3514 -1.1622 16 6 6.1893 1.2408 -2.5784 17 6 6.3634 2.2653 -3.4377 18 6 6.8455 1.7249 -4.6463 19 16 7.2415 2.6265 -6.1074 20 7 8.8374 3.0558 -6.0010 21 8 7.1446 1.7059 -7.1856 22 8 6.4961 3.8348 -6.0477 23 6 6.9532 0.3912 -4.4774 24 7 6.5463 0.0876 -3.2121 25 6 6.5053 -1.2552 -2.6279 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 2.4429 3.7763 2.7064 34 1 6.0491 0.5037 -0.5809 35 1 6.0499 2.2783 -0.7185 36 1 6.1691 3.3085 -3.2366 37 1 9.3579 2.7993 -5.2237 38 1 9.2514 3.5644 -6.7158 39 1 7.2993 -0.3147 -5.2178 40 1 5.5300 -1.7039 -2.8163 41 1 6.6732 -1.1891 -1.5529 42 1 7.2823 -1.8719 -3.0796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362583664.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:44 Heat of formation + Delta-G solvation = -65.596039 kcal Electronic energy + Delta-G solvation = -26517.848249 eV Core-core repulsion = 22625.928444 eV Total energy + Delta-G solvation = -3891.919805 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -41.22987 -38.52478 -36.80260 -35.52677 -35.17040 -33.10995 -32.95263 -32.90591 -31.65154 -31.01771 -27.00245 -26.56492 -25.59677 -24.22433 -21.51063 -20.96862 -19.68562 -19.17524 -18.95034 -17.76380 -17.19653 -16.82190 -16.36366 -16.01096 -15.26816 -15.11090 -14.90143 -14.77258 -14.35745 -14.26804 -13.84548 -13.56977 -12.83519 -12.74951 -12.52112 -12.41724 -12.28986 -12.10247 -11.94382 -11.82588 -11.69538 -11.61699 -11.52042 -11.36621 -11.10839 -11.02401 -10.78049 -10.72001 -10.40933 -10.40270 -10.32581 -9.79486 -9.18801 -8.97175 -8.55401 -7.90489 -7.59963 -6.46303 -4.15380 0.74852 1.99752 2.75996 2.96747 3.02442 3.14415 3.16558 3.57406 3.81682 3.95785 4.02098 4.67518 4.71275 4.85077 4.91519 4.99345 5.12244 5.24321 5.41560 5.60434 5.74265 5.77439 5.87276 5.95579 6.03575 6.14049 6.21223 6.27609 6.29487 6.48283 6.50067 6.64969 6.77652 6.99753 7.05850 7.06769 7.20607 7.26827 7.38386 7.44550 7.84246 8.27642 8.98349 9.43824 9.87569 10.54207 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015977 B = 0.003299 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.134988 B = 8485.929003 C = 8904.668073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.114 3.886 4 N -0.437 5.437 5 C -0.345 4.345 6 H 0.089 0.911 7 C 0.045 3.955 8 N -0.853 5.853 9 Si 0.912 3.088 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.467 3.533 14 O -0.594 6.594 15 C -0.058 4.058 16 C 0.055 3.945 17 C -0.107 4.107 18 C -0.739 4.739 19 S 2.729 3.271 20 N -1.255 6.255 21 O -0.982 6.982 22 O -0.969 6.969 23 C 0.105 3.895 24 N -0.426 5.426 25 C 0.064 3.936 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.108 0.892 32 H 0.052 0.948 33 H 0.270 0.730 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.149 0.851 37 H 0.415 0.585 38 H 0.414 0.586 39 H 0.177 0.823 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.920 -6.114 -5.801 13.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C -0.009 4.009 4 N -0.155 5.155 5 C -0.473 4.473 6 H 0.107 0.893 7 C -0.161 4.161 8 N -0.489 5.489 9 Si 0.739 3.261 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.205 1.205 13 C 0.255 3.745 14 O -0.479 6.479 15 C -0.098 4.098 16 C -0.056 4.056 17 C -0.130 4.130 18 C -0.836 4.836 19 S 2.819 3.181 20 N -0.927 5.927 21 O -0.971 6.971 22 O -0.958 6.958 23 C -0.034 4.034 24 N -0.099 5.099 25 C -0.077 4.077 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.126 0.874 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.130 0.870 36 H 0.166 0.834 37 H 0.241 0.759 38 H 0.243 0.757 39 H 0.195 0.805 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.668 -6.186 -6.698 13.289 hybrid contribution 0.698 -0.396 1.804 1.974 sum 10.365 -6.583 -4.895 13.219 Atomic orbital electron populations 1.21656 0.96564 1.00412 1.01479 1.21819 0.94771 0.99534 1.01008 1.21464 0.81290 0.94453 1.03733 1.43476 1.04828 1.62618 1.04628 1.19429 1.07788 1.29924 0.90143 0.89303 1.25328 0.96931 0.93486 1.00391 1.69940 1.29685 1.16379 1.32915 0.86118 0.78798 0.78569 0.82650 1.19247 1.20628 1.20461 1.20157 0.88594 0.81752 0.84020 1.90581 1.70011 1.55755 1.31564 1.20023 0.95486 1.04866 0.89431 1.20212 1.04631 0.84499 0.96229 1.20168 1.03555 0.99005 0.90274 1.30308 1.27914 1.05217 1.20155 1.00416 0.71815 0.73385 0.72480 1.53195 1.32467 1.74349 1.32735 1.93548 1.85789 1.65216 1.52555 1.93577 1.69556 1.46100 1.86607 1.21527 1.00403 0.94873 0.86586 1.44257 1.47474 1.07206 1.10961 1.22155 1.03853 0.81134 1.00574 0.93677 0.92952 0.93085 0.93143 0.92490 0.87422 0.92966 0.91920 0.89785 0.87031 0.83367 0.75852 0.75703 0.80542 0.90173 0.89238 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.91 37.16 0.37 -2.05 16 2 C -0.13 -2.67 6.23 -26.73 -0.17 -2.84 16 3 C 0.11 2.69 4.92 -4.04 -0.02 2.67 16 4 N -0.44 -10.56 2.55 -114.82 -0.29 -10.85 16 5 C -0.35 -8.19 8.70 -14.93 -0.13 -8.31 16 6 H 0.09 1.96 6.98 -52.49 -0.37 1.60 16 7 C 0.05 1.08 4.94 -17.47 -0.09 0.99 16 8 N -0.85 -21.69 11.31 55.50 0.63 -21.06 16 9 Si 0.91 18.34 29.60 -169.99 -5.03 13.31 16 10 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 11 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 12 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 13 C 0.47 10.93 7.60 -10.98 -0.08 10.85 16 14 O -0.59 -15.61 15.69 5.55 0.09 -15.52 16 15 C -0.06 -1.08 4.63 -29.04 -0.13 -1.21 16 16 C 0.05 0.97 5.38 -81.79 -0.44 0.53 16 17 C -0.11 -1.90 10.58 -39.78 -0.42 -2.32 16 18 C -0.74 -11.19 6.17 -39.78 -0.25 -11.43 16 19 S 2.73 36.98 6.43 -107.50 -0.69 36.29 16 20 N -1.25 -10.66 9.55 60.35 0.58 -10.08 16 21 O -0.98 -15.49 17.86 -57.17 -1.02 -16.51 16 22 O -0.97 -17.17 17.89 -57.17 -1.02 -18.19 16 23 C 0.11 1.44 11.19 -16.75 -0.19 1.25 16 24 N -0.43 -6.26 3.15 -119.90 -0.38 -6.64 16 25 C 0.06 0.69 10.91 59.85 0.65 1.34 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.11 2.68 5.34 -51.93 -0.28 2.40 16 32 H 0.05 1.31 7.56 -51.93 -0.39 0.91 16 33 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 34 H 0.08 1.38 6.42 -51.93 -0.33 1.04 16 35 H 0.11 2.05 8.10 -51.93 -0.42 1.63 16 36 H 0.15 2.63 8.06 -52.48 -0.42 2.21 16 37 H 0.42 2.63 8.92 -34.48 -0.31 2.32 16 38 H 0.41 2.69 8.96 -34.47 -0.31 2.38 16 39 H 0.18 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 0.90 6.94 -51.93 -0.36 0.54 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 367.15 15.07 5.53 5.53 Total: -1.00 -35.76 367.15 -8.21 -43.97 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -5.71 Total: 10.27 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -0.89 Total: -10.52 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.53 Total: -48.63 kcal Atomic # 8 Polarization: -48.26 SS G_CDS: -1.96 Total: -50.22 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Atomic # 16 Polarization: 36.98 SS G_CDS: -0.69 Total: 36.29 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.76 -8.21 -43.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362583664.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.623 kcal (2) G-P(sol) polarization free energy of solvation -35.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds