Wall clock time and date at job start Tue Mar 31 2020 05:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42896 * 114.00235 * 2 1 4 4 C 1.53004 * 109.47378 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47163 * 64.99130 * 4 3 2 6 6 C 1.36941 * 120.00113 * 274.39595 * 5 4 3 7 7 H 1.08003 * 119.99290 * 145.94252 * 6 5 4 8 8 C 1.38808 * 120.00314 * 325.94391 * 6 5 4 9 9 N 1.31627 * 119.99803 * 337.08695 * 8 6 5 10 10 Si 1.86798 * 120.00206 * 157.08529 * 8 6 5 11 11 H 1.48500 * 109.46889 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46778 * 119.99668 * 10 8 6 13 13 H 1.48497 * 109.47093 * 240.00132 * 10 8 6 14 14 S 1.65600 * 119.99673 * 94.39889 * 5 4 3 15 15 O 1.42097 * 106.40271 * 156.45536 * 14 5 4 16 16 O 1.42110 * 106.40034 * 23.54192 * 14 5 4 17 17 C 1.76192 * 107.21915 * 270.00045 * 14 5 4 18 18 C 1.38259 * 120.00034 * 269.95099 * 17 14 5 19 19 C 1.38209 * 120.00454 * 179.97438 * 18 17 14 20 20 C 1.38256 * 119.99762 * 0.06750 * 19 18 17 21 21 C 1.38221 * 119.99972 * 359.96112 * 20 19 18 22 22 C 1.50699 * 119.99775 * 179.97438 * 21 20 19 23 23 O 1.42903 * 109.46856 * 270.01777 * 22 21 20 24 24 C 1.42898 * 113.99948 * 180.02562 * 23 22 21 25 25 C 1.38213 * 120.00289 * 89.99907 * 17 14 5 26 26 H 1.09000 * 109.47758 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47114 * 300.00184 * 1 2 3 28 28 H 1.09000 * 109.47468 * 60.00109 * 1 2 3 29 29 H 1.08990 * 109.47552 * 59.99719 * 3 2 1 30 30 H 1.09008 * 109.46797 * 299.99827 * 3 2 1 31 31 H 1.09007 * 109.46349 * 304.99831 * 4 3 2 32 32 H 1.08991 * 109.47414 * 184.99693 * 4 3 2 33 33 H 0.97002 * 119.99645 * 180.02562 * 9 8 6 34 34 H 1.08006 * 119.99663 * 0.05068 * 18 17 14 35 35 H 1.07997 * 120.00082 * 180.02562 * 19 18 17 36 36 H 1.08001 * 120.00282 * 179.97438 * 20 19 18 37 37 H 1.08996 * 109.47488 * 30.01662 * 22 21 20 38 38 H 1.09002 * 109.47010 * 150.01761 * 22 21 20 39 39 H 1.09006 * 109.47578 * 300.00171 * 24 23 22 40 40 H 1.09001 * 109.47178 * 59.99864 * 24 23 22 41 41 H 1.09004 * 109.47376 * 179.97438 * 24 23 22 42 42 H 1.07998 * 119.99840 * 0.28221 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5642 -1.2526 6 6 4.0105 -0.8001 -1.3655 7 1 3.7879 -1.2694 -2.3125 8 6 4.3320 -1.5798 -0.2630 9 7 5.0232 -1.0619 0.7302 10 14 3.7837 -3.3640 -0.1889 11 1 3.0272 -3.7009 -1.4216 12 1 4.9753 -4.2440 -0.0839 13 1 2.9133 -3.5655 0.9972 14 16 4.4311 1.5128 -2.5313 15 8 5.2901 0.7164 -3.3358 16 8 4.8197 2.7651 -1.9835 17 6 2.9878 1.8174 -3.4949 18 6 2.6474 0.9561 -4.5214 19 6 1.5150 1.1947 -5.2770 20 6 0.7233 2.2956 -5.0071 21 6 1.0639 3.1570 -3.9813 22 6 0.2013 4.3573 -3.6876 23 8 0.6590 5.4722 -4.4554 24 6 -0.0948 6.6685 -4.2495 25 6 2.1965 2.9180 -3.2252 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8463 -0.8901 31 1 3.8513 0.5681 0.8410 32 1 3.9785 2.1763 0.0889 33 1 5.2482 -1.6069 1.5005 34 1 3.2658 0.0960 -4.7321 35 1 1.2489 0.5217 -6.0785 36 1 -0.1614 2.4824 -5.5978 37 1 -0.8327 4.1348 -3.9509 38 1 0.2623 4.5975 -2.6261 39 1 -1.1353 6.4943 -4.5241 40 1 -0.0396 6.9566 -3.1997 41 1 0.3155 7.4675 -4.8672 42 1 2.4653 3.5938 -2.4268 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414448931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:57 Heat of formation + Delta-G solvation = -118.993575 kcal Electronic energy + Delta-G solvation = -27570.128545 eV Core-core repulsion = 23643.600498 eV Total energy + Delta-G solvation = -3926.528047 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -39.33899 -37.59774 -37.35887 -36.06986 -35.19991 -34.63448 -32.04811 -31.43197 -30.96910 -28.77698 -27.39588 -25.81463 -25.40901 -24.19067 -22.96440 -21.71439 -21.43852 -18.43366 -17.61846 -16.88555 -16.55693 -16.47459 -16.12821 -15.70182 -15.42666 -15.27960 -15.00178 -14.93173 -14.37892 -14.24577 -14.02659 -13.75759 -13.21604 -12.78773 -12.67877 -12.44512 -12.08399 -12.00427 -11.77816 -11.66264 -11.58943 -11.19931 -11.05528 -11.02156 -10.90969 -10.83172 -10.77083 -10.39558 -10.12197 -10.02728 -9.98528 -9.85656 -9.18115 -8.98113 -8.88316 -8.73857 -7.64415 -6.16051 -3.80796 1.06847 1.41007 1.56403 3.31495 3.38144 3.41415 3.44703 3.99415 4.24578 4.53535 4.54929 4.72296 4.76929 4.85187 5.07458 5.08983 5.10073 5.17790 5.19323 5.26757 5.40920 5.45142 5.49240 5.64839 5.70435 5.77959 5.92518 5.93843 5.95920 6.03973 6.14487 6.25441 6.40847 6.43458 6.46711 6.50811 6.93931 7.03881 7.16818 7.42890 7.74683 8.02642 8.50649 9.11300 9.47823 10.87092 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014910 B = 0.004776 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.456871 B = 5860.847491 C = 6250.151934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.049 3.951 4 C 0.114 3.886 5 N -0.834 5.834 6 C -0.260 4.260 7 H 0.089 0.911 8 C 0.047 3.953 9 N -0.860 5.860 10 Si 0.920 3.080 11 H -0.270 1.270 12 H -0.287 1.287 13 H -0.281 1.281 14 S 2.621 3.379 15 O -0.971 6.971 16 O -1.000 7.000 17 C -0.650 4.650 18 C -0.009 4.009 19 C -0.146 4.146 20 C -0.059 4.059 21 C -0.123 4.123 22 C 0.106 3.894 23 O -0.385 6.385 24 C 0.030 3.970 25 C -0.005 4.005 26 H 0.076 0.924 27 H 0.028 0.972 28 H 0.029 0.971 29 H 0.039 0.961 30 H 0.031 0.969 31 H 0.127 0.873 32 H 0.076 0.924 33 H 0.265 0.735 34 H 0.141 0.859 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.040 0.960 40 H 0.042 0.958 41 H 0.086 0.914 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.328 7.839 -5.036 16.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.268 6.268 3 C -0.030 4.030 4 C -0.013 4.013 5 N -0.665 5.665 6 C -0.396 4.396 7 H 0.106 0.894 8 C -0.159 4.159 9 N -0.501 5.501 10 Si 0.747 3.253 11 H -0.194 1.194 12 H -0.213 1.213 13 H -0.207 1.207 14 S 2.719 3.281 15 O -0.960 6.960 16 O -0.989 6.989 17 C -0.733 4.733 18 C -0.028 4.028 19 C -0.165 4.165 20 C -0.077 4.077 21 C -0.123 4.123 22 C 0.030 3.970 23 O -0.304 6.304 24 C -0.067 4.067 25 C -0.024 4.024 26 H 0.095 0.905 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.144 0.856 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.158 0.842 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.104 0.896 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.152 8.066 -5.311 15.522 hybrid contribution -1.625 -0.500 0.032 1.701 sum -13.778 7.565 -5.279 16.581 Atomic orbital electron populations 1.22654 0.84019 1.01692 0.98541 1.88229 1.16690 1.27024 1.94858 1.23204 0.97079 0.84802 0.97958 1.21515 0.89049 0.98796 0.91968 1.52520 1.76947 1.13756 1.23243 1.18992 1.43003 0.78849 0.98802 0.89378 1.25190 0.94729 0.99067 0.96956 1.69931 1.33917 1.37073 1.09208 0.86004 0.78236 0.82618 0.78440 1.19416 1.21334 1.20721 1.05457 0.73920 0.73442 0.75280 1.93432 1.62224 1.69344 1.71034 1.93404 1.81042 1.46443 1.78034 1.31557 1.24339 1.03726 1.13661 1.21019 0.94612 0.96314 0.90824 1.21223 0.95914 0.98376 1.00975 1.21168 0.98409 0.93435 0.94675 1.19582 0.97570 0.96556 0.98633 1.21322 0.95849 0.84552 0.95315 1.88002 1.56832 1.18992 1.66596 1.22759 0.95551 0.87349 1.00992 1.20750 0.91070 0.93799 0.96764 0.90540 0.95360 0.95201 0.94271 0.95094 0.85560 0.90576 0.92449 0.84165 0.85334 0.85880 0.92435 0.92188 0.94174 0.93911 0.89576 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.55 16 2 O -0.35 -7.08 9.97 -35.23 -0.35 -7.43 16 3 C 0.05 0.92 6.28 37.16 0.23 1.15 16 4 C 0.11 2.55 5.74 -4.04 -0.02 2.52 16 5 N -0.83 -20.21 2.84 -59.91 -0.17 -20.38 16 6 C -0.26 -6.71 8.18 -15.06 -0.12 -6.84 16 7 H 0.09 2.24 7.93 -52.48 -0.42 1.82 16 8 C 0.05 1.23 4.99 -17.43 -0.09 1.14 16 9 N -0.86 -23.01 11.27 55.49 0.63 -22.38 16 10 Si 0.92 20.67 29.61 -169.99 -5.03 15.63 16 11 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 12 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 S 2.62 61.20 5.65 -107.50 -0.61 60.59 16 15 O -0.97 -25.23 16.50 -57.17 -0.94 -26.18 16 16 O -1.00 -24.39 15.84 -57.17 -0.91 -25.29 16 17 C -0.65 -12.69 5.97 -39.58 -0.24 -12.92 16 18 C -0.01 -0.15 9.52 -39.58 -0.38 -0.53 16 19 C -0.15 -2.11 10.05 -39.59 -0.40 -2.51 16 20 C -0.06 -0.80 9.70 -39.58 -0.38 -1.18 16 21 C -0.12 -1.82 5.51 -104.62 -0.58 -2.40 16 22 C 0.11 1.27 6.06 36.00 0.22 1.49 16 23 O -0.39 -5.03 10.69 -35.23 -0.38 -5.40 16 24 C 0.03 0.26 11.01 101.05 1.11 1.38 16 25 C 0.00 -0.08 7.97 -39.59 -0.32 -0.40 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.03 0.55 6.88 -51.92 -0.36 0.19 16 31 H 0.13 3.10 5.31 -51.93 -0.28 2.83 16 32 H 0.08 1.61 6.92 -51.93 -0.36 1.25 16 33 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 34 H 0.14 2.45 7.62 -52.48 -0.40 2.05 16 35 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 38 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 39 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.13 2.26 7.61 -52.49 -0.40 1.86 16 LS Contribution 365.54 15.07 5.51 5.51 Total: -1.00 -32.80 365.54 -8.09 -40.89 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.99 Total: 1.99 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 0.16 Total: -17.55 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.46 Total: -42.76 kcal Atomic # 8 Polarization: -61.73 SS G_CDS: -2.58 Total: -64.30 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.63 kcal Atomic # 16 Polarization: 61.20 SS G_CDS: -0.61 Total: 60.59 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.80 -8.09 -40.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414448931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.109 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds