Wall clock time and date at job start Tue Mar 31 2020 05:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99842 * 2 1 4 4 C 1.53003 * 109.47020 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46948 * 64.99827 * 4 3 2 6 6 C 1.36936 * 119.99900 * 274.99724 * 5 4 3 7 7 H 1.08008 * 119.99873 * 146.19991 * 6 5 4 8 8 C 1.38810 * 120.00367 * 326.20588 * 6 5 4 9 9 N 1.31626 * 119.99803 * 336.35042 * 8 6 5 10 10 Si 1.86800 * 120.00218 * 156.35711 * 8 6 5 11 11 H 1.48498 * 109.47299 * 59.99966 * 10 8 6 12 12 H 1.48501 * 109.47015 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46898 * 299.99616 * 10 8 6 14 14 S 1.65598 * 119.99963 * 95.00120 * 5 4 3 15 15 O 1.42098 * 106.39983 * 341.68602 * 14 5 4 16 16 O 1.42101 * 106.40303 * 208.76434 * 14 5 4 17 17 C 1.76202 * 107.21657 * 95.22361 * 14 5 4 18 18 C 1.38243 * 119.99831 * 90.00279 * 17 14 5 19 19 C 1.38230 * 120.00094 * 179.97438 * 18 17 14 20 20 C 1.38241 * 119.99874 * 0.02568 * 19 18 17 21 21 C 1.50696 * 119.99919 * 179.97438 * 20 19 18 22 22 O 1.42894 * 109.47458 * 89.99465 * 21 20 19 23 23 C 1.42900 * 114.00157 * 180.02562 * 22 21 20 24 24 C 1.38230 * 120.00028 * 0.24760 * 20 19 18 25 25 C 1.38232 * 120.00476 * 270.01951 * 17 14 5 26 26 H 1.09000 * 109.46825 * 60.00417 * 1 2 3 27 27 H 1.09000 * 109.47415 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47431 * 300.00533 * 1 2 3 29 29 H 1.08998 * 109.47249 * 59.99640 * 3 2 1 30 30 H 1.08996 * 109.46911 * 299.99439 * 3 2 1 31 31 H 1.09006 * 109.46905 * 304.99903 * 4 3 2 32 32 H 1.08998 * 109.47052 * 184.99776 * 4 3 2 33 33 H 0.96998 * 119.99524 * 180.02562 * 9 8 6 34 34 H 1.08002 * 119.99632 * 359.97438 * 18 17 14 35 35 H 1.07997 * 120.00117 * 179.97438 * 19 18 17 36 36 H 1.09001 * 109.47305 * 329.99461 * 21 20 19 37 37 H 1.08999 * 109.46851 * 210.00226 * 21 20 19 38 38 H 1.09003 * 109.47125 * 300.00320 * 23 22 21 39 39 H 1.09000 * 109.47145 * 60.00296 * 23 22 21 40 40 H 1.08998 * 109.47203 * 180.02562 * 23 22 21 41 41 H 1.07998 * 120.00075 * 179.73271 * 24 20 19 42 42 H 1.08002 * 119.99367 * 0.02562 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 3.9999 -0.8002 -1.3675 7 1 3.7820 -1.2647 -2.3180 8 6 4.3032 -1.5861 -0.2643 9 7 5.0019 -1.0820 0.7308 10 14 3.7201 -3.3593 -0.1919 11 1 4.2882 -4.1144 -1.3374 12 1 4.1717 -3.9773 1.0806 13 1 2.2371 -3.3959 -0.2615 14 16 4.4473 1.5121 -2.5244 15 8 3.9207 2.8082 -2.2758 16 8 4.1636 0.7707 -3.7030 17 6 6.2009 1.6633 -2.4418 18 6 7.0051 0.7467 -3.0930 19 6 8.3808 0.8656 -3.0287 20 6 8.9524 1.9008 -2.3127 21 6 10.4521 2.0302 -2.2422 22 8 10.9117 2.8426 -3.3241 23 6 12.3282 3.0290 -3.3501 24 6 8.1483 2.8141 -1.6569 25 6 6.7725 2.6983 -1.7256 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6885 1.8464 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 3.8507 0.5685 0.8428 32 1 3.9784 2.1766 0.0902 33 1 5.2141 -1.6313 1.5015 34 1 6.5585 -0.0623 -3.6521 35 1 9.0091 0.1493 -3.5371 36 1 10.9058 1.0415 -2.3121 37 1 10.7327 2.4925 -1.2958 38 1 12.6482 3.5119 -2.4268 39 1 12.8204 2.0609 -3.4434 40 1 12.5966 3.6567 -4.1999 41 1 8.5948 3.6204 -1.0940 42 1 6.1441 3.4140 -1.2163 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414451505.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:03 Heat of formation + Delta-G solvation = -125.428880 kcal Electronic energy + Delta-G solvation = -26898.813896 eV Core-core repulsion = 22972.006794 eV Total energy + Delta-G solvation = -3926.807103 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -38.99735 -37.40384 -37.38674 -35.75194 -35.38428 -34.33938 -31.77134 -31.74769 -30.45376 -28.85206 -27.28728 -25.83900 -25.31870 -24.35990 -22.27280 -21.62201 -21.24865 -18.45584 -17.55927 -16.75358 -16.48805 -16.35217 -15.95945 -15.68817 -15.39329 -15.25402 -14.73084 -14.55095 -14.27496 -14.14108 -13.87717 -13.41320 -13.20643 -12.95689 -12.39087 -12.29355 -12.12563 -12.02244 -11.75795 -11.59312 -11.32517 -11.18814 -11.05068 -10.87598 -10.75942 -10.65119 -10.56298 -10.54220 -10.20760 -10.06142 -9.78351 -9.64562 -9.20618 -8.92328 -8.60374 -8.42297 -7.84616 -6.56301 -4.04941 1.37541 1.88099 1.91386 3.17696 3.20554 3.31434 3.66286 4.04560 4.27387 4.51406 4.59002 4.83136 4.94355 4.99117 5.12676 5.19714 5.23757 5.31057 5.38625 5.47779 5.49935 5.69848 5.77289 5.80560 5.90398 5.96873 6.06153 6.12002 6.17917 6.20237 6.31270 6.36810 6.54282 6.69070 6.88436 6.91937 7.05058 7.07729 7.18353 7.45714 7.47579 7.97935 8.29037 8.72223 9.17599 10.38793 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.016305 B = 0.004063 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.849669 B = 6889.832578 C = 7721.123774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.054 3.946 4 C 0.123 3.877 5 N -0.791 5.791 6 C -0.215 4.215 7 H 0.109 0.891 8 C 0.047 3.953 9 N -0.821 5.821 10 Si 0.927 3.073 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.264 1.264 14 S 2.512 3.488 15 O -1.011 7.011 16 O -0.986 6.986 17 C -0.636 4.636 18 C -0.025 4.025 19 C -0.124 4.124 20 C -0.070 4.070 21 C 0.103 3.897 22 O -0.385 6.385 23 C 0.030 3.970 24 C -0.126 4.126 25 C -0.036 4.036 26 H 0.033 0.967 27 H 0.077 0.923 28 H 0.029 0.971 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.117 0.883 32 H 0.071 0.929 33 H 0.276 0.724 34 H 0.134 0.866 35 H 0.120 0.880 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.085 0.915 41 H 0.119 0.881 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.714 2.622 1.383 6.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.276 6.276 3 C -0.025 4.025 4 C -0.004 4.004 5 N -0.613 5.613 6 C -0.366 4.366 7 H 0.126 0.874 8 C -0.167 4.167 9 N -0.460 5.460 10 Si 0.752 3.248 11 H -0.195 1.195 12 H -0.209 1.209 13 H -0.189 1.189 14 S 2.615 3.385 15 O -1.000 7.000 16 O -0.976 6.976 17 C -0.714 4.714 18 C -0.044 4.044 19 C -0.143 4.143 20 C -0.071 4.071 21 C 0.027 3.973 22 O -0.304 6.304 23 C -0.066 4.066 24 C -0.145 4.145 25 C -0.055 4.055 26 H 0.052 0.948 27 H 0.095 0.905 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.134 0.866 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.152 0.848 35 H 0.138 0.862 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.103 0.897 41 H 0.137 0.863 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.375 3.194 0.625 6.283 hybrid contribution 0.745 -0.618 0.582 1.130 sum 6.120 2.576 1.207 6.749 Atomic orbital electron populations 1.22662 0.83548 1.01772 0.98850 1.88159 1.17183 1.27274 1.95011 1.23016 0.95940 0.84649 0.98909 1.21435 0.90269 0.98029 0.90699 1.53796 1.64526 1.14093 1.28863 1.19718 1.38245 0.79597 0.99012 0.87388 1.25689 0.93941 1.00568 0.96536 1.69938 1.29934 1.37991 1.08137 0.85982 0.80277 0.80817 0.77714 1.19532 1.20916 1.18877 1.12378 0.74700 0.73755 0.77678 1.93301 1.78699 1.42059 1.85975 1.93337 1.83875 1.71607 1.48790 1.32392 1.32160 1.01337 1.05525 1.20852 0.92886 0.96264 0.94392 1.21063 0.95380 0.98314 0.99554 1.19570 0.93346 0.95990 0.98151 1.21394 0.91492 0.94593 0.89798 1.87999 1.21722 1.71168 1.49499 1.22743 0.81708 1.00439 1.01728 1.21008 0.93952 0.98739 1.00761 1.20783 0.94571 0.95382 0.94772 0.94844 0.90455 0.95241 0.93883 0.93898 0.86567 0.91078 0.91418 0.84835 0.86237 0.92410 0.92458 0.94150 0.94117 0.89689 0.86328 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.36 -7.32 9.94 -35.23 -0.35 -7.67 16 3 C 0.05 1.06 6.28 37.16 0.23 1.29 16 4 C 0.12 2.65 5.43 -4.04 -0.02 2.63 16 5 N -0.79 -18.78 2.84 -59.90 -0.17 -18.95 16 6 C -0.22 -5.27 8.44 -15.06 -0.13 -5.40 16 7 H 0.11 2.69 7.46 -52.48 -0.39 2.30 16 8 C 0.05 1.10 4.98 -17.43 -0.09 1.01 16 9 N -0.82 -19.52 11.29 55.49 0.63 -18.89 16 10 Si 0.93 18.85 29.61 -169.99 -5.03 13.81 16 11 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 12 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 13 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 14 S 2.51 60.47 5.61 -107.50 -0.60 59.86 16 15 O -1.01 -25.10 16.08 -57.17 -0.92 -26.02 16 16 O -0.99 -25.95 16.28 -57.17 -0.93 -26.88 16 17 C -0.64 -14.11 5.97 -39.58 -0.24 -14.35 16 18 C -0.02 -0.52 9.52 -39.58 -0.38 -0.90 16 19 C -0.12 -2.26 9.70 -39.58 -0.38 -2.65 16 20 C -0.07 -1.21 5.51 -104.63 -0.58 -1.79 16 21 C 0.10 1.41 6.06 36.00 0.22 1.63 16 22 O -0.38 -5.46 10.69 -35.23 -0.38 -5.84 16 23 C 0.03 0.29 11.01 101.05 1.11 1.40 16 24 C -0.13 -2.24 9.70 -39.58 -0.38 -2.62 16 25 C -0.04 -0.73 9.52 -39.58 -0.38 -1.10 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.12 2.64 5.32 -51.93 -0.28 2.36 16 32 H 0.07 1.43 7.46 -51.93 -0.39 1.04 16 33 H 0.28 6.17 8.31 -40.82 -0.34 5.83 16 34 H 0.13 2.74 7.62 -52.49 -0.40 2.34 16 35 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.06 0.69 8.09 -51.93 -0.42 0.28 16 37 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 38 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 42 H 0.13 2.44 7.62 -52.49 -0.40 2.04 16 LS Contribution 368.02 15.07 5.55 5.55 Total: -1.00 -30.71 368.02 -8.16 -38.87 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.06 Total: 5.43 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 0.11 Total: -19.26 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.46 Total: -37.84 kcal Atomic # 8 Polarization: -63.84 SS G_CDS: -2.58 Total: -66.41 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.81 kcal Atomic # 16 Polarization: 60.47 SS G_CDS: -0.60 Total: 59.86 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.71 -8.16 -38.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414451505.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.561 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds