Wall clock time and date at job start Tue Mar 31 2020 05:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99384 * 2 1 4 4 C 1.53004 * 109.46914 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47107 * 64.99993 * 4 3 2 6 6 C 1.36936 * 120.00339 * 284.80906 * 5 4 3 7 7 H 1.08005 * 119.99596 * 32.54407 * 6 5 4 8 8 C 1.38810 * 120.00608 * 212.54326 * 6 5 4 9 9 N 1.31617 * 119.99837 * 31.67435 * 8 6 5 10 10 Si 1.86794 * 120.00258 * 211.67258 * 8 6 5 11 11 H 1.48508 * 109.47097 * 90.00074 * 10 8 6 12 12 H 1.48493 * 109.47519 * 209.99817 * 10 8 6 13 13 H 1.48499 * 109.47452 * 330.00231 * 10 8 6 14 14 S 1.65598 * 120.00232 * 105.08714 * 5 4 3 15 15 O 1.42100 * 106.40623 * 195.44510 * 14 5 4 16 16 O 1.42100 * 106.39923 * 328.36400 * 14 5 4 17 17 C 1.76198 * 107.21813 * 81.90198 * 14 5 4 18 18 C 1.38259 * 120.00004 * 13.95713 * 17 14 5 19 19 C 1.38215 * 119.99627 * 179.74432 * 18 17 14 20 20 C 1.38256 * 120.00367 * 0.54706 * 19 18 17 21 21 C 1.38222 * 119.99530 * 359.70452 * 20 19 18 22 22 C 1.38215 * 120.00109 * 194.22742 * 17 14 5 23 23 C 1.50706 * 119.99789 * 0.02562 * 22 17 14 24 24 O 1.42897 * 109.47080 * 184.62830 * 23 22 17 25 25 C 1.42901 * 114.00333 * 179.97438 * 24 23 22 26 26 H 1.09005 * 109.46988 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47694 * 300.00173 * 1 2 3 28 28 H 1.09006 * 109.47211 * 60.00231 * 1 2 3 29 29 H 1.09004 * 109.47262 * 60.00244 * 3 2 1 30 30 H 1.08992 * 109.47806 * 299.99436 * 3 2 1 31 31 H 1.09007 * 109.46836 * 304.99725 * 4 3 2 32 32 H 1.08996 * 109.47320 * 185.00313 * 4 3 2 33 33 H 0.97002 * 120.00385 * 180.02562 * 9 8 6 34 34 H 1.07994 * 119.99905 * 359.97438 * 18 17 14 35 35 H 1.08005 * 120.00102 * 180.27369 * 19 18 17 36 36 H 1.07994 * 119.99899 * 179.72597 * 20 19 18 37 37 H 1.08003 * 119.99179 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.46823 * 304.62262 * 23 22 17 39 39 H 1.08998 * 109.47090 * 64.62229 * 23 22 17 40 40 H 1.09001 * 109.46733 * 299.99984 * 25 24 23 41 41 H 1.09008 * 109.46850 * 59.99486 * 25 24 23 42 42 H 1.08999 * 109.47447 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5642 -1.2508 6 6 3.8125 -0.7817 -1.4428 7 1 2.9656 -1.2901 -1.0060 8 6 4.7345 -1.4926 -2.1987 9 7 5.9982 -1.1250 -2.2115 10 14 4.1817 -2.9709 -3.1978 11 1 3.7812 -2.5278 -4.5575 12 1 5.2992 -3.9431 -3.3032 13 1 3.0250 -3.6172 -2.5272 14 16 4.6802 1.4890 -2.4307 15 8 4.6589 0.7088 -3.6182 16 8 4.0886 2.7775 -2.3366 17 6 6.3762 1.6872 -1.9959 18 6 6.9372 0.8871 -1.0179 19 6 8.2689 1.0391 -0.6806 20 6 9.0371 1.9988 -1.3133 21 6 8.4748 2.8022 -2.2875 22 6 7.1443 2.6463 -2.6288 23 6 6.5310 3.5230 -3.6902 24 8 7.5422 4.3526 -4.2656 25 6 7.0636 5.2271 -5.2894 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8507 0.5687 0.8428 32 1 3.9783 2.1767 0.0903 33 1 6.6425 -1.6215 -2.7400 34 1 6.3358 0.1409 -0.5201 35 1 8.7084 0.4111 0.0803 36 1 10.0765 2.1205 -1.0467 37 1 9.0749 3.5521 -2.7814 38 1 6.0885 2.8984 -4.4662 39 1 5.7586 4.1487 -3.2430 40 1 6.6324 4.6375 -6.0985 41 1 6.3020 5.8882 -4.8758 42 1 7.8912 5.8229 -5.6746 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414464249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:09 Heat of formation + Delta-G solvation = -110.835372 kcal Electronic energy + Delta-G solvation = -28045.672673 eV Core-core repulsion = 24119.498393 eV Total energy + Delta-G solvation = -3926.174281 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 6.98 seconds Orbital eigenvalues (eV) -38.86069 -37.53118 -37.22404 -36.02092 -35.21351 -34.54225 -31.85647 -31.60860 -30.30392 -28.64084 -27.01500 -25.93026 -25.18871 -24.15062 -22.35105 -21.63419 -20.86631 -18.93893 -17.56119 -16.62946 -16.26985 -16.06733 -15.73868 -15.71809 -15.49789 -14.89012 -14.70528 -14.39017 -14.19343 -14.15212 -13.85939 -13.43047 -13.33599 -12.90303 -12.30496 -12.23655 -11.89463 -11.80240 -11.69924 -11.56955 -11.45412 -11.16370 -11.05514 -10.83925 -10.77252 -10.73480 -10.50836 -10.43388 -10.19749 -9.92088 -9.66495 -9.56349 -9.09003 -8.85601 -8.44105 -8.06034 -7.76151 -6.25744 -3.81893 1.64101 1.79221 2.15292 3.38407 3.47447 3.52942 3.84427 4.14769 4.30510 4.37338 4.54886 4.83219 5.10037 5.15649 5.39946 5.41817 5.48249 5.57073 5.62747 5.64767 5.68592 5.70860 5.76229 5.79092 5.88314 5.90447 5.94199 5.99234 6.07168 6.16808 6.38259 6.48860 6.61338 6.74244 6.85397 7.06852 7.16254 7.21357 7.32345 7.68742 7.77013 7.82476 8.60509 9.09588 9.51574 10.73646 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.012515 B = 0.005703 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.821401 B = 4908.882679 C = 5528.952627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.364 6.364 3 C 0.050 3.950 4 C 0.129 3.871 5 N -0.855 5.855 6 C -0.306 4.306 7 H 0.107 0.893 8 C 0.047 3.953 9 N -0.877 5.877 10 Si 0.924 3.076 11 H -0.275 1.275 12 H -0.291 1.291 13 H -0.274 1.274 14 S 2.681 3.319 15 O -0.952 6.952 16 O -1.014 7.014 17 C -0.637 4.637 18 C 0.058 3.942 19 C -0.166 4.166 20 C -0.083 4.083 21 C -0.144 4.144 22 C -0.007 4.007 23 C 0.070 3.930 24 O -0.383 6.383 25 C 0.028 3.972 26 H 0.079 0.921 27 H 0.030 0.970 28 H 0.034 0.966 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.275 0.725 34 H 0.164 0.836 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.125 0.875 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.043 0.957 41 H 0.044 0.956 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.108 7.121 3.005 7.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.282 6.282 3 C -0.028 4.028 4 C 0.001 3.999 5 N -0.687 5.687 6 C -0.437 4.437 7 H 0.124 0.876 8 C -0.158 4.158 9 N -0.518 5.518 10 Si 0.751 3.249 11 H -0.201 1.201 12 H -0.217 1.217 13 H -0.199 1.199 14 S 2.775 3.225 15 O -0.942 6.942 16 O -1.005 7.005 17 C -0.723 4.723 18 C 0.039 3.961 19 C -0.185 4.185 20 C -0.101 4.101 21 C -0.163 4.163 22 C -0.009 4.009 23 C -0.006 4.006 24 O -0.301 6.301 25 C -0.068 4.068 26 H 0.097 0.903 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.182 0.818 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.143 0.857 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.036 7.264 2.234 7.600 hybrid contribution 0.220 -0.544 -0.432 0.728 sum 0.184 6.721 1.802 6.961 Atomic orbital electron populations 1.22674 0.83132 1.01993 0.98982 1.88109 1.17702 1.27351 1.95065 1.23066 0.95736 0.84826 0.99210 1.21126 0.91854 0.97264 0.89650 1.52686 1.74262 1.16784 1.24926 1.19106 1.08409 0.81342 1.34798 0.87598 1.25207 0.93619 0.98864 0.98075 1.69760 1.00854 1.42806 1.38358 0.85989 0.77943 0.79732 0.81200 1.20110 1.21711 1.19918 1.02605 0.73694 0.71908 0.74308 1.93467 1.86118 1.69267 1.45303 1.93435 1.76339 1.43035 1.87643 1.30640 1.26991 1.05351 1.09294 1.21237 0.94764 0.89795 0.90312 1.21233 0.95394 0.99760 1.02122 1.21210 0.98825 0.94935 0.95122 1.20740 0.94625 1.01426 0.99484 1.19072 0.94649 0.93075 0.94064 1.21784 0.90949 0.93207 0.94691 1.87809 1.34415 1.53955 1.53957 1.22780 1.00287 0.93295 0.90482 0.90252 0.95116 0.94693 0.93905 0.93390 0.90562 0.90855 0.91430 0.81843 0.86505 0.86797 0.85662 0.91745 0.89399 0.93856 0.93776 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.36 -6.85 8.59 -35.23 -0.30 -7.15 16 3 C 0.05 0.90 6.27 37.16 0.23 1.13 16 4 C 0.13 2.48 5.96 -4.04 -0.02 2.46 16 5 N -0.85 -19.97 1.92 -59.91 -0.12 -20.08 16 6 C -0.31 -7.72 8.67 -15.06 -0.13 -7.85 16 7 H 0.11 2.69 6.36 -52.48 -0.33 2.35 16 8 C 0.05 1.22 3.61 -17.43 -0.06 1.16 16 9 N -0.88 -22.73 7.59 55.49 0.42 -22.31 16 10 Si 0.92 21.89 29.65 -169.99 -5.04 16.84 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 14 S 2.68 65.34 3.89 -107.50 -0.42 64.92 16 15 O -0.95 -26.42 15.07 -57.17 -0.86 -27.29 16 16 O -1.01 -24.20 15.34 -57.17 -0.88 -25.07 16 17 C -0.64 -14.44 5.32 -39.58 -0.21 -14.66 16 18 C 0.06 1.25 7.30 -39.58 -0.29 0.96 16 19 C -0.17 -3.08 10.05 -39.58 -0.40 -3.48 16 20 C -0.08 -1.43 10.05 -39.58 -0.40 -1.83 16 21 C -0.14 -2.71 9.38 -39.58 -0.37 -3.08 16 22 C -0.01 -0.15 5.87 -104.62 -0.61 -0.76 16 23 C 0.07 1.38 4.97 36.01 0.18 1.55 16 24 O -0.38 -6.58 9.20 -35.23 -0.32 -6.91 16 25 C 0.03 0.36 11.01 101.05 1.11 1.47 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.38 8.14 -51.92 -0.42 0.96 16 32 H 0.07 1.28 7.51 -51.93 -0.39 0.89 16 33 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.16 3.68 5.83 -52.49 -0.31 3.38 16 35 H 0.12 1.86 8.06 -52.48 -0.42 1.44 16 36 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.13 2.14 7.02 -52.48 -0.37 1.77 16 38 H 0.06 1.31 7.93 -51.93 -0.41 0.90 16 39 H 0.09 1.70 6.97 -51.93 -0.36 1.34 16 40 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.04 0.52 8.14 -51.92 -0.42 0.09 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 351.35 15.07 5.29 5.29 Total: -1.00 -30.87 351.35 -8.04 -38.91 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.96 Total: 4.22 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 0.14 Total: -21.39 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.31 Total: -42.39 kcal Atomic # 8 Polarization: -64.05 SS G_CDS: -2.36 Total: -66.42 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.04 Total: 16.84 kcal Atomic # 16 Polarization: 65.34 SS G_CDS: -0.42 Total: 64.92 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.87 -8.04 -38.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414464249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.923 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.99 seconds