Wall clock time and date at job start Tue Mar 31 2020 05:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99384 * 2 1 4 4 C 1.53004 * 109.46914 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47107 * 64.99993 * 4 3 2 6 6 C 1.36936 * 120.00339 * 284.80906 * 5 4 3 7 7 H 1.08005 * 119.99596 * 32.54407 * 6 5 4 8 8 C 1.38810 * 120.00608 * 212.54326 * 6 5 4 9 9 N 1.31617 * 119.99837 * 31.67435 * 8 6 5 10 10 Si 1.86794 * 120.00258 * 211.67258 * 8 6 5 11 11 H 1.48508 * 109.47097 * 90.00074 * 10 8 6 12 12 H 1.48493 * 109.47519 * 209.99817 * 10 8 6 13 13 H 1.48499 * 109.47452 * 330.00231 * 10 8 6 14 14 S 1.65598 * 120.00232 * 105.08714 * 5 4 3 15 15 O 1.42100 * 106.40623 * 195.44510 * 14 5 4 16 16 O 1.42100 * 106.39923 * 328.36400 * 14 5 4 17 17 C 1.76198 * 107.21813 * 81.90198 * 14 5 4 18 18 C 1.38259 * 120.00004 * 13.95713 * 17 14 5 19 19 C 1.38215 * 119.99627 * 179.74432 * 18 17 14 20 20 C 1.38256 * 120.00367 * 0.54706 * 19 18 17 21 21 C 1.38222 * 119.99530 * 359.70452 * 20 19 18 22 22 C 1.38215 * 120.00109 * 194.22742 * 17 14 5 23 23 C 1.50706 * 119.99789 * 0.02562 * 22 17 14 24 24 O 1.42897 * 109.47080 * 184.62830 * 23 22 17 25 25 C 1.42901 * 114.00333 * 179.97438 * 24 23 22 26 26 H 1.09005 * 109.46988 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47694 * 300.00173 * 1 2 3 28 28 H 1.09006 * 109.47211 * 60.00231 * 1 2 3 29 29 H 1.09004 * 109.47262 * 60.00244 * 3 2 1 30 30 H 1.08992 * 109.47806 * 299.99436 * 3 2 1 31 31 H 1.09007 * 109.46836 * 304.99725 * 4 3 2 32 32 H 1.08996 * 109.47320 * 185.00313 * 4 3 2 33 33 H 0.97002 * 120.00385 * 180.02562 * 9 8 6 34 34 H 1.07994 * 119.99905 * 359.97438 * 18 17 14 35 35 H 1.08005 * 120.00102 * 180.27369 * 19 18 17 36 36 H 1.07994 * 119.99899 * 179.72597 * 20 19 18 37 37 H 1.08003 * 119.99179 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.46823 * 304.62262 * 23 22 17 39 39 H 1.08998 * 109.47090 * 64.62229 * 23 22 17 40 40 H 1.09001 * 109.46733 * 299.99984 * 25 24 23 41 41 H 1.09008 * 109.46850 * 59.99486 * 25 24 23 42 42 H 1.08999 * 109.47447 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5642 -1.2508 6 6 3.8125 -0.7817 -1.4428 7 1 2.9656 -1.2901 -1.0060 8 6 4.7345 -1.4926 -2.1987 9 7 5.9982 -1.1250 -2.2115 10 14 4.1817 -2.9709 -3.1978 11 1 3.7812 -2.5278 -4.5575 12 1 5.2992 -3.9431 -3.3032 13 1 3.0250 -3.6172 -2.5272 14 16 4.6802 1.4890 -2.4307 15 8 4.6589 0.7088 -3.6182 16 8 4.0886 2.7775 -2.3366 17 6 6.3762 1.6872 -1.9959 18 6 6.9372 0.8871 -1.0179 19 6 8.2689 1.0391 -0.6806 20 6 9.0371 1.9988 -1.3133 21 6 8.4748 2.8022 -2.2875 22 6 7.1443 2.6463 -2.6288 23 6 6.5310 3.5230 -3.6902 24 8 7.5422 4.3526 -4.2656 25 6 7.0636 5.2271 -5.2894 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8507 0.5687 0.8428 32 1 3.9783 2.1767 0.0903 33 1 6.6425 -1.6215 -2.7400 34 1 6.3358 0.1409 -0.5201 35 1 8.7084 0.4111 0.0803 36 1 10.0765 2.1205 -1.0467 37 1 9.0749 3.5521 -2.7814 38 1 6.0885 2.8984 -4.4662 39 1 5.7586 4.1487 -3.2430 40 1 6.6324 4.6375 -6.0985 41 1 6.3020 5.8882 -4.8758 42 1 7.8912 5.8229 -5.6746 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414464249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:07 Heat of formation + Delta-G solvation = -131.584455 kcal Electronic energy + Delta-G solvation = -28046.572421 eV Core-core repulsion = 24119.498393 eV Total energy + Delta-G solvation = -3927.074028 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -40.33296 -38.95740 -38.57821 -37.92356 -36.90067 -36.48972 -33.68764 -33.07087 -31.84051 -30.21032 -28.26023 -27.26145 -26.54303 -25.87357 -23.89053 -23.17415 -22.39256 -20.78001 -19.28247 -18.35483 -17.81969 -17.49971 -17.20720 -17.06796 -16.95542 -16.49457 -16.33512 -16.17075 -15.72876 -15.52102 -15.36578 -15.07971 -14.94187 -14.29164 -13.78370 -13.69158 -13.51947 -13.44422 -13.18004 -13.06581 -12.92986 -12.85078 -12.77984 -12.57624 -12.48611 -12.39312 -12.05357 -12.01528 -11.91949 -11.74884 -11.24323 -10.96330 -10.73087 -10.38896 -10.00143 -9.66533 -9.54475 -8.18274 -5.76660 -0.04626 0.11849 0.62735 1.45807 1.58284 1.59510 2.33942 2.53833 2.62222 2.81154 2.96984 3.08949 3.27237 3.65434 3.95800 4.11824 4.16852 4.19832 4.26042 4.33080 4.39612 4.45786 4.47176 4.49756 4.57952 4.61023 4.64982 4.70622 4.74433 4.86955 4.92534 4.98882 5.13458 5.27234 5.42561 5.48201 5.59292 5.65542 5.81897 5.97970 6.19055 6.47958 6.63633 7.19261 7.57170 8.75778 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.012515 B = 0.005703 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.821401 B = 4908.882679 C = 5528.952627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.396 6.396 3 C 0.051 3.949 4 C 0.120 3.880 5 N -0.861 5.861 6 C -0.305 4.305 7 H 0.103 0.897 8 C 0.010 3.990 9 N -0.880 5.880 10 Si 0.954 3.046 11 H -0.300 1.300 12 H -0.282 1.282 13 H -0.258 1.258 14 S 2.677 3.323 15 O -0.998 6.998 16 O -1.023 7.023 17 C -0.655 4.655 18 C 0.044 3.956 19 C -0.166 4.166 20 C -0.068 4.068 21 C -0.144 4.144 22 C -0.031 4.031 23 C 0.075 3.925 24 O -0.389 6.389 25 C 0.016 3.984 26 H 0.090 0.910 27 H 0.057 0.943 28 H 0.034 0.966 29 H 0.082 0.918 30 H 0.032 0.968 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.268 0.732 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.160 0.840 37 H 0.145 0.855 38 H 0.045 0.955 39 H 0.084 0.916 40 H 0.044 0.956 41 H 0.054 0.946 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.173 7.921 4.312 9.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C -0.028 4.028 4 C -0.007 4.007 5 N -0.693 5.693 6 C -0.436 4.436 7 H 0.120 0.880 8 C -0.193 4.193 9 N -0.521 5.521 10 Si 0.781 3.219 11 H -0.227 1.227 12 H -0.208 1.208 13 H -0.182 1.182 14 S 2.775 3.225 15 O -0.988 6.988 16 O -1.013 7.013 17 C -0.743 4.743 18 C 0.024 3.976 19 C -0.185 4.185 20 C -0.086 4.086 21 C -0.163 4.163 22 C -0.033 4.033 23 C -0.002 4.002 24 O -0.308 6.308 25 C -0.080 4.080 26 H 0.109 0.891 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.051 0.949 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.178 0.822 37 H 0.163 0.837 38 H 0.063 0.937 39 H 0.102 0.898 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.195 8.072 3.553 8.900 hybrid contribution -0.155 -0.688 -0.818 1.080 sum 1.040 7.383 2.736 7.942 Atomic orbital electron populations 1.22885 0.80953 1.03237 1.00266 1.88041 1.20193 1.27931 1.95328 1.23044 0.94533 0.84882 1.00319 1.21423 0.93245 0.97879 0.88156 1.52599 1.74701 1.16055 1.25963 1.19136 1.07922 0.82033 1.34558 0.87955 1.25720 0.94043 1.00640 0.98906 1.69882 1.00894 1.43034 1.38269 0.85500 0.78538 0.78653 0.79174 1.22726 1.20814 1.18160 1.02416 0.74594 0.71575 0.73919 1.93398 1.87188 1.70324 1.47867 1.93399 1.77109 1.43067 1.87698 1.30257 1.25707 1.07302 1.11066 1.21177 0.96193 0.89725 0.90457 1.21575 0.94167 1.00200 1.02532 1.21697 1.00698 0.92980 0.93239 1.21072 0.93683 1.01887 0.99655 1.19365 0.95912 0.93338 0.94684 1.21588 0.91353 0.93171 0.94088 1.87776 1.33894 1.54168 1.54969 1.23128 1.02148 0.93097 0.89611 0.89147 0.92436 0.94719 0.89971 0.94949 0.89523 0.89476 0.92201 0.83453 0.83618 0.82201 0.83714 0.93687 0.89847 0.93714 0.92759 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 11.01 113.37 1.25 1.87 16 2 O -0.40 -14.61 8.59 -148.98 -1.28 -15.89 16 3 C 0.05 1.76 6.27 71.98 0.45 2.21 16 4 C 0.12 4.59 5.96 86.38 0.51 5.10 16 5 N -0.86 -40.93 1.92 -343.45 -0.66 -41.59 16 6 C -0.30 -15.67 8.67 84.03 0.73 -14.94 16 7 H 0.10 5.26 6.36 -2.91 -0.02 5.24 16 8 C 0.01 0.55 3.61 84.86 0.31 0.85 16 9 N -0.88 -46.40 7.59 21.65 0.16 -46.24 16 10 Si 0.95 45.23 29.65 68.60 2.03 47.26 16 11 H -0.30 -15.32 7.11 99.48 0.71 -14.62 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 13 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 14 S 2.68 134.48 3.89 -56.49 -0.22 134.26 16 15 O -1.00 -57.88 15.07 -128.00 -1.93 -59.81 16 16 O -1.02 -50.24 15.34 -128.00 -1.96 -52.20 16 17 C -0.65 -29.96 5.32 22.27 0.12 -29.84 16 18 C 0.04 1.88 7.30 22.27 0.16 2.04 16 19 C -0.17 -5.74 10.05 22.27 0.22 -5.52 16 20 C -0.07 -2.12 10.05 22.27 0.22 -1.90 16 21 C -0.14 -5.10 9.38 22.27 0.21 -4.89 16 22 C -0.03 -1.31 5.87 -19.87 -0.12 -1.43 16 23 C 0.07 2.98 4.97 71.24 0.35 3.33 16 24 O -0.39 -12.98 9.20 -148.98 -1.37 -14.35 16 25 C 0.02 0.38 11.01 113.37 1.25 1.63 16 26 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 28 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 3.10 8.14 -2.38 -0.02 3.08 16 32 H 0.09 3.03 7.51 -2.39 -0.02 3.01 16 33 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 34 H 0.15 6.71 5.83 -2.91 -0.02 6.69 16 35 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16 36 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 37 H 0.15 4.50 7.02 -2.91 -0.02 4.47 16 38 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 39 H 0.08 3.31 6.97 -2.39 -0.02 3.29 16 40 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -68.33 351.35 1.47 -66.86 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 1.02 Total: 23.18 kcal Atomic # 6 Polarization: -47.15 SS G_CDS: 5.67 Total: -41.48 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -0.50 Total: -87.83 kcal Atomic # 8 Polarization: -135.71 SS G_CDS: -6.54 Total: -142.25 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: 134.48 SS G_CDS: -0.22 Total: 134.26 kcal Total: -68.33 1.47 -66.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414464249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.721 kcal (2) G-P(sol) polarization free energy of solvation -68.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds