Wall clock time and date at job start Tue Mar 31 2020 06:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34962 * 125.97410 * 124.71196 * 10 9 7 12 12 C 1.35251 * 107.86128 * 179.83595 * 11 10 9 13 13 C 1.40432 * 107.86019 * 0.42675 * 12 11 10 14 14 N 1.39989 * 125.97226 * 179.70499 * 13 12 11 15 15 S 1.65594 * 119.99656 * 180.02562 * 14 13 12 16 16 O 1.42108 * 104.27851 * 181.06743 * 15 14 13 17 17 O 1.42098 * 104.28325 * 308.92699 * 15 14 13 18 18 C 1.81397 * 104.45220 * 64.99864 * 15 14 13 19 19 C 1.52998 * 109.47522 * 179.97438 * 18 15 14 20 20 O 1.42905 * 109.47153 * 180.02562 * 19 18 15 21 21 C 1.42900 * 113.99794 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.47204 * 180.02562 * 21 20 19 23 23 C 1.53003 * 117.49587 * 243.62357 * 22 21 20 24 24 C 1.52997 * 117.50276 * 175.00233 * 22 21 20 25 25 N 1.31219 * 108.04949 * 359.73606 * 13 12 11 26 26 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 28 28 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 29 29 H 1.07992 * 126.06532 * 0.02562 * 11 10 9 30 30 H 1.07997 * 126.06766 * 180.12346 * 12 11 10 31 31 H 0.96996 * 119.99891 * 0.02562 * 14 13 12 32 32 H 1.09005 * 109.47340 * 300.00203 * 18 15 14 33 33 H 1.09010 * 109.47305 * 59.99595 * 18 15 14 34 34 H 1.09001 * 109.47237 * 299.99829 * 19 18 15 35 35 H 1.08994 * 109.47189 * 59.99889 * 19 18 15 36 36 H 1.09003 * 109.47262 * 300.00000 * 21 20 19 37 37 H 1.09000 * 109.47416 * 59.99498 * 21 20 19 38 38 H 1.08999 * 115.55088 * 29.32058 * 22 21 20 39 39 H 1.09006 * 117.49700 * 359.97438 * 23 22 21 40 40 H 1.08998 * 117.49999 * 145.01356 * 23 22 21 41 41 H 1.08993 * 117.50088 * 214.98100 * 24 22 21 42 42 H 1.09005 * 117.49373 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2488 -4.6214 0.8836 12 6 3.2626 -5.4441 0.5302 13 6 3.8669 -4.9131 -0.6209 14 7 4.9594 -5.4611 -1.3033 15 16 5.5561 -4.7074 -2.6516 16 8 6.6208 -5.5456 -3.0795 17 8 4.4139 -4.4981 -3.4707 18 6 6.1984 -3.1254 -2.0390 19 6 6.7847 -2.3270 -3.2051 20 8 7.2912 -1.0810 -2.7223 21 6 7.8637 -0.2539 -3.7373 22 6 8.3710 1.0461 -3.1098 23 6 7.7063 2.3509 -3.5533 24 6 9.1266 2.0201 -4.0160 25 7 3.2287 -3.8132 -0.9445 26 1 -0.4850 -0.8400 0.0004 27 1 0.6281 -2.5591 0.8866 28 1 0.6207 -2.5548 -0.8933 29 1 1.5907 -4.7506 1.7300 30 1 3.5582 -6.3462 1.0450 31 1 5.3669 -6.2823 -0.9863 32 1 5.3888 -2.5577 -1.5802 33 1 6.9767 -3.3113 -1.2987 34 1 7.5944 -2.8948 -3.6635 35 1 6.0068 -2.1410 -3.9455 36 1 8.6954 -0.7787 -4.2074 37 1 7.1078 -0.0245 -4.4883 38 1 8.6925 0.9725 -2.0710 39 1 6.9079 2.2832 -4.2924 40 1 7.5904 3.1360 -2.8062 41 1 9.9452 2.5875 -3.5733 42 1 9.2628 1.7345 -5.0591 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424058433.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:46 Heat of formation + Delta-G solvation = -15.183533 kcal Electronic energy + Delta-G solvation = -25992.851564 eV Core-core repulsion = 22103.117809 eV Total energy + Delta-G solvation = -3889.733755 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.66905 -38.63760 -37.11674 -36.79104 -35.98148 -35.37008 -33.63857 -31.91662 -30.73128 -29.59461 -27.08982 -26.32560 -23.60735 -23.17037 -22.55697 -21.07072 -20.84705 -20.77363 -18.95030 -17.74966 -17.41558 -17.11632 -16.89659 -16.42162 -15.99827 -15.63545 -15.44607 -14.93189 -14.56215 -14.39098 -13.81537 -13.72185 -13.63544 -13.44837 -13.11079 -12.68873 -12.17040 -12.04580 -12.01405 -11.94946 -11.88226 -11.86231 -11.69700 -11.40585 -11.30076 -11.11999 -10.86742 -10.73491 -10.55635 -10.41837 -10.17780 -10.08649 -9.66437 -9.09453 -8.61284 -8.50000 -7.76466 -6.61444 -4.35983 0.13996 2.38155 2.51263 3.15251 3.25653 3.35977 3.38664 3.40204 3.57674 3.63613 3.86672 4.26346 4.37861 4.44588 4.66395 4.67928 4.73325 4.84593 4.92121 5.00655 5.13089 5.14766 5.24986 5.26836 5.37634 5.42148 5.48752 5.72763 5.80684 5.89372 5.91257 6.00415 6.01514 6.14235 6.39912 6.63566 6.87315 7.01070 7.18052 7.57889 7.67627 8.26851 8.29604 8.56624 9.31949 10.76577 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.007053 B = 0.005362 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3969.208375 B = 5220.714155 C = 8733.733718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.026 3.974 3 Si 1.072 2.928 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.609 4.609 8 H 0.064 0.936 9 C 0.247 3.753 10 N -0.310 5.310 11 C 0.069 3.931 12 C -0.303 4.303 13 C 0.275 3.725 14 N -1.013 6.013 15 S 2.619 3.381 16 O -0.959 6.959 17 O -0.923 6.923 18 C -0.630 4.630 19 C 0.081 3.919 20 O -0.371 6.371 21 C 0.088 3.912 22 C -0.155 4.155 23 C -0.176 4.176 24 C -0.174 4.174 25 N -0.305 5.305 26 H 0.267 0.733 27 H 0.048 0.952 28 H 0.039 0.961 29 H 0.172 0.828 30 H 0.143 0.857 31 H 0.431 0.569 32 H 0.158 0.842 33 H 0.138 0.862 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.114 0.886 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.781 -4.868 -3.186 15.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.179 4.179 3 Si 0.899 3.101 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.648 4.648 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.090 5.090 11 C -0.082 4.082 12 C -0.336 4.336 13 C 0.019 3.981 14 N -0.766 5.766 15 S 2.710 3.290 16 O -0.949 6.949 17 O -0.913 6.913 18 C -0.758 4.758 19 C 0.003 3.997 20 O -0.290 6.290 21 C 0.011 3.989 22 C -0.173 4.173 23 C -0.213 4.213 24 C -0.211 4.211 25 N -0.136 5.136 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.189 0.811 30 H 0.161 0.839 31 H 0.267 0.733 32 H 0.176 0.824 33 H 0.156 0.844 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.133 0.867 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 14.326 -2.269 -4.791 15.275 hybrid contribution 0.493 -2.425 1.226 2.762 sum 14.819 -4.693 -3.564 15.948 Atomic orbital electron populations 1.70854 1.06781 1.30467 1.45728 1.25876 0.96274 1.02731 0.93044 0.83486 0.74901 0.74686 0.77053 1.20496 1.21197 1.20874 1.22064 0.95370 0.90321 1.57001 0.91754 1.19855 0.86254 0.82673 0.98298 1.48808 1.23128 1.19506 1.17567 1.22464 0.99685 0.89747 0.96291 1.20865 1.04206 1.06430 1.02128 1.18736 0.90871 0.94595 0.93939 1.52608 1.39106 1.37083 1.47838 1.04862 0.74544 0.76202 0.73408 1.93610 1.57595 1.64557 1.79118 1.93668 1.48169 1.85726 1.63716 1.30698 1.13697 1.21298 1.10147 1.21934 0.97902 0.86035 0.93822 1.87967 1.78560 1.28641 1.33813 1.22090 0.96624 0.90030 0.90153 1.22116 1.04715 0.89849 1.00593 1.23103 0.95680 0.98750 1.03740 1.22970 0.95694 1.02710 0.99747 1.77421 1.04028 1.16498 1.15613 0.92229 0.93391 0.94366 0.81064 0.83950 0.73255 0.82414 0.84383 0.92025 0.91422 0.92676 0.92658 0.86743 0.88430 0.88400 0.88433 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.86 13.65 55.43 0.76 -25.11 16 2 C 0.03 0.71 5.46 -17.82 -0.10 0.61 16 3 Si 1.07 24.74 29.90 -169.99 -5.08 19.65 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.61 -16.62 9.24 -34.44 -0.32 -16.94 16 8 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 9 C 0.25 6.00 5.57 -5.19 -0.03 5.97 16 10 N -0.31 -6.77 3.67 -62.56 -0.23 -7.00 16 11 C 0.07 1.20 11.43 -17.24 -0.20 1.00 16 12 C -0.30 -4.84 10.83 -39.82 -0.43 -5.27 16 13 C 0.27 4.94 7.59 -154.55 -1.17 3.77 16 14 N -1.01 -14.47 5.81 31.39 0.18 -14.29 16 15 S 2.62 39.72 5.21 -107.50 -0.56 39.16 16 16 O -0.96 -14.76 18.08 -57.54 -1.04 -15.80 16 17 O -0.92 -17.91 17.30 -57.54 -1.00 -18.90 16 18 C -0.63 -9.07 6.37 37.16 0.24 -8.83 16 19 C 0.08 1.12 5.95 37.16 0.22 1.34 16 20 O -0.37 -5.53 10.34 -35.23 -0.36 -5.90 16 21 C 0.09 1.03 6.22 37.16 0.23 1.27 16 22 C -0.15 -1.71 6.06 -90.62 -0.55 -2.26 16 23 C -0.18 -1.82 10.18 -26.73 -0.27 -2.09 16 24 C -0.17 -1.50 10.25 -26.73 -0.27 -1.78 16 25 N -0.30 -6.68 10.73 31.41 0.34 -6.35 16 26 H 0.27 7.46 7.22 -40.82 -0.29 7.16 16 27 H 0.05 1.11 7.94 -51.93 -0.41 0.69 16 28 H 0.04 0.98 8.00 -51.93 -0.42 0.57 16 29 H 0.17 2.30 8.06 -52.49 -0.42 1.87 16 30 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.43 4.50 8.92 -34.47 -0.31 4.19 16 32 H 0.16 2.72 7.41 -51.92 -0.38 2.34 16 33 H 0.14 1.63 8.14 -51.92 -0.42 1.21 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.62 7.88 -51.93 -0.41 0.21 16 38 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.10 1.00 8.03 -51.93 -0.42 0.59 16 40 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 375.61 15.07 5.66 5.66 Total: -1.00 -35.46 375.61 -10.06 -45.52 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -6.07 Total: 6.56 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -2.65 Total: -23.22 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 1.05 Total: -52.74 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -2.40 Total: -40.60 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.08 Total: 19.65 kcal Atomic # 16 Polarization: 39.72 SS G_CDS: -0.56 Total: 39.16 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.46 -10.06 -45.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424058433.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.336 kcal (2) G-P(sol) polarization free energy of solvation -35.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds