Wall clock time and date at job start Tue Mar 31 2020 04:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00003 * 2 1 4 4 H 1.48508 * 109.46660 * 269.99714 * 3 2 1 5 5 H 1.48503 * 109.47455 * 29.99619 * 3 2 1 6 6 H 1.48499 * 109.47229 * 150.00288 * 3 2 1 7 7 C 1.37873 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00115 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99957 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47407 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00381 * 180.02562 * 10 9 7 12 12 O 1.21363 * 119.99926 * 0.02562 * 11 10 9 13 13 C 1.49335 * 120.00224 * 179.97438 * 11 10 9 14 14 O 1.21393 * 119.99932 * 359.97438 * 13 11 10 15 15 N 1.34775 * 119.99849 * 179.97438 * 13 11 10 16 16 C 1.39889 * 119.99859 * 184.23387 * 15 13 11 17 17 C 1.39036 * 120.51342 * 325.84643 * 16 15 13 18 18 C 1.38705 * 118.41886 * 180.23279 * 17 16 15 19 19 C 1.38099 * 119.35274 * 359.51421 * 18 17 16 20 20 N 1.31993 * 120.99475 * 0.26692 * 19 18 17 21 21 C 1.32148 * 121.71949 * 359.97438 * 20 19 18 22 22 O 1.35728 * 119.73076 * 180.02562 * 21 20 19 23 23 C 1.42897 * 116.99846 * 0.02562 * 22 21 20 24 24 C 1.52998 * 109.47168 * 180.02562 * 23 22 21 25 25 F 1.39899 * 109.47068 * 299.99937 * 24 23 22 26 26 F 1.39904 * 109.47308 * 59.99668 * 24 23 22 27 27 H 0.97002 * 120.00024 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47199 * 60.00153 * 9 7 2 29 29 H 1.09000 * 109.47166 * 300.00354 * 9 7 2 30 30 H 0.97001 * 119.99930 * 359.97438 * 10 9 7 31 31 H 0.97001 * 120.00436 * 4.24280 * 15 13 11 32 32 H 1.08006 * 120.79133 * 359.97438 * 17 16 15 33 33 H 1.07998 * 120.32409 * 179.78025 * 18 17 16 34 34 H 1.08008 * 119.50389 * 180.25111 * 19 18 17 35 35 H 1.09003 * 109.47037 * 299.99497 * 23 22 21 36 36 H 1.08997 * 109.47243 * 59.99926 * 23 22 21 37 37 H 1.09002 * 109.47850 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5752 0.0010 11 6 5.3249 -2.8216 0.0020 12 8 6.1135 -1.8991 0.0034 13 6 5.8226 -4.2295 0.0024 14 8 5.0338 -5.1522 0.0024 15 7 7.1477 -4.4757 0.0029 16 6 7.6146 -5.7914 -0.0861 17 6 6.9067 -6.8331 0.5028 18 6 7.4119 -8.1201 0.3920 19 6 8.5872 -8.3285 -0.3025 20 7 9.2372 -7.3219 -0.8561 21 6 8.7956 -6.0793 -0.7718 22 8 9.4962 -5.0748 -1.3569 23 6 10.6961 -5.4354 -2.0442 24 6 11.3431 -4.1804 -2.6334 25 9 10.4560 -3.5755 -3.5301 26 9 11.6473 -3.2847 -1.6026 27 1 -0.4850 0.8401 0.0004 28 1 3.8745 -0.6801 0.8911 29 1 3.8752 -0.6804 -0.8888 30 1 3.3695 -3.3125 0.0010 31 1 7.7776 -3.7407 0.0651 32 1 5.9875 -6.6441 1.0375 33 1 6.8889 -8.9517 0.8407 34 1 8.9807 -9.3303 -0.3938 35 1 11.3875 -5.9063 -1.3453 36 1 10.4591 -6.1336 -2.8470 37 1 12.2582 -4.4555 -3.1580 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427892327.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:31 Heat of formation + Delta-G solvation = -162.397959 kcal Electronic energy + Delta-G solvation = -27228.202573 eV Core-core repulsion = 22642.411641 eV Total energy + Delta-G solvation = -4585.790932 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.102 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -49.25461 -47.28502 -41.44488 -40.16928 -38.50330 -38.04039 -35.60939 -34.40206 -32.41694 -32.19375 -31.17086 -29.54485 -28.37291 -25.35972 -24.52789 -23.10170 -22.87305 -21.59214 -20.14078 -19.33738 -18.91912 -17.86524 -17.66357 -17.36470 -17.34769 -16.78511 -16.39435 -16.15947 -15.80612 -15.48946 -15.27555 -15.00674 -14.28212 -14.25584 -14.10525 -13.88424 -13.70747 -13.62579 -13.51626 -13.20886 -12.85161 -12.55168 -12.45473 -12.27272 -11.71532 -11.48093 -11.44247 -11.18574 -11.08623 -10.83465 -10.24166 -10.03220 -9.69082 -9.56998 -9.25989 -8.86517 -8.42702 -8.32774 -6.25740 -4.29704 0.64875 0.93734 1.66762 2.29336 2.44576 3.23698 3.30911 3.33713 3.34733 3.37279 3.54793 3.72738 3.81262 3.99659 4.05601 4.28523 4.35182 4.58905 4.68062 4.83160 4.83890 4.94969 4.96772 5.08648 5.10716 5.54629 5.78059 5.93110 6.19058 6.58220 6.71573 6.84182 6.91311 6.98913 7.23988 7.41085 7.63107 7.97483 8.33338 8.45542 8.74086 9.31746 10.85970 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.013453 B = 0.002962 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.755431 B = 9449.499844 C =11198.119829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.080 3.920 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.548 4.548 8 H 0.083 0.917 9 C 0.217 3.783 10 N -0.663 5.663 11 C 0.495 3.505 12 O -0.533 6.533 13 C 0.512 3.488 14 O -0.505 6.505 15 N -0.638 5.638 16 C 0.089 3.911 17 C -0.047 4.047 18 C -0.184 4.184 19 C 0.119 3.881 20 N -0.524 5.524 21 C 0.302 3.698 22 O -0.294 6.294 23 C 0.021 3.979 24 C 0.270 3.730 25 F -0.196 7.196 26 F -0.197 7.197 27 H 0.269 0.731 28 H 0.034 0.966 29 H 0.029 0.971 30 H 0.410 0.590 31 H 0.429 0.571 32 H 0.162 0.838 33 H 0.144 0.856 34 H 0.163 0.837 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.671 -16.939 -2.106 29.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.124 4.124 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.586 4.586 8 H 0.101 0.899 9 C 0.096 3.904 10 N -0.313 5.313 11 C 0.273 3.727 12 O -0.411 6.411 13 C 0.295 3.705 14 O -0.379 6.379 15 N -0.286 5.286 16 C -0.009 4.009 17 C -0.075 4.075 18 C -0.204 4.204 19 C -0.037 4.037 20 N -0.248 5.248 21 C 0.120 3.880 22 O -0.201 6.201 23 C -0.055 4.055 24 C 0.216 3.784 25 F -0.177 7.177 26 F -0.179 7.179 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.246 0.754 31 H 0.268 0.732 32 H 0.179 0.821 33 H 0.162 0.838 34 H 0.181 0.819 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 24.118 -16.548 -2.584 29.363 hybrid contribution -0.329 0.926 0.332 1.037 sum 23.789 -15.622 -2.252 28.548 Atomic orbital electron populations 1.69873 1.06213 1.27556 1.48869 1.24775 0.94813 0.99128 0.93733 0.86828 0.80556 0.83213 0.79161 1.19711 1.20754 1.18450 1.21040 0.88079 0.95548 1.53952 0.89903 1.19731 0.95819 0.77323 0.97512 1.46104 1.04786 1.12335 1.68050 1.19615 0.84715 0.87797 0.80573 1.90753 1.55286 1.44947 1.50151 1.20826 0.82198 0.91117 0.76359 1.90728 1.55055 1.45759 1.46333 1.43005 1.07879 1.06873 1.70794 1.17730 0.94752 0.86388 1.01983 1.21749 0.99743 0.90931 0.95027 1.21982 0.98009 0.97561 1.02895 1.22382 0.91690 0.96839 0.92762 1.67292 1.34813 0.98516 1.24135 1.19512 0.90204 0.86365 0.91901 1.86287 1.36412 1.30973 1.66468 1.23833 0.86658 0.96316 0.98722 1.22120 0.92069 0.84233 0.79985 1.93054 1.71284 1.85263 1.68134 1.93040 1.93664 1.70804 1.60359 0.92109 0.94825 0.95299 0.75389 0.73249 0.82100 0.83793 0.81942 0.88397 0.88374 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 3 Si 0.88 20.98 27.47 -169.99 -4.67 16.31 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 7 C -0.55 -14.92 9.83 -34.44 -0.34 -15.26 16 8 H 0.08 2.37 7.84 -52.49 -0.41 1.96 16 9 C 0.22 5.24 4.50 -5.19 -0.02 5.21 16 10 N -0.66 -13.76 5.54 -61.95 -0.34 -14.10 16 11 C 0.49 9.54 7.89 -11.64 -0.09 9.45 16 12 O -0.53 -11.33 16.48 5.49 0.09 -11.24 16 13 C 0.51 8.41 7.74 -11.64 -0.09 8.32 16 14 O -0.51 -8.61 13.92 5.46 0.08 -8.53 16 15 N -0.64 -9.03 5.18 -10.08 -0.05 -9.09 16 16 C 0.09 1.14 6.35 -83.39 -0.53 0.61 16 17 C -0.05 -0.54 8.81 -39.11 -0.34 -0.88 16 18 C -0.18 -1.55 10.10 -39.46 -0.40 -1.95 16 19 C 0.12 0.96 11.17 -17.53 -0.20 0.76 16 20 N -0.52 -5.35 9.21 -13.15 -0.12 -5.47 16 21 C 0.30 3.60 7.51 -16.92 -0.13 3.47 16 22 O -0.29 -3.45 9.58 -18.89 -0.18 -3.63 16 23 C 0.02 0.16 5.54 37.16 0.21 0.37 16 24 C 0.27 1.97 5.63 37.16 0.21 2.18 16 25 F -0.20 -2.14 17.28 2.25 0.04 -2.10 16 26 F -0.20 -2.02 17.28 2.25 0.04 -1.98 16 27 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.03 0.83 7.20 -51.93 -0.37 0.46 16 29 H 0.03 0.71 7.57 -51.93 -0.39 0.32 16 30 H 0.41 8.02 7.79 -40.82 -0.32 7.70 16 31 H 0.43 5.87 8.05 -40.82 -0.33 5.54 16 32 H 0.16 1.94 6.27 -52.48 -0.33 1.61 16 33 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.16 0.75 8.06 -52.48 -0.42 0.33 16 35 H 0.10 0.60 8.11 -51.93 -0.42 0.18 16 36 H 0.10 0.65 8.11 -51.93 -0.42 0.23 16 37 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 340.68 15.07 5.13 5.13 Total: -1.00 -33.53 340.68 -4.47 -37.99 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -3.43 Total: 7.66 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: -1.82 Total: 14.44 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 0.26 Total: -54.06 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.01 Total: -23.41 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.08 Total: -4.08 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.53 -4.47 -37.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427892327.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.404 kcal (2) G-P(sol) polarization free energy of solvation -33.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds