Wall clock time and date at job start Tue Mar 31 2020 05:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 119.99993 * 2 1 4 4 H 1.48498 * 109.47363 * 239.99530 * 3 2 1 5 5 H 1.48502 * 109.47297 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47270 * 119.99762 * 3 2 1 7 7 C 1.37885 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99898 * 175.51349 * 7 2 1 9 9 C 1.50694 * 119.99565 * 355.78910 * 7 2 1 10 10 C 1.52996 * 115.55720 * 35.31949 * 9 7 2 11 11 N 1.46498 * 109.47137 * 54.23419 * 10 9 7 12 12 C 1.34782 * 119.99846 * 185.00297 * 11 10 9 13 13 O 1.21577 * 120.00099 * 5.07509 * 12 11 10 14 14 C 1.47659 * 119.99620 * 185.07605 * 12 11 10 15 15 C 1.39875 * 120.03908 * 5.15687 * 14 12 11 16 16 C 1.37519 * 120.09426 * 179.97438 * 15 14 12 17 17 C 1.39337 * 120.25472 * 0.02562 * 16 15 14 18 18 N 1.38868 * 119.51052 * 179.97438 * 17 16 15 19 19 H 0.96996 * 119.90002 * 0.02562 * 18 17 16 20 20 C 1.34805 * 120.19317 * 179.97438 * 18 17 16 21 21 O 1.21446 * 120.32178 * 180.02562 * 20 18 17 22 22 C 1.49194 * 119.35785 * 0.02662 * 20 18 17 23 23 O 1.21455 * 120.35937 * 180.02562 * 22 20 18 24 24 N 1.34848 * 119.27432 * 359.97438 * 22 20 18 25 25 H 0.97008 * 119.96907 * 180.02562 * 24 22 20 26 26 C 1.39305 * 120.06239 * 359.96242 * 24 22 20 27 27 C 1.38687 * 119.57421 * 180.27950 * 26 24 22 28 28 C 1.53007 * 117.49815 * 249.64104 * 9 7 2 29 29 C 1.53009 * 117.49593 * 180.98678 * 9 7 2 30 30 H 0.97003 * 120.00357 * 5.00295 * 1 2 3 31 31 H 1.08990 * 109.47888 * 174.23971 * 10 9 7 32 32 H 1.09009 * 109.46640 * 294.23758 * 10 9 7 33 33 H 0.96999 * 120.00311 * 4.99795 * 11 10 9 34 34 H 1.07996 * 119.94873 * 359.97438 * 15 14 12 35 35 H 1.08007 * 119.87196 * 179.97438 * 16 15 14 36 36 H 1.07998 * 120.03782 * 0.03081 * 27 26 24 37 37 H 1.09004 * 117.49325 * 0.02562 * 28 9 7 38 38 H 1.08999 * 117.49858 * 145.02175 * 28 9 7 39 39 H 1.09002 * 117.49782 * 214.97774 * 29 9 7 40 40 H 1.08996 * 117.49411 * 359.97438 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0820 -1.1955 -0.0726 9 6 1.2541 -2.4973 0.0969 10 6 -0.0994 -2.5338 -0.6155 11 7 0.0750 -2.1393 -2.0156 12 6 -1.0008 -2.0007 -2.8156 13 8 -2.1200 -2.1125 -2.3542 14 6 -0.8200 -1.7132 -4.2526 15 6 0.4644 -1.6912 -4.8061 16 6 0.6341 -1.4240 -6.1444 17 6 -0.4705 -1.1735 -6.9558 18 7 -0.2813 -0.9049 -8.3051 19 1 0.6154 -0.8935 -8.6747 20 6 -1.3403 -0.6612 -9.1028 21 8 -1.1775 -0.4265 -10.2832 22 6 -2.7141 -0.6824 -8.5216 23 8 -3.6812 -0.4657 -9.2238 24 7 -2.8705 -0.9458 -7.2084 25 1 -3.7593 -0.9625 -6.8200 26 6 -1.7571 -1.1952 -6.4092 27 6 -1.9301 -1.4707 -5.0610 28 6 1.3915 -3.2974 1.3939 29 6 2.0774 -3.7869 0.1159 30 1 -0.4851 0.8368 -0.0733 31 1 -0.5066 -3.5438 -0.5707 32 1 -0.7863 -1.8431 -0.1262 33 1 0.9646 -1.9777 -2.3668 34 1 1.3240 -1.8843 -4.1815 35 1 1.6275 -1.4076 -6.5679 36 1 -2.9229 -1.4915 -4.6365 37 1 2.0244 -2.8808 2.1775 38 1 0.5177 -3.8499 1.7394 39 1 1.6545 -4.6613 -0.3788 40 1 3.1617 -3.6925 0.0583 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435955438.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:04 Heat of formation + Delta-G solvation = -40.055338 kcal Electronic energy + Delta-G solvation = -27211.301817 eV Core-core repulsion = 23185.045589 eV Total energy + Delta-G solvation = -4026.256228 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 12.13 seconds Orbital eigenvalues (eV) -42.07399 -39.84411 -38.83098 -38.57379 -36.81145 -35.79262 -35.25325 -33.22919 -32.27537 -30.53312 -29.80797 -26.33206 -26.03156 -25.48932 -24.06319 -23.04693 -21.37224 -20.70140 -19.62309 -19.32827 -18.87032 -18.44111 -17.91732 -17.04685 -16.72114 -16.10627 -15.96547 -15.34236 -15.00445 -14.94488 -14.48561 -14.42396 -14.27590 -14.15829 -13.91814 -13.66287 -13.19283 -12.95299 -12.68159 -11.98431 -11.88387 -11.66720 -11.55544 -11.53001 -11.13888 -10.98151 -10.80534 -10.60607 -10.39813 -10.33508 -9.84864 -9.32034 -9.07141 -8.94451 -8.90934 -8.38970 -8.21153 -7.93571 -6.08335 -4.29218 0.42883 0.65917 1.24634 2.00874 2.48736 2.49249 3.15311 3.19423 3.24523 3.25547 3.42612 3.83011 4.02221 4.16920 4.21781 4.65881 4.81998 4.93341 5.00178 5.12894 5.26899 5.38134 5.45004 5.74718 5.89253 5.92586 6.08519 6.16600 6.20757 6.25578 6.29290 6.43807 6.51886 6.60734 6.65736 6.80909 6.93757 6.99276 7.17030 7.43749 7.44473 7.52469 7.87751 8.20781 8.40111 8.72153 8.99063 9.34986 10.80490 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.017070 B = 0.003044 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.874532 B = 9194.745750 C = 9646.575595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.076 3.924 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.501 4.501 8 H 0.061 0.939 9 C 0.036 3.964 10 C 0.163 3.837 11 N -0.670 5.670 12 C 0.546 3.454 13 O -0.553 6.553 14 C -0.099 4.099 15 C -0.070 4.070 16 C -0.124 4.124 17 C 0.128 3.872 18 N -0.629 5.629 19 H 0.422 0.578 20 C 0.509 3.491 21 O -0.475 6.475 22 C 0.508 3.492 23 O -0.476 6.476 24 N -0.629 5.629 25 H 0.424 0.576 26 C 0.105 3.895 27 C -0.063 4.063 28 C -0.199 4.199 29 C -0.212 4.212 30 H 0.264 0.736 31 H 0.021 0.979 32 H 0.120 0.880 33 H 0.397 0.603 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.152 0.848 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.183 -3.390 -11.081 11.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.129 4.129 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.035 3.965 10 C 0.040 3.960 11 N -0.316 5.316 12 C 0.330 3.670 13 O -0.433 6.433 14 C -0.104 4.104 15 C -0.090 4.090 16 C -0.145 4.145 17 C 0.028 3.972 18 N -0.278 5.278 19 H 0.263 0.737 20 C 0.291 3.709 21 O -0.344 6.344 22 C 0.290 3.710 23 O -0.346 6.346 24 N -0.278 5.278 25 H 0.265 0.735 26 C 0.006 3.994 27 C -0.084 4.084 28 C -0.237 4.237 29 C -0.250 4.250 30 H 0.075 0.925 31 H 0.039 0.961 32 H 0.138 0.862 33 H 0.233 0.767 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.169 0.831 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.311 -3.041 -11.921 12.307 hybrid contribution 1.107 0.961 0.075 1.467 sum 0.796 -2.080 -11.847 12.054 Atomic orbital electron populations 1.69827 1.05655 1.26965 1.47650 1.24989 0.94834 0.99038 0.94024 0.86645 0.79585 0.82951 0.78773 1.20203 1.21207 1.20152 1.20465 0.92732 0.88532 1.52075 0.92116 1.19228 0.92796 0.89921 0.94545 1.21144 0.98400 0.96811 0.79620 1.45550 1.08178 1.66002 1.11875 1.17840 0.85471 0.78694 0.84957 1.90728 1.24159 1.52546 1.75886 1.20100 0.92950 1.02259 0.95088 1.21286 0.97112 0.96284 0.94289 1.20587 0.96906 1.03533 0.93494 1.17482 0.92932 1.03402 0.83366 1.43609 1.11079 1.65784 1.07333 0.73745 1.20175 0.85444 0.78522 0.86785 1.90903 1.84478 1.44743 1.14303 1.20093 0.90197 0.78743 0.81962 1.90909 1.39338 1.45432 1.58890 1.43686 1.10083 1.65833 1.08222 0.73531 1.17200 0.84642 1.06055 0.91494 1.20764 1.00784 0.97713 0.89183 1.22948 1.01724 1.06527 0.92533 1.22969 0.98454 0.99951 1.03599 0.92494 0.96112 0.86247 0.76748 0.83769 0.83848 0.83058 0.90201 0.91425 0.91304 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.54 10.11 55.43 0.56 -20.98 16 2 C 0.08 1.81 5.31 -17.82 -0.09 1.71 16 3 Si 0.89 18.91 29.54 -169.99 -5.02 13.89 16 4 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.50 -11.70 8.44 -34.44 -0.29 -11.99 16 8 H 0.06 1.42 7.82 -52.49 -0.41 1.01 16 9 C 0.04 0.77 2.04 -155.66 -0.32 0.45 16 10 C 0.16 3.48 4.62 -4.04 -0.02 3.47 16 11 N -0.67 -12.48 4.96 -61.31 -0.30 -12.78 16 12 C 0.55 9.84 7.75 -12.41 -0.10 9.75 16 13 O -0.55 -11.85 16.32 5.30 0.09 -11.77 16 14 C -0.10 -1.33 5.87 -104.99 -0.62 -1.94 16 15 C -0.07 -0.73 9.50 -39.23 -0.37 -1.10 16 16 C -0.12 -1.01 9.83 -39.43 -0.39 -1.39 16 17 C 0.13 1.16 6.62 -83.68 -0.55 0.60 16 18 N -0.63 -5.28 5.37 -10.22 -0.05 -5.34 16 19 H 0.42 2.43 8.78 -40.82 -0.36 2.07 16 20 C 0.51 5.92 8.00 -11.69 -0.09 5.82 16 21 O -0.47 -6.92 17.80 -10.84 -0.19 -7.12 16 22 C 0.51 6.13 8.01 -11.67 -0.09 6.04 16 23 O -0.48 -7.20 17.81 -10.85 -0.19 -7.40 16 24 N -0.63 -6.06 5.39 -10.26 -0.06 -6.12 16 25 H 0.42 3.28 8.79 -40.82 -0.36 2.93 16 26 C 0.10 1.06 6.61 -83.71 -0.55 0.50 16 27 C -0.06 -0.73 9.40 -38.96 -0.37 -1.10 16 28 C -0.20 -4.02 9.96 -26.69 -0.27 -4.28 16 29 C -0.21 -3.99 9.92 -26.69 -0.26 -4.26 16 30 H 0.26 6.55 8.32 -40.82 -0.34 6.21 16 31 H 0.02 0.43 8.09 -51.93 -0.42 0.01 16 32 H 0.12 2.99 5.89 -51.92 -0.31 2.68 16 33 H 0.40 6.77 6.20 -40.82 -0.25 6.51 16 34 H 0.14 1.38 6.46 -52.49 -0.34 1.04 16 35 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 36 H 0.15 1.73 7.64 -52.49 -0.40 1.33 16 37 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 349.12 15.07 5.26 5.26 Total: -1.00 -30.45 349.12 -8.40 -38.84 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -4.10 Total: 11.23 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -4.39 Total: 2.27 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.15 Total: -45.21 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.30 Total: -26.28 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.45 -8.40 -38.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435955438.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.212 kcal (2) G-P(sol) polarization free energy of solvation -30.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.13 seconds