Wall clock time and date at job start Tue Mar 31 2020 05:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 119.99993 * 2 1 4 4 H 1.48498 * 109.47363 * 239.99530 * 3 2 1 5 5 H 1.48502 * 109.47297 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47270 * 119.99762 * 3 2 1 7 7 C 1.37885 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99898 * 175.51349 * 7 2 1 9 9 C 1.50694 * 119.99565 * 355.78910 * 7 2 1 10 10 C 1.52996 * 115.55720 * 35.31949 * 9 7 2 11 11 N 1.46498 * 109.47137 * 54.23419 * 10 9 7 12 12 C 1.34782 * 119.99846 * 185.00297 * 11 10 9 13 13 O 1.21577 * 120.00099 * 5.07509 * 12 11 10 14 14 C 1.47659 * 119.99620 * 185.07605 * 12 11 10 15 15 C 1.39875 * 120.03908 * 5.15687 * 14 12 11 16 16 C 1.37519 * 120.09426 * 179.97438 * 15 14 12 17 17 C 1.39337 * 120.25472 * 0.02562 * 16 15 14 18 18 N 1.38868 * 119.51052 * 179.97438 * 17 16 15 19 19 H 0.96996 * 119.90002 * 0.02562 * 18 17 16 20 20 C 1.34805 * 120.19317 * 179.97438 * 18 17 16 21 21 O 1.21446 * 120.32178 * 180.02562 * 20 18 17 22 22 C 1.49194 * 119.35785 * 0.02662 * 20 18 17 23 23 O 1.21455 * 120.35937 * 180.02562 * 22 20 18 24 24 N 1.34848 * 119.27432 * 359.97438 * 22 20 18 25 25 H 0.97008 * 119.96907 * 180.02562 * 24 22 20 26 26 C 1.39305 * 120.06239 * 359.96242 * 24 22 20 27 27 C 1.38687 * 119.57421 * 180.27950 * 26 24 22 28 28 C 1.53007 * 117.49815 * 249.64104 * 9 7 2 29 29 C 1.53009 * 117.49593 * 180.98678 * 9 7 2 30 30 H 0.97003 * 120.00357 * 5.00295 * 1 2 3 31 31 H 1.08990 * 109.47888 * 174.23971 * 10 9 7 32 32 H 1.09009 * 109.46640 * 294.23758 * 10 9 7 33 33 H 0.96999 * 120.00311 * 4.99795 * 11 10 9 34 34 H 1.07996 * 119.94873 * 359.97438 * 15 14 12 35 35 H 1.08007 * 119.87196 * 179.97438 * 16 15 14 36 36 H 1.07998 * 120.03782 * 0.03081 * 27 26 24 37 37 H 1.09004 * 117.49325 * 0.02562 * 28 9 7 38 38 H 1.08999 * 117.49858 * 145.02175 * 28 9 7 39 39 H 1.09002 * 117.49782 * 214.97774 * 29 9 7 40 40 H 1.08996 * 117.49411 * 359.97438 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0820 -1.1955 -0.0726 9 6 1.2541 -2.4973 0.0969 10 6 -0.0994 -2.5338 -0.6155 11 7 0.0750 -2.1393 -2.0156 12 6 -1.0008 -2.0007 -2.8156 13 8 -2.1200 -2.1125 -2.3542 14 6 -0.8200 -1.7132 -4.2526 15 6 0.4644 -1.6912 -4.8061 16 6 0.6341 -1.4240 -6.1444 17 6 -0.4705 -1.1735 -6.9558 18 7 -0.2813 -0.9049 -8.3051 19 1 0.6154 -0.8935 -8.6747 20 6 -1.3403 -0.6612 -9.1028 21 8 -1.1775 -0.4265 -10.2832 22 6 -2.7141 -0.6824 -8.5216 23 8 -3.6812 -0.4657 -9.2238 24 7 -2.8705 -0.9458 -7.2084 25 1 -3.7593 -0.9625 -6.8200 26 6 -1.7571 -1.1952 -6.4092 27 6 -1.9301 -1.4707 -5.0610 28 6 1.3915 -3.2974 1.3939 29 6 2.0774 -3.7869 0.1159 30 1 -0.4851 0.8368 -0.0733 31 1 -0.5066 -3.5438 -0.5707 32 1 -0.7863 -1.8431 -0.1262 33 1 0.9646 -1.9777 -2.3668 34 1 1.3240 -1.8843 -4.1815 35 1 1.6275 -1.4076 -6.5679 36 1 -2.9229 -1.4915 -4.6365 37 1 2.0244 -2.8808 2.1775 38 1 0.5177 -3.8499 1.7394 39 1 1.6545 -4.6613 -0.3788 40 1 3.1617 -3.6925 0.0583 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435955438.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:53 Heat of formation + Delta-G solvation = -60.977474 kcal Electronic energy + Delta-G solvation = -27212.209069 eV Core-core repulsion = 23185.045589 eV Total energy + Delta-G solvation = -4027.163480 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 5.44 seconds Orbital eigenvalues (eV) -42.97693 -40.97007 -39.83142 -39.78072 -38.38335 -36.79908 -36.15405 -34.74624 -34.06369 -31.42173 -30.79928 -27.85456 -27.23609 -26.91075 -25.07810 -23.97804 -22.91890 -21.90646 -21.07756 -20.42330 -19.99188 -19.33933 -18.90896 -18.37638 -17.64183 -17.53887 -16.90505 -16.72440 -16.64205 -16.05501 -15.86653 -15.50538 -15.43579 -15.23038 -14.96109 -14.81150 -14.50738 -14.21272 -13.98163 -13.53802 -13.30401 -13.00886 -12.83103 -12.56479 -12.49912 -12.44410 -12.26617 -11.98686 -11.89288 -11.48665 -11.37580 -10.91795 -10.74604 -10.58491 -10.09410 -9.77427 -9.57268 -9.02191 -7.87643 -6.14082 -0.51446 -0.23732 0.38770 1.13685 1.47159 1.52044 1.53076 1.57132 1.64720 2.14307 2.44260 2.47499 2.64656 2.86710 3.13105 3.35028 3.68354 3.81010 3.99636 4.12964 4.16277 4.34775 4.46220 4.57942 4.61713 4.81618 4.87697 4.92288 5.01375 5.03304 5.20551 5.25586 5.31568 5.36762 5.43050 5.47317 5.59650 5.67464 5.79922 5.94470 6.07159 6.13430 6.43832 6.57944 6.84346 7.03247 7.51680 7.58592 8.97106 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.017070 B = 0.003044 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.874532 B = 9194.745750 C = 9646.575595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.261 1.261 5 H -0.297 1.297 6 H -0.281 1.281 7 C -0.504 4.504 8 H 0.060 0.940 9 C 0.010 3.990 10 C 0.174 3.826 11 N -0.668 5.668 12 C 0.542 3.458 13 O -0.597 6.597 14 C -0.121 4.121 15 C -0.064 4.064 16 C -0.100 4.100 17 C 0.137 3.863 18 N -0.604 5.604 19 H 0.440 0.560 20 C 0.513 3.487 21 O -0.507 6.507 22 C 0.508 3.492 23 O -0.514 6.514 24 N -0.613 5.613 25 H 0.432 0.568 26 C 0.102 3.898 27 C -0.062 4.062 28 C -0.206 4.206 29 C -0.183 4.183 30 H 0.256 0.744 31 H 0.020 0.980 32 H 0.080 0.920 33 H 0.406 0.594 34 H 0.156 0.844 35 H 0.189 0.811 36 H 0.145 0.855 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.748 -3.775 -12.369 13.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.162 4.162 3 Si 0.770 3.230 4 H -0.186 1.186 5 H -0.224 1.224 6 H -0.207 1.207 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.009 3.991 10 C 0.050 3.950 11 N -0.314 5.314 12 C 0.329 3.671 13 O -0.481 6.481 14 C -0.126 4.126 15 C -0.084 4.084 16 C -0.120 4.120 17 C 0.037 3.963 18 N -0.254 5.254 19 H 0.284 0.716 20 C 0.295 3.705 21 O -0.379 6.379 22 C 0.290 3.710 23 O -0.387 6.387 24 N -0.262 5.262 25 H 0.274 0.726 26 C 0.004 3.996 27 C -0.083 4.083 28 C -0.245 4.245 29 C -0.220 4.220 30 H 0.065 0.935 31 H 0.038 0.962 32 H 0.098 0.902 33 H 0.242 0.758 34 H 0.174 0.826 35 H 0.206 0.794 36 H 0.163 0.837 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.324 -3.443 -13.189 13.828 hybrid contribution 0.345 1.028 0.550 1.216 sum 2.669 -2.415 -12.639 13.142 Atomic orbital electron populations 1.70036 1.06704 1.26658 1.49048 1.25518 0.95217 1.01332 0.94116 0.85853 0.78360 0.79860 0.78959 1.18596 1.22367 1.20682 1.20676 0.92763 0.89396 1.51314 0.92137 1.19262 0.93324 0.90634 0.95849 1.20757 0.97642 0.95604 0.80985 1.45429 1.08877 1.66209 1.10919 1.18514 0.84498 0.77271 0.86786 1.90694 1.25726 1.54412 1.77262 1.19757 0.94980 1.05425 0.92438 1.21416 0.95958 0.95611 0.95452 1.20934 0.98385 1.00711 0.92017 1.17626 0.92813 1.02344 0.83555 1.43400 1.11307 1.63992 1.06656 0.71632 1.20033 0.85687 0.78349 0.86464 1.90896 1.84815 1.46610 1.15616 1.20210 0.90184 0.78386 0.82197 1.90892 1.40508 1.47512 1.59755 1.43596 1.10689 1.64424 1.07533 0.72569 1.17148 0.85231 1.06348 0.90884 1.20642 1.00273 0.97740 0.89678 1.22974 1.02303 1.06601 0.92604 1.22962 0.98653 0.98750 1.01616 0.93464 0.96229 0.90199 0.75780 0.82623 0.79391 0.83681 0.90758 0.90789 0.89467 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.04 10.11 21.45 0.22 -44.83 16 2 C 0.04 1.90 5.31 84.66 0.45 2.35 16 3 Si 0.94 38.29 29.54 68.60 2.03 40.32 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 5 H -0.30 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.50 -23.11 8.44 25.60 0.22 -22.89 16 8 H 0.06 2.73 7.82 -2.91 -0.02 2.70 16 9 C 0.01 0.42 2.04 -52.93 -0.11 0.31 16 10 C 0.17 7.54 4.62 86.38 0.40 7.94 16 11 N -0.67 -24.77 4.96 -466.15 -2.31 -27.08 16 12 C 0.54 19.73 7.75 86.73 0.67 20.41 16 13 O -0.60 -26.62 16.32 -3.96 -0.06 -26.68 16 14 C -0.12 -3.11 5.87 -20.10 -0.12 -3.23 16 15 C -0.06 -1.14 9.50 22.50 0.21 -0.92 16 16 C -0.10 -1.14 9.83 22.36 0.22 -0.92 16 17 C 0.14 1.97 6.62 38.67 0.26 2.23 16 18 N -0.60 -8.00 5.37 -304.56 -1.64 -9.63 16 19 H 0.44 3.09 8.78 -92.71 -0.81 2.28 16 20 C 0.51 10.96 8.00 87.19 0.70 11.65 16 21 O -0.51 -14.19 17.80 11.99 0.21 -13.97 16 22 C 0.51 11.78 8.01 87.18 0.70 12.48 16 23 O -0.51 -15.59 17.81 11.97 0.21 -15.37 16 24 N -0.61 -11.11 5.39 -304.66 -1.64 -12.75 16 25 H 0.43 6.46 8.79 -92.70 -0.81 5.64 16 26 C 0.10 1.86 6.61 38.44 0.25 2.11 16 27 C -0.06 -1.38 9.40 22.67 0.21 -1.16 16 28 C -0.21 -8.14 9.96 30.62 0.30 -7.84 16 29 C -0.18 -6.44 9.92 30.62 0.30 -6.14 16 30 H 0.26 13.00 8.32 -92.71 -0.77 12.23 16 31 H 0.02 0.83 8.09 -2.39 -0.02 0.81 16 32 H 0.08 4.16 5.89 -2.38 -0.01 4.14 16 33 H 0.41 13.33 6.20 -92.71 -0.57 12.75 16 34 H 0.16 2.42 6.46 -2.91 -0.02 2.40 16 35 H 0.19 0.56 8.06 -2.91 -0.02 0.54 16 36 H 0.15 3.38 7.64 -2.91 -0.02 3.36 16 37 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.07 2.78 8.14 -2.39 -0.02 2.77 16 39 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 40 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 Total: -1.00 -67.94 349.12 0.63 -67.31 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: -1.05 Total: 26.32 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 4.67 Total: 16.38 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -5.38 Total: -94.29 kcal Atomic # 8 Polarization: -56.39 SS G_CDS: 0.36 Total: -56.03 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Total: -67.94 0.63 -67.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435955438.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.332 kcal (2) G-P(sol) polarization free energy of solvation -67.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.44 seconds