Wall clock time and date at job start Tue Mar 31 2020 05:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00230 * 2 1 4 4 H 1.48500 * 109.47314 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47230 * 299.99929 * 3 2 1 6 6 H 1.48502 * 109.47131 * 59.99903 * 3 2 1 7 7 C 1.37875 * 119.99578 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99570 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00291 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47219 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.47022 * 179.97438 * 10 9 7 12 12 O 1.42091 * 110.54285 * 68.37765 * 11 10 9 13 13 O 1.42100 * 110.54382 * 291.62215 * 11 10 9 14 14 N 1.65608 * 104.44671 * 179.97438 * 11 10 9 15 15 C 1.46506 * 119.99576 * 65.00293 * 14 11 10 16 16 C 1.50703 * 109.46429 * 164.99701 * 15 14 11 17 17 C 1.38262 * 119.94363 * 90.00329 * 16 15 14 18 18 C 1.38145 * 120.05942 * 179.97438 * 17 16 15 19 19 C 1.38732 * 119.94244 * 359.97438 * 18 17 16 20 20 O 1.35896 * 120.05873 * 180.02562 * 19 18 17 21 21 C 1.42905 * 117.00039 * 179.97438 * 20 19 18 22 22 C 1.52999 * 109.46728 * 179.97438 * 21 20 19 23 23 O 1.42904 * 109.47221 * 65.00652 * 22 21 20 24 24 C 1.38738 * 119.88718 * 0.27269 * 19 18 17 25 25 C 1.38148 * 119.94048 * 359.47662 * 24 19 18 26 26 H 0.97003 * 119.99522 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47367 * 59.99455 * 9 7 2 28 28 H 1.09000 * 109.46451 * 299.99899 * 9 7 2 29 29 H 1.09007 * 109.47128 * 59.99571 * 10 9 7 30 30 H 1.09003 * 109.47349 * 300.00227 * 10 9 7 31 31 H 0.96997 * 119.99925 * 244.99548 * 14 11 10 32 32 H 1.08992 * 109.47347 * 45.00092 * 15 14 11 33 33 H 1.08998 * 109.46921 * 284.98991 * 15 14 11 34 34 H 1.08008 * 119.97547 * 0.02562 * 17 16 15 35 35 H 1.08000 * 120.03441 * 179.97438 * 18 17 16 36 36 H 1.09000 * 109.47187 * 300.00222 * 21 20 19 37 37 H 1.09001 * 109.46558 * 60.00270 * 21 20 19 38 38 H 1.09000 * 109.46738 * 185.00163 * 22 21 20 39 39 H 1.08994 * 109.47465 * 305.00250 * 22 21 20 40 40 H 0.96699 * 113.99701 * 180.02562 * 23 22 21 41 41 H 1.07995 * 120.02746 * 179.71906 * 24 19 18 42 42 H 1.08004 * 119.97067 * 180.22662 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3380 -5.2330 0.0013 12 8 0.6637 -5.4200 -1.2353 13 8 0.6645 -5.4193 1.2386 14 7 2.5202 -6.3928 0.0005 15 6 3.4194 -6.5228 1.1499 16 6 4.1393 -7.8448 1.0772 17 6 5.3489 -7.9364 0.4137 18 6 6.0111 -9.1469 0.3460 19 6 5.4616 -10.2712 0.9450 20 8 6.1113 -11.4630 0.8803 21 6 5.4868 -12.5779 1.5202 22 6 6.3589 -13.8223 1.3418 23 8 7.5983 -13.6379 2.0287 24 6 4.2453 -10.1778 1.6057 25 6 3.5896 -8.9638 1.6750 26 1 -0.4849 0.8401 0.0004 27 1 0.6245 -2.5571 -0.8896 28 1 0.6240 -2.5566 0.8903 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8894 31 1 2.6172 -6.9859 -0.7608 32 1 2.8400 -6.4749 2.0717 33 1 4.1472 -5.7116 1.1354 34 1 5.7769 -7.0606 -0.0514 35 1 6.9557 -9.2180 -0.1726 36 1 5.3672 -12.3668 2.5828 37 1 4.5087 -12.7528 1.0721 38 1 5.8419 -14.6900 1.7518 39 1 6.5516 -13.9820 0.2810 40 1 8.2027 -14.3894 1.9580 41 1 3.8133 -11.0526 2.0689 42 1 2.6445 -8.8898 2.1923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443193638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:43 Heat of formation + Delta-G solvation = -145.718125 kcal Electronic energy + Delta-G solvation = -24735.473118 eV Core-core repulsion = 20807.786207 eV Total energy + Delta-G solvation = -3927.686910 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.49199 -38.43275 -37.04021 -36.54680 -35.43017 -34.89810 -33.87714 -31.50536 -31.14476 -30.85969 -29.66240 -25.58760 -25.42254 -24.07934 -22.34121 -21.67203 -21.30858 -18.91853 -18.71094 -18.14929 -17.50660 -16.78954 -16.43775 -16.13902 -16.02786 -15.41636 -15.20675 -15.05300 -14.61851 -14.52605 -14.49686 -14.14058 -13.83717 -13.38524 -13.30126 -12.92448 -12.70648 -12.49551 -12.25778 -11.84292 -11.73149 -11.56593 -11.48725 -11.38085 -11.16762 -11.08608 -11.06738 -10.94289 -10.62861 -10.39297 -10.37230 -9.79072 -9.47133 -9.24151 -9.00440 -8.49739 -8.39891 -6.11707 -4.17046 0.75602 1.10661 1.18732 2.78154 3.16157 3.25983 3.33320 3.36680 3.58423 3.63177 4.26683 4.34014 4.38911 4.53328 4.55121 4.60336 4.60715 4.74815 4.77822 4.89367 5.03709 5.13593 5.13997 5.23674 5.29641 5.43128 5.51052 5.66732 5.70109 5.81034 5.93019 6.03398 6.10859 6.41144 6.49597 6.51099 7.03558 7.11192 7.12837 7.31890 7.38016 7.81662 8.18682 8.86685 9.47746 10.99332 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.028186 B = 0.002000 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.172656 B =13994.688092 C =14615.612989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.590 4.590 11 S 2.594 3.406 12 O -0.968 6.968 13 O -0.968 6.968 14 N -1.124 6.124 15 C 0.160 3.840 16 C -0.132 4.132 17 C -0.063 4.063 18 C -0.154 4.154 19 C 0.132 3.868 20 O -0.308 6.308 21 C 0.058 3.942 22 C 0.078 3.922 23 O -0.567 6.567 24 C -0.212 4.212 25 C -0.059 4.059 26 H 0.264 0.736 27 H 0.033 0.967 28 H 0.034 0.966 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.413 0.587 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.382 0.618 41 H 0.127 0.873 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.651 -27.084 2.816 30.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.723 4.723 11 S 2.692 3.308 12 O -0.958 6.958 13 O -0.957 6.957 14 N -0.882 5.882 15 C 0.034 3.966 16 C -0.134 4.134 17 C -0.081 4.081 18 C -0.172 4.172 19 C 0.086 3.914 20 O -0.222 6.222 21 C -0.018 4.018 22 C 0.000 4.000 23 O -0.372 6.372 24 C -0.231 4.231 25 C -0.078 4.078 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.246 0.754 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.229 0.771 41 H 0.145 0.855 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 12.430 -26.530 3.047 29.455 hybrid contribution 1.111 0.304 -0.351 1.204 sum 13.540 -26.226 2.696 29.638 Atomic orbital electron populations 1.69970 1.06104 1.27051 1.49707 1.25074 0.94975 0.99553 0.94944 0.86415 0.79925 0.83201 0.77737 1.19659 1.20833 1.20818 1.21050 0.93104 0.89787 1.51950 0.91985 1.18971 0.92733 0.90606 0.98914 1.30444 1.13704 1.18078 1.10071 1.05512 0.74659 0.76578 0.74092 1.93551 1.71637 1.85332 1.45285 1.93535 1.71464 1.85009 1.45737 1.55891 1.52798 1.52210 1.27274 1.20118 0.92525 0.94490 0.89481 1.19764 0.96269 0.95445 1.01892 1.20962 0.93794 0.97005 0.96369 1.20421 1.02011 0.90627 1.04172 1.19064 0.91266 0.85638 0.95399 1.86119 1.47756 1.15614 1.72685 1.22879 0.95756 0.84812 0.98314 1.22203 0.85650 0.95226 0.96942 1.86572 1.28622 1.45877 1.76173 1.21226 0.96535 0.99449 1.05912 1.20958 0.98921 0.91293 0.96622 0.92611 0.94832 0.94788 0.86305 0.86078 0.75389 0.89447 0.90810 0.84799 0.85102 0.91099 0.90426 0.91352 0.92359 0.77108 0.85517 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 10 C -0.59 -10.99 6.01 37.16 0.22 -10.76 16 11 S 2.59 45.19 5.46 -107.50 -0.59 44.61 16 12 O -0.97 -19.92 18.08 -57.54 -1.04 -20.96 16 13 O -0.97 -19.63 17.50 -57.54 -1.01 -20.64 16 14 N -1.12 -14.29 5.88 -11.65 -0.07 -14.36 16 15 C 0.16 1.78 6.25 -5.19 -0.03 1.74 16 16 C -0.13 -1.37 5.28 -104.60 -0.55 -1.93 16 17 C -0.06 -0.60 9.69 -39.61 -0.38 -0.98 16 18 C -0.15 -1.53 9.99 -39.43 -0.39 -1.92 16 19 C 0.13 1.36 6.69 -39.21 -0.26 1.10 16 20 O -0.31 -3.12 10.10 -24.26 -0.25 -3.36 16 21 C 0.06 0.39 5.12 37.16 0.19 0.58 16 22 C 0.08 0.39 7.43 37.16 0.28 0.66 16 23 O -0.57 -3.84 13.63 -40.08 -0.55 -4.39 16 24 C -0.21 -2.02 9.04 -39.43 -0.36 -2.37 16 25 C -0.06 -0.60 9.69 -39.61 -0.38 -0.98 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 27 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.12 1.95 8.14 -51.92 -0.42 1.53 16 30 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 31 H 0.41 4.65 8.61 -34.48 -0.30 4.35 16 32 H 0.09 1.00 7.64 -51.93 -0.40 0.60 16 33 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.07 0.47 7.67 -51.93 -0.40 0.08 16 37 H 0.08 0.38 7.65 -51.93 -0.40 -0.02 16 38 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 39 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.38 0.72 9.12 45.56 0.42 1.14 16 41 H 0.13 0.93 6.30 -52.49 -0.33 0.60 16 42 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 LS Contribution 373.67 15.07 5.63 5.63 Total: -1.00 -38.05 373.67 -9.54 -47.59 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.17 Total: 2.85 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: -2.22 Total: -27.43 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.67 Total: -40.09 kcal Atomic # 8 Polarization: -46.50 SS G_CDS: -2.84 Total: -49.34 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 45.19 SS G_CDS: -0.59 Total: 44.61 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.05 -9.54 -47.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443193638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.125 kcal (2) G-P(sol) polarization free energy of solvation -38.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds