Wall clock time and date at job start Tue Mar 31 2020 07:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35918 * 116.99864 * 2 1 4 4 C 1.39138 * 120.47329 * 0.02562 * 3 2 1 5 5 C 1.38539 * 118.37189 * 179.97438 * 4 3 2 6 6 C 1.38249 * 119.22143 * 0.27849 * 5 4 3 7 7 N 1.31849 * 120.88717 * 359.41726 * 6 5 4 8 8 C 1.31845 * 121.77935 * 0.59722 * 7 6 5 9 9 C 1.50698 * 119.65803 * 179.72114 * 8 7 6 10 10 N 1.46504 * 109.46993 * 269.97651 * 9 8 7 11 11 S 1.65607 * 120.00016 * 164.99885 * 10 9 8 12 12 O 1.42092 * 106.40316 * 178.53916 * 11 10 9 13 13 O 1.42102 * 106.39928 * 311.46159 * 11 10 9 14 14 N 1.65601 * 107.21452 * 65.00171 * 11 10 9 15 15 C 1.46502 * 119.99927 * 270.00118 * 14 11 10 16 16 C 1.46500 * 120.00221 * 89.99960 * 14 11 10 17 17 H 1.08999 * 109.46701 * 0.02562 * 16 14 11 18 18 C 1.53003 * 109.46817 * 119.99609 * 16 14 11 19 19 C 1.50696 * 109.47387 * 240.00157 * 16 14 11 20 20 H 1.08002 * 119.99573 * 359.97438 * 19 16 14 21 21 C 1.37869 * 120.00075 * 180.02562 * 19 16 14 22 22 N 1.31516 * 120.00299 * 359.97438 * 21 19 16 23 23 Si 1.86805 * 120.00130 * 179.97438 * 21 19 16 24 24 H 1.48503 * 109.46880 * 89.99769 * 23 21 19 25 25 H 1.48499 * 109.46936 * 209.99658 * 23 21 19 26 26 H 1.48498 * 109.46974 * 329.99936 * 23 21 19 27 27 H 1.09004 * 109.46757 * 59.99801 * 1 2 3 28 28 H 1.08997 * 109.46778 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47179 * 300.00109 * 1 2 3 30 30 H 1.07995 * 120.81447 * 359.95459 * 4 3 2 31 31 H 1.08002 * 120.38514 * 179.97438 * 5 4 3 32 32 H 1.08002 * 119.55802 * 179.72089 * 6 5 4 33 33 H 1.09002 * 109.47421 * 29.97501 * 9 8 7 34 34 H 1.08999 * 109.47033 * 149.98001 * 9 8 7 35 35 H 0.97003 * 120.00295 * 345.00353 * 10 9 8 36 36 H 1.08995 * 109.47677 * 89.99839 * 15 14 11 37 37 H 1.09004 * 109.47010 * 210.00751 * 15 14 11 38 38 H 1.09000 * 109.46962 * 329.99666 * 15 14 11 39 39 H 1.08999 * 109.47029 * 60.00759 * 18 16 14 40 40 H 1.09000 * 109.46622 * 180.02562 * 18 16 14 41 41 H 1.09000 * 109.47197 * 299.99971 * 18 16 14 42 42 H 0.96996 * 120.00592 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2979 2.3842 0.0005 5 6 1.9716 3.5947 0.0011 6 6 3.3541 3.5976 -0.0048 7 7 4.0334 2.4676 0.0006 8 6 3.4305 1.2950 0.0001 9 6 4.2542 0.0331 0.0001 10 7 4.5211 -0.3758 -1.3811 11 16 5.6967 -1.4978 -1.7001 12 8 5.6863 -1.7013 -3.1063 13 8 6.8517 -1.0836 -0.9832 14 7 5.2096 -2.9257 -1.0174 15 6 5.5856 -3.2439 0.3623 16 6 4.4026 -3.8708 -1.7931 17 1 4.2251 -3.4649 -2.7890 18 6 5.1484 -5.2016 -1.9108 19 6 3.0839 -4.0936 -1.0985 20 1 2.8687 -3.5826 -0.1717 21 6 2.1527 -4.9505 -1.6457 22 7 2.4150 -5.5731 -2.7741 23 14 0.5183 -5.2273 -0.7844 24 1 -0.4731 -4.2357 -1.2735 25 1 0.0313 -6.5995 -1.0760 26 1 0.6977 -5.0666 0.6810 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.2184 2.3519 0.0002 31 1 1.4233 4.5251 0.0011 32 1 3.8849 4.5382 -0.0090 33 1 5.1981 0.2152 0.5139 34 1 3.7075 -0.7576 0.5139 35 1 4.0093 0.0106 -2.1089 36 1 4.8216 -2.8685 1.0430 37 1 5.6735 -4.3245 0.4750 38 1 6.5418 -2.7754 0.5955 39 1 5.3263 -5.6076 -0.9150 40 1 4.5481 -5.9046 -2.4883 41 1 6.1022 -5.0403 -2.4132 42 1 1.7597 -6.1757 -3.1592 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452043367.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:27 Heat of formation + Delta-G solvation = -69.333495 kcal Electronic energy + Delta-G solvation = -27419.115545 eV Core-core repulsion = 23527.033672 eV Total energy + Delta-G solvation = -3892.081873 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.84023 -38.21261 -36.60608 -36.09092 -35.17672 -35.15225 -32.55013 -32.16649 -30.74495 -29.01232 -27.57154 -26.16699 -25.47464 -25.08667 -22.99878 -22.18541 -20.70360 -18.79018 -18.23478 -17.31439 -17.21378 -16.87180 -16.36619 -16.23978 -15.89596 -15.45963 -14.92420 -14.54507 -14.27757 -13.98206 -13.74274 -13.56478 -13.30458 -13.13851 -12.84193 -12.64933 -12.41124 -11.89196 -11.70730 -11.64948 -11.55993 -11.42479 -11.30407 -11.27781 -11.10009 -10.97224 -10.81536 -10.41365 -10.22203 -9.98681 -9.91574 -9.68538 -9.30020 -9.02719 -8.50543 -8.44774 -7.89301 -6.05317 -4.12355 0.83842 1.11579 1.41210 3.09831 3.22095 3.30312 3.32678 3.45798 3.78544 4.14223 4.27340 4.37420 4.44443 4.54531 4.80574 4.98957 5.05038 5.09446 5.11653 5.25120 5.27114 5.47897 5.58184 5.74317 5.79875 5.84245 5.98917 6.13447 6.25545 6.30289 6.41930 6.71233 6.89305 6.92151 7.09950 7.15292 7.31232 7.59289 7.69843 7.83616 7.86370 8.09518 8.31546 8.91054 9.52961 10.99997 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.011023 B = 0.005631 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.568248 B = 4971.010156 C = 6928.002017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.290 6.290 3 C 0.099 3.901 4 C -0.172 4.172 5 C -0.129 4.129 6 C 0.054 3.946 7 N -0.432 5.432 8 C 0.094 3.906 9 C 0.184 3.816 10 N -1.119 6.119 11 S 2.785 3.215 12 O -0.981 6.981 13 O -0.997 6.997 14 N -0.989 5.989 15 C 0.098 3.902 16 C 0.268 3.732 17 H 0.058 0.942 18 C -0.146 4.146 19 C -0.517 4.517 20 H 0.064 0.936 21 C 0.062 3.938 22 N -0.889 5.889 23 Si 0.895 3.105 24 H -0.283 1.283 25 H -0.288 1.288 26 H -0.274 1.274 27 H 0.056 0.944 28 H 0.107 0.893 29 H 0.054 0.946 30 H 0.140 0.860 31 H 0.136 0.864 32 H 0.158 0.842 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.411 0.589 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.033 0.967 40 H 0.092 0.908 41 H 0.012 0.988 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.091 14.445 7.319 16.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.201 6.201 3 C 0.050 3.950 4 C -0.198 4.198 5 C -0.150 4.150 6 C -0.103 4.103 7 N -0.141 5.141 8 C -0.047 4.047 9 C 0.057 3.943 10 N -0.877 5.877 11 S 2.794 3.206 12 O -0.966 6.966 13 O -0.980 6.980 14 N -0.832 5.832 15 C -0.049 4.049 16 C 0.165 3.835 17 H 0.076 0.924 18 C -0.205 4.205 19 C -0.556 4.556 20 H 0.082 0.918 21 C -0.140 4.140 22 N -0.528 5.528 23 Si 0.723 3.277 24 H -0.209 1.209 25 H -0.214 1.214 26 H -0.199 1.199 27 H 0.075 0.925 28 H 0.125 0.875 29 H 0.072 0.928 30 H 0.158 0.842 31 H 0.154 0.846 32 H 0.176 0.824 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.244 0.756 36 H 0.061 0.939 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.111 0.889 41 H 0.032 0.968 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.256 14.189 6.876 15.928 hybrid contribution -3.004 0.120 0.330 3.025 sum -5.260 14.309 7.207 16.863 Atomic orbital electron populations 1.23166 0.78078 1.04922 1.00879 1.86307 1.21485 1.24884 1.87382 1.20039 0.93230 0.85631 0.96111 1.21726 1.00897 0.92118 1.05075 1.22003 0.95769 0.98187 0.98995 1.22647 0.91409 0.96425 0.99845 1.67568 1.40021 0.97470 1.09090 1.20695 0.88187 0.94104 1.01751 1.19845 0.99272 0.91487 0.83722 1.55957 1.58364 1.60400 1.12966 1.01700 0.73216 0.72611 0.73066 1.93589 1.86907 1.85493 1.30561 1.93530 1.47261 1.82229 1.75012 1.57665 1.68285 1.34450 1.22772 1.21291 0.98400 1.02907 0.82282 1.18718 0.88112 0.85555 0.91135 0.92398 1.22066 0.97678 1.00867 0.99929 1.21388 0.99420 1.25996 1.08826 0.91816 1.24914 0.98382 0.95696 0.94963 1.69882 1.35123 1.29183 1.18603 0.86557 0.83936 0.77328 0.79853 1.20890 1.21361 1.19933 0.92536 0.87462 0.92768 0.84220 0.84585 0.82439 0.89115 0.89511 0.75640 0.93872 0.90645 0.92003 0.94818 0.88905 0.96848 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.83 101.05 0.99 1.25 16 2 O -0.29 -4.11 9.55 -19.48 -0.19 -4.30 16 3 C 0.10 1.32 6.67 -39.08 -0.26 1.06 16 4 C -0.17 -1.77 9.14 -39.14 -0.36 -2.12 16 5 C -0.13 -1.17 10.11 -39.47 -0.40 -1.57 16 6 C 0.05 0.58 11.18 -17.54 -0.20 0.38 16 7 N -0.43 -6.08 10.27 -9.35 -0.10 -6.17 16 8 C 0.09 1.37 6.19 -82.41 -0.51 0.86 16 9 C 0.18 2.90 6.32 -5.19 -0.03 2.86 16 10 N -1.12 -19.52 6.05 -11.65 -0.07 -19.59 16 11 S 2.79 56.74 6.14 -107.50 -0.66 56.08 16 12 O -0.98 -23.09 16.70 -57.17 -0.95 -24.05 16 13 O -1.00 -21.12 16.21 -57.17 -0.93 -22.04 16 14 N -0.99 -20.73 3.12 -115.85 -0.36 -21.10 16 15 C 0.10 1.75 9.90 59.85 0.59 2.34 16 16 C 0.27 6.57 2.62 -69.08 -0.18 6.39 16 17 H 0.06 1.58 6.91 -51.93 -0.36 1.23 16 18 C -0.15 -3.48 8.95 37.16 0.33 -3.15 16 19 C -0.52 -13.17 8.37 -34.45 -0.29 -13.45 16 20 H 0.06 1.59 7.65 -52.49 -0.40 1.18 16 21 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 22 N -0.89 -24.37 11.32 55.43 0.63 -23.75 16 23 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 H 0.06 0.50 7.70 -51.93 -0.40 0.10 16 28 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.05 0.43 7.70 -51.93 -0.40 0.03 16 30 H 0.14 1.08 6.45 -52.49 -0.34 0.74 16 31 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 32 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.09 1.40 7.75 -51.93 -0.40 1.00 16 34 H 0.09 1.36 7.52 -51.93 -0.39 0.97 16 35 H 0.41 6.80 8.64 -34.47 -0.30 6.50 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.34 6.43 -51.93 -0.33 1.01 16 38 H 0.06 1.01 7.02 -51.93 -0.36 0.65 16 39 H 0.03 0.74 6.66 -51.93 -0.35 0.40 16 40 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 41 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 360.14 15.07 5.43 5.43 Total: -1.00 -32.95 360.14 -8.22 -41.17 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -5.60 Total: 6.89 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -0.40 Total: -3.62 kcal Atomic # 7 Polarization: -70.71 SS G_CDS: 0.10 Total: -70.61 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -2.07 Total: -50.39 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 56.74 SS G_CDS: -0.66 Total: 56.08 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.95 -8.22 -41.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452043367.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.163 kcal (2) G-P(sol) polarization free energy of solvation -32.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds