Wall clock time and date at job start Tue Mar 31 2020 07:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35910 * 117.00278 * 2 1 4 4 C 1.39142 * 120.47294 * 0.24926 * 3 2 1 5 5 C 1.38531 * 118.37524 * 180.26460 * 4 3 2 6 6 C 1.38259 * 119.22138 * 359.75212 * 5 4 3 7 7 N 1.31843 * 120.88405 * 359.97438 * 6 5 4 8 8 C 1.31837 * 121.78458 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.65954 * 179.97438 * 8 7 6 10 10 N 1.46497 * 109.47604 * 90.00405 * 9 8 7 11 11 S 1.65595 * 120.00400 * 165.00270 * 10 9 8 12 12 O 1.42101 * 106.39876 * 311.45775 * 11 10 9 13 13 O 1.42096 * 106.40242 * 178.53750 * 11 10 9 14 14 N 1.65600 * 107.21978 * 64.99328 * 11 10 9 15 15 C 1.46502 * 120.00173 * 270.00411 * 14 11 10 16 16 C 1.46506 * 119.99915 * 90.00190 * 14 11 10 17 17 H 1.09005 * 109.46943 * 0.02562 * 16 14 11 18 18 C 1.53000 * 109.47074 * 240.00242 * 16 14 11 19 19 C 1.50696 * 109.46871 * 119.99703 * 16 14 11 20 20 H 1.07999 * 120.00319 * 0.02562 * 19 16 14 21 21 C 1.37885 * 119.99717 * 180.02562 * 19 16 14 22 22 N 1.31516 * 119.99913 * 180.02562 * 21 19 16 23 23 Si 1.86798 * 119.99766 * 0.02562 * 21 19 16 24 24 H 1.48500 * 109.47353 * 269.99586 * 23 21 19 25 25 H 1.48501 * 109.47293 * 30.00037 * 23 21 19 26 26 H 1.48504 * 109.46680 * 149.99835 * 23 21 19 27 27 H 1.09004 * 109.47028 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47250 * 300.00221 * 1 2 3 29 29 H 1.09004 * 109.46573 * 60.00202 * 1 2 3 30 30 H 1.08006 * 120.81052 * 0.02562 * 4 3 2 31 31 H 1.08002 * 120.39013 * 179.72648 * 5 4 3 32 32 H 1.07998 * 119.55562 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.47218 * 329.99513 * 9 8 7 34 34 H 1.09004 * 109.47186 * 210.00387 * 9 8 7 35 35 H 0.96999 * 119.99336 * 344.99455 * 10 9 8 36 36 H 1.09005 * 109.46997 * 269.99464 * 15 14 11 37 37 H 1.08997 * 109.47497 * 29.99813 * 15 14 11 38 38 H 1.09004 * 109.47127 * 150.00311 * 15 14 11 39 39 H 1.08998 * 109.46637 * 179.97438 * 18 16 14 40 40 H 1.08997 * 109.46749 * 299.99711 * 18 16 14 41 41 H 1.08996 * 109.47024 * 59.99854 * 18 16 14 42 42 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2980 2.3841 0.0052 5 6 1.9717 3.5946 -0.0006 6 6 3.3542 3.5975 -0.0062 7 7 4.0334 2.4675 -0.0054 8 6 3.4306 1.2950 0.0001 9 6 4.2542 0.0330 0.0001 10 7 4.5266 -0.3724 1.3812 11 16 5.0818 -1.8993 1.7019 12 8 4.2349 -2.7916 0.9907 13 8 5.2779 -1.9680 3.1075 14 7 6.5822 -2.0300 1.0134 15 6 6.7165 -2.5058 -0.3657 16 6 7.7754 -1.6697 1.7834 17 1 7.4793 -1.3412 2.7797 18 6 8.5185 -0.5370 1.0722 19 6 8.6799 -2.8694 1.8988 20 1 8.3948 -3.8064 1.4437 21 6 9.8716 -2.7708 2.5854 22 7 10.6613 -3.8177 2.6856 23 14 10.3643 -1.1503 3.3730 24 1 11.1446 -0.3440 2.4002 25 1 9.1447 -0.4021 3.7706 26 1 11.1954 -1.4165 4.5746 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 0.2184 2.3518 0.0098 31 1 1.4233 4.5250 -0.0013 32 1 3.8849 4.5381 -0.0112 33 1 5.1960 0.2138 -0.5181 34 1 3.7055 -0.7590 -0.5095 35 1 4.3819 0.2536 2.1079 36 1 6.8220 -3.5908 -0.3670 37 1 5.8297 -2.2263 -0.9345 38 1 7.5978 -2.0546 -0.8216 39 1 9.4060 -0.2687 1.6454 40 1 8.8146 -0.8660 0.0761 41 1 7.8642 0.3307 0.9888 42 1 11.4998 -3.7482 3.1683 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452043370.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:35 Heat of formation + Delta-G solvation = -58.884862 kcal Electronic energy + Delta-G solvation = -27011.665836 eV Core-core repulsion = 23120.037050 eV Total energy + Delta-G solvation = -3891.628786 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 6.09 seconds Orbital eigenvalues (eV) -41.04299 -38.45014 -36.71885 -36.35855 -35.38714 -35.23877 -32.44075 -32.35013 -30.95668 -29.96642 -27.82724 -26.37087 -25.71710 -24.93386 -23.20172 -22.38081 -20.87041 -18.89090 -18.45654 -17.52763 -17.34622 -17.16331 -16.77304 -16.22390 -16.05973 -15.70845 -15.11320 -14.73776 -14.43736 -14.25127 -13.91389 -13.53922 -13.49916 -13.30405 -13.10455 -12.75471 -12.54446 -12.23393 -12.10392 -11.86012 -11.85270 -11.80753 -11.52290 -11.43202 -11.38550 -11.12262 -11.00017 -10.41142 -10.09957 -10.08517 -9.89992 -9.55654 -9.34150 -9.30772 -8.71419 -8.57783 -8.05025 -6.07164 -4.07156 0.65895 0.92973 1.22581 2.84491 3.27575 3.29859 3.40485 3.41357 3.62783 3.96427 4.11701 4.25856 4.35684 4.40420 4.62172 4.76904 4.78207 4.91353 4.97362 5.08276 5.16134 5.23177 5.36477 5.47824 5.61151 5.65621 5.81480 5.93841 6.07930 6.10348 6.26558 6.33154 6.41721 6.57178 6.63861 6.85563 6.88534 7.09367 7.37021 7.48630 7.68930 7.70154 8.53041 8.97448 9.53143 11.05883 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.019026 B = 0.003792 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.283550 B = 7383.137034 C = 8213.690223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.298 6.298 3 C 0.096 3.904 4 C -0.170 4.170 5 C -0.129 4.129 6 C 0.059 3.941 7 N -0.431 5.431 8 C 0.094 3.906 9 C 0.181 3.819 10 N -1.126 6.126 11 S 2.783 3.217 12 O -0.986 6.986 13 O -0.974 6.974 14 N -0.983 5.983 15 C 0.107 3.893 16 C 0.240 3.760 17 H 0.057 0.943 18 C -0.163 4.163 19 C -0.521 4.521 20 H 0.082 0.918 21 C 0.073 3.927 22 N -0.896 5.896 23 Si 0.882 3.118 24 H -0.277 1.277 25 H -0.264 1.264 26 H -0.294 1.294 27 H 0.106 0.894 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.160 0.840 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.412 0.588 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.059 0.941 41 H 0.035 0.965 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.215 15.429 -8.525 26.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.209 6.209 3 C 0.047 3.953 4 C -0.196 4.196 5 C -0.149 4.149 6 C -0.098 4.098 7 N -0.140 5.140 8 C -0.047 4.047 9 C 0.054 3.946 10 N -0.884 5.884 11 S 2.791 3.209 12 O -0.970 6.970 13 O -0.958 6.958 14 N -0.825 5.825 15 C -0.039 4.039 16 C 0.135 3.865 17 H 0.074 0.926 18 C -0.222 4.222 19 C -0.560 4.560 20 H 0.100 0.900 21 C -0.129 4.129 22 N -0.533 5.533 23 Si 0.712 3.288 24 H -0.204 1.204 25 H -0.189 1.189 26 H -0.222 1.222 27 H 0.124 0.876 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.158 0.842 31 H 0.156 0.844 32 H 0.177 0.823 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.244 0.756 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.509 14.333 -8.139 25.540 hybrid contribution -0.646 1.702 0.531 1.896 sum -20.156 16.034 -7.609 26.856 Atomic orbital electron populations 1.23167 0.78087 1.04733 1.01187 1.86239 1.21528 1.25360 1.87763 1.19997 0.93207 0.85434 0.96677 1.21722 1.00884 0.92085 1.04921 1.22034 0.95799 0.98258 0.98779 1.22692 0.91419 0.96468 0.99265 1.67567 1.39967 0.97431 1.09059 1.20668 0.88142 0.94149 1.01765 1.19879 0.98787 0.92219 0.83678 1.56195 1.83787 1.35325 1.13127 1.01894 0.72891 0.72885 0.73209 1.93554 1.66215 1.62142 1.75045 1.93609 1.86019 1.85815 1.30331 1.57434 1.22481 1.79371 1.23236 1.21225 1.01159 1.00134 0.81361 1.19081 0.82816 0.94490 0.90115 0.92575 1.22484 0.99701 0.98135 1.01830 1.21175 1.02897 0.96828 1.35089 0.89990 1.24905 0.96147 0.96410 0.95468 1.69880 1.11866 1.29435 1.42163 0.86948 0.78978 0.84265 0.78604 1.20390 1.18897 1.22189 0.87551 0.92524 0.92549 0.84165 0.84419 0.82251 0.89854 0.88685 0.75562 0.92699 0.93087 0.90835 0.93363 0.92181 0.94549 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.83 101.05 0.99 1.15 16 2 O -0.30 -3.29 9.54 -19.46 -0.19 -3.48 16 3 C 0.10 1.05 6.67 -39.07 -0.26 0.79 16 4 C -0.17 -1.38 9.14 -39.14 -0.36 -1.74 16 5 C -0.13 -0.94 10.11 -39.47 -0.40 -1.34 16 6 C 0.06 0.54 11.18 -17.54 -0.20 0.34 16 7 N -0.43 -5.26 10.27 -9.35 -0.10 -5.36 16 8 C 0.09 1.17 6.19 -82.42 -0.51 0.66 16 9 C 0.18 2.44 6.32 -5.20 -0.03 2.41 16 10 N -1.13 -17.23 6.05 -11.66 -0.07 -17.30 16 11 S 2.78 54.36 6.09 -107.50 -0.66 53.71 16 12 O -0.99 -20.33 16.68 -57.17 -0.95 -21.28 16 13 O -0.97 -22.51 16.70 -57.17 -0.95 -23.47 16 14 N -0.98 -20.12 3.12 -115.84 -0.36 -20.48 16 15 C 0.11 1.89 9.53 59.85 0.57 2.46 16 16 C 0.24 5.68 2.21 -69.08 -0.15 5.53 16 17 H 0.06 1.41 5.97 -51.93 -0.31 1.10 16 18 C -0.16 -3.40 8.65 37.16 0.32 -3.08 16 19 C -0.52 -14.60 8.95 -34.44 -0.31 -14.91 16 20 H 0.08 2.48 7.89 -52.49 -0.41 2.07 16 21 C 0.07 2.12 5.45 -17.82 -0.10 2.02 16 22 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 23 Si 0.88 21.88 24.37 -169.99 -4.14 17.73 16 24 H -0.28 -6.54 6.87 56.52 0.39 -6.16 16 25 H -0.26 -6.33 6.53 56.52 0.37 -5.96 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.30 7.69 -51.93 -0.40 -0.10 16 29 H 0.06 0.27 7.71 -51.93 -0.40 -0.13 16 30 H 0.14 0.76 6.45 -52.48 -0.34 0.42 16 31 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 32 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.10 1.26 7.12 -51.93 -0.37 0.89 16 35 H 0.41 5.82 8.64 -34.47 -0.30 5.53 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.73 7.79 -51.93 -0.40 0.33 16 38 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 39 H 0.05 1.06 3.28 -51.93 -0.17 0.89 16 40 H 0.06 1.18 6.66 -51.93 -0.35 0.84 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 354.14 15.07 5.34 5.34 Total: -1.00 -36.33 354.14 -7.24 -43.57 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -5.50 Total: 3.30 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -0.43 Total: -5.72 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: 0.25 Total: -69.71 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -2.09 Total: -48.23 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.14 Total: 17.73 kcal Atomic # 16 Polarization: 54.36 SS G_CDS: -0.66 Total: 53.71 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.33 -7.24 -43.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452043370.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.316 kcal (2) G-P(sol) polarization free energy of solvation -36.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.09 seconds