Wall clock time and date at job start Tue Mar 31 2020 05:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47208 * 144.94532 * 3 2 1 5 5 C 1.36938 * 119.99985 * 273.27934 * 4 3 2 6 6 H 1.08001 * 120.00273 * 186.78519 * 5 4 3 7 7 C 1.38813 * 119.99761 * 6.78571 * 5 4 3 8 8 N 1.31615 * 120.00232 * 25.23943 * 7 5 4 9 9 Si 1.86810 * 119.99858 * 205.24319 * 7 5 4 10 10 H 1.48500 * 109.46745 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47157 * 119.99859 * 9 7 5 12 12 H 1.48498 * 109.46986 * 239.99794 * 9 7 5 13 13 S 1.65598 * 120.00222 * 93.28133 * 4 3 2 14 14 O 1.42100 * 104.27460 * 333.92462 * 13 4 3 15 15 O 1.42106 * 104.27630 * 206.07308 * 13 4 3 16 16 C 1.81394 * 104.44999 * 89.99983 * 13 4 3 17 17 H 1.08995 * 109.47322 * 299.99878 * 16 13 4 18 18 C 1.52998 * 109.47400 * 60.00349 * 16 13 4 19 19 C 1.52993 * 109.47300 * 180.02562 * 18 16 13 20 20 C 1.52999 * 109.47280 * 299.99652 * 19 18 16 21 21 C 1.53001 * 109.47028 * 60.00005 * 20 19 18 22 22 C 1.53000 * 109.47001 * 180.02562 * 16 13 4 23 23 H 1.09002 * 109.47727 * 59.99380 * 22 16 13 24 24 C 1.50707 * 109.46890 * 300.00021 * 22 16 13 25 25 O 1.20818 * 120.00074 * 359.97438 * 24 22 16 26 26 O 1.34236 * 119.99721 * 180.02562 * 24 22 16 27 27 C 1.45196 * 116.99632 * 179.97438 * 26 24 22 28 28 H 4.40638 * 5.51313 * 180.02562 * 4 1 2 29 29 H 1.09007 * 109.46913 * 24.94042 * 3 2 1 30 30 H 1.09000 * 109.47208 * 264.94874 * 3 2 1 31 31 H 0.97007 * 119.99887 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.47268 * 59.99496 * 18 16 13 33 33 H 1.09003 * 109.46848 * 299.99622 * 18 16 13 34 34 H 1.09001 * 109.47180 * 179.97438 * 19 18 16 35 35 H 1.09004 * 109.47594 * 59.99549 * 19 18 16 36 36 H 1.08997 * 109.47340 * 300.00175 * 20 19 18 37 37 H 1.08997 * 109.47466 * 179.97438 * 20 19 18 38 38 H 1.09003 * 109.47205 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.47395 * 59.99747 * 21 20 19 40 40 H 1.09005 * 109.47335 * 299.99739 * 27 26 24 41 41 H 1.09000 * 109.47100 * 59.99865 * 27 26 24 42 42 H 1.08996 * 109.47411 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1339 1.1315 -0.7933 5 6 3.2982 0.9985 -2.1462 6 1 3.7598 1.7922 -2.7148 7 6 2.8715 -0.1566 -2.7869 8 7 1.9071 -0.8824 -2.2620 9 14 3.6661 -0.6811 -4.3942 10 1 4.7170 0.2986 -4.7696 11 1 4.2772 -2.0244 -4.2291 12 1 2.6353 -0.7341 -5.4618 13 16 3.4867 2.5706 -0.0539 14 8 2.6680 2.5778 1.1075 15 8 3.3150 3.5416 -1.0772 16 6 5.2367 2.4285 0.4016 17 1 5.3692 1.5818 1.0751 18 6 6.0762 2.2134 -0.8593 19 6 7.5521 2.0928 -0.4750 20 6 8.0033 3.3762 0.2252 21 6 7.1639 3.5914 1.4861 22 6 5.6873 3.7120 1.1020 23 1 5.0892 3.8650 2.0004 24 6 5.5039 4.8830 0.1712 25 8 5.0591 4.7088 -0.9385 26 8 5.8359 6.1195 0.5748 27 6 5.6330 7.1993 -0.3744 28 1 -1.0501 -0.0002 0.0004 29 1 3.0098 -0.9311 -0.4334 30 1 3.0094 0.0913 1.0237 31 1 1.6092 -1.6898 -2.7096 32 1 5.9436 3.0600 -1.5328 33 1 5.7551 1.2988 -1.3578 34 1 8.1501 1.9391 -1.3733 35 1 7.6843 1.2459 0.1984 36 1 7.8712 4.2232 -0.4481 37 1 9.0547 3.2902 0.4994 38 1 7.4850 4.5059 1.9847 39 1 7.2960 2.7444 2.1595 40 1 6.2279 7.0135 -1.2687 41 1 4.5783 7.2525 -0.6442 42 1 5.9401 8.1426 0.0772 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490984420.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:12 Heat of formation + Delta-G solvation = -74.130886 kcal Electronic energy + Delta-G solvation = -28617.628007 eV Core-core repulsion = 24693.045352 eV Total energy + Delta-G solvation = -3924.582655 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 12.72 seconds Orbital eigenvalues (eV) -40.75530 -37.86046 -36.27533 -36.03264 -35.80624 -34.65570 -31.70829 -31.37714 -31.02840 -30.58231 -27.63044 -26.40511 -24.01099 -23.51617 -22.73876 -21.26840 -19.62005 -18.36298 -17.80561 -17.20509 -17.11034 -16.39981 -16.31093 -16.09438 -15.58818 -14.75847 -14.50325 -14.38530 -14.03420 -13.73192 -13.49534 -13.24850 -13.15535 -12.82551 -12.51234 -12.24954 -12.13727 -12.06242 -11.85863 -11.63910 -11.26668 -11.19980 -11.04041 -10.92726 -10.88819 -10.81891 -10.66008 -10.39786 -10.19970 -10.16888 -10.01089 -9.67442 -9.56104 -9.22341 -8.99618 -8.64983 -8.07668 -6.22812 -3.72086 1.29219 2.44573 2.82159 3.21059 3.30651 3.34476 3.69081 4.24479 4.35434 4.42936 4.63093 4.67035 4.74511 4.90515 5.05843 5.08332 5.11997 5.20546 5.28773 5.31796 5.42016 5.44890 5.59288 5.64507 5.67897 5.76490 5.79960 5.92001 6.00591 6.16274 6.18195 6.24779 6.30074 6.48593 6.59329 6.81399 6.84852 7.09474 7.36419 7.60469 7.99144 8.42521 8.93671 9.13848 9.31637 10.73984 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014814 B = 0.005617 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.668654 B = 4983.503850 C = 5595.696980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.090 4.090 3 C 0.250 3.750 4 N -0.833 5.833 5 C -0.303 4.303 6 H 0.116 0.884 7 C 0.041 3.959 8 N -0.847 5.847 9 Si 0.899 3.101 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.284 1.284 13 S 2.560 3.440 14 O -0.985 6.985 15 O -0.925 6.925 16 C -0.605 4.605 17 H 0.129 0.871 18 C -0.111 4.111 19 C -0.113 4.113 20 C -0.123 4.123 21 C -0.100 4.100 22 C -0.059 4.059 23 H 0.110 0.890 24 C 0.419 3.581 25 O -0.430 6.430 26 O -0.363 6.363 27 C 0.034 3.966 28 H 0.196 0.804 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.266 0.734 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.422 6.348 6.569 14.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.093 4.093 3 C 0.124 3.876 4 N -0.663 5.663 5 C -0.437 4.437 6 H 0.133 0.867 7 C -0.166 4.166 8 N -0.485 5.485 9 Si 0.726 3.274 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.210 1.210 13 S 2.651 3.349 14 O -0.975 6.975 15 O -0.914 6.914 16 C -0.706 4.706 17 H 0.148 0.852 18 C -0.149 4.149 19 C -0.151 4.151 20 C -0.160 4.160 21 C -0.138 4.138 22 C -0.080 4.080 23 H 0.128 0.872 24 C 0.258 3.742 25 O -0.313 6.313 26 O -0.281 6.281 27 C -0.060 4.060 28 H 0.213 0.787 29 H 0.123 0.877 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.687 6.945 6.366 14.247 hybrid contribution 0.574 -0.733 -0.953 1.332 sum 11.261 6.212 5.413 13.954 Atomic orbital electron populations 1.24142 0.95298 1.03396 1.06506 1.22917 0.94158 0.97372 0.94841 1.17835 0.84954 0.92881 0.91894 1.53388 1.69926 1.28914 1.14031 1.19398 1.39611 1.03882 0.80778 0.86682 1.25077 0.95507 0.96923 0.99061 1.70220 1.21891 1.16222 1.40217 0.86314 0.79875 0.78737 0.82522 1.19145 1.20723 1.21042 1.07721 0.78080 0.75022 0.74083 1.93487 1.64754 1.87043 1.52195 1.93586 1.84449 1.58071 1.55334 1.31026 1.31415 1.01635 1.06519 0.85243 1.21527 0.93303 1.05627 0.94434 1.21508 0.96566 0.97044 1.00027 1.21592 0.98993 0.98763 0.96691 1.21462 0.91146 1.02916 0.98296 1.20699 1.01204 0.88720 0.97353 0.87171 1.23945 0.76713 0.84385 0.89153 1.91015 1.35958 1.84263 1.20026 1.86437 1.78597 1.16816 1.46230 1.23236 1.02725 0.87355 0.92649 0.78685 0.87684 0.92471 0.92269 0.88666 0.88827 0.91853 0.91983 0.92366 0.91690 0.90672 0.90251 0.91982 0.91609 0.88505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 69. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.43 19.25 29.55 0.57 -5.87 16 2 C -0.09 -2.25 11.17 -37.12 -0.41 -2.66 16 3 C 0.25 5.75 5.03 -6.83 -0.03 5.72 16 4 N -0.83 -19.97 2.63 -62.78 -0.17 -20.13 16 5 C -0.30 -7.71 7.89 -15.06 -0.12 -7.83 16 6 H 0.12 2.97 7.37 -52.49 -0.39 2.58 16 7 C 0.04 1.04 4.92 -17.43 -0.09 0.96 16 8 N -0.85 -21.99 8.97 55.49 0.50 -21.50 16 9 Si 0.90 19.60 29.62 -169.99 -5.04 14.56 16 10 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 S 2.56 57.52 4.45 -107.50 -0.48 57.04 16 14 O -0.99 -23.90 16.96 -57.54 -0.98 -24.88 16 15 O -0.93 -23.64 12.94 -67.55 -0.87 -24.51 16 16 C -0.60 -10.18 2.55 -26.73 -0.07 -10.25 16 17 H 0.13 1.85 8.14 -51.93 -0.42 1.43 16 18 C -0.11 -1.86 4.62 -26.74 -0.12 -1.98 16 19 C -0.11 -1.48 5.92 -26.73 -0.16 -1.63 16 20 C -0.12 -1.44 5.70 -26.73 -0.15 -1.59 16 21 C -0.10 -1.14 5.39 -26.70 -0.14 -1.29 16 22 C -0.06 -0.88 2.65 -91.74 -0.24 -1.13 16 23 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 24 C 0.42 7.07 5.41 36.01 0.19 7.27 16 25 O -0.43 -8.72 9.47 -27.10 -0.26 -8.98 16 26 O -0.36 -5.25 10.47 -39.27 -0.41 -5.66 16 27 C 0.03 0.40 10.56 101.05 1.07 1.47 16 28 H 0.20 3.79 7.80 -54.09 -0.42 3.37 16 29 H 0.11 2.42 6.42 -51.93 -0.33 2.08 16 30 H 0.06 1.13 7.67 -51.93 -0.40 0.74 16 31 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 32 H 0.10 1.79 5.51 -51.93 -0.29 1.50 16 33 H 0.09 1.66 6.78 -51.93 -0.35 1.31 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.75 7.22 -51.93 -0.37 0.37 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 41 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 42 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 346.37 15.07 5.22 5.22 Total: -1.00 -33.12 346.37 -8.11 -41.23 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.91 Total: 6.42 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: 0.29 Total: -18.82 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.33 Total: -41.63 kcal Atomic # 8 Polarization: -61.51 SS G_CDS: -2.52 Total: -64.03 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.04 Total: 14.56 kcal Atomic # 16 Polarization: 57.52 SS G_CDS: -0.48 Total: 57.04 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.12 -8.11 -41.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490984420.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.903 kcal (2) G-P(sol) polarization free energy of solvation -33.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.72 seconds