Wall clock time and date at job start Tue Mar 31 2020 05:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46796 * 155.57857 * 3 2 1 5 5 C 1.36937 * 119.99918 * 82.39866 * 4 3 2 6 6 H 1.08005 * 119.99754 * 208.73794 * 5 4 3 7 7 C 1.38812 * 120.00175 * 28.73746 * 5 4 3 8 8 N 1.31625 * 119.99616 * 42.20528 * 7 5 4 9 9 Si 1.86795 * 120.00036 * 222.20604 * 7 5 4 10 10 H 1.48499 * 109.47346 * 265.02211 * 9 7 5 11 11 H 1.48499 * 109.47301 * 25.02588 * 9 7 5 12 12 H 1.48501 * 109.46780 * 145.02682 * 9 7 5 13 13 S 1.65594 * 119.99946 * 262.39982 * 4 3 2 14 14 O 1.42096 * 104.27960 * 26.07098 * 13 4 3 15 15 O 1.42105 * 104.27979 * 153.92828 * 13 4 3 16 16 C 1.81407 * 104.45127 * 269.99939 * 13 4 3 17 17 H 1.08997 * 109.46699 * 300.00045 * 16 13 4 18 18 C 1.52998 * 109.46854 * 59.99884 * 16 13 4 19 19 C 1.52999 * 109.47067 * 180.02562 * 18 16 13 20 20 C 1.52999 * 109.47207 * 299.99932 * 19 18 16 21 21 C 1.52999 * 109.46694 * 60.00171 * 20 19 18 22 22 C 1.52989 * 109.47132 * 179.97438 * 16 13 4 23 23 H 1.08992 * 109.47722 * 299.99980 * 22 16 13 24 24 C 1.50700 * 109.47246 * 60.00195 * 22 16 13 25 25 O 1.20824 * 120.00283 * 359.97438 * 24 22 16 26 26 O 1.34239 * 120.00134 * 179.97438 * 24 22 16 27 27 C 1.45195 * 116.99883 * 180.02562 * 26 24 22 28 28 H 4.40642 * 5.51418 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.47438 * 35.57999 * 3 2 1 30 30 H 1.09000 * 109.47155 * 275.57592 * 3 2 1 31 31 H 0.96999 * 119.99963 * 359.97438 * 8 7 5 32 32 H 1.09001 * 109.47288 * 300.00341 * 18 16 13 33 33 H 1.09002 * 109.47073 * 60.00174 * 18 16 13 34 34 H 1.09002 * 109.47200 * 60.00046 * 19 18 16 35 35 H 1.09001 * 109.46907 * 180.02562 * 19 18 16 36 36 H 1.09000 * 109.47188 * 179.97438 * 20 19 18 37 37 H 1.09002 * 109.47134 * 300.00154 * 20 19 18 38 38 H 1.08997 * 109.47607 * 59.99735 * 21 20 19 39 39 H 1.09000 * 109.47118 * 180.02562 * 21 20 19 40 40 H 1.08995 * 109.47234 * 299.99832 * 27 26 24 41 41 H 1.09000 * 109.47572 * 59.99955 * 27 26 24 42 42 H 1.08999 * 109.46952 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2586 -0.5711 5 6 3.2135 2.3800 0.2107 6 1 3.1123 3.3581 -0.2361 7 6 3.4244 2.2597 1.5775 8 7 4.2984 1.3879 2.0342 9 14 2.4679 3.3350 2.7683 10 1 3.2734 4.5354 3.1079 11 1 1.1914 3.7574 2.1381 12 1 2.1786 2.5668 4.0058 13 16 3.5884 1.3243 -2.1620 14 8 2.8397 0.2889 -2.7836 15 8 3.3984 2.6850 -2.5250 16 6 5.3546 0.9107 -2.1455 17 1 5.8925 1.6386 -1.5381 18 6 5.5454 -0.4875 -1.5541 19 6 7.0351 -0.8361 -1.5396 20 6 7.5794 -0.8084 -2.9692 21 6 7.3886 0.5897 -3.5604 22 6 5.8981 0.9376 -3.5753 23 1 5.3602 0.2095 -4.1823 24 6 5.7102 2.3145 -4.1583 25 8 5.1940 3.1848 -3.4981 26 8 6.1162 2.5741 -5.4112 27 6 5.9038 3.9222 -5.9070 28 1 -1.0502 -0.0005 0.0000 29 1 3.0098 -0.8350 -0.5979 30 1 3.0094 -0.0990 1.0228 31 1 4.7948 0.8293 1.4158 32 1 5.1580 -0.5071 -0.5355 33 1 5.0075 -1.2154 -2.1615 34 1 7.5727 -0.1082 -0.9319 35 1 7.1709 -1.8324 -1.1187 36 1 8.6408 -1.0564 -2.9588 37 1 7.0418 -1.5364 -3.5768 38 1 7.9261 1.3177 -2.9528 39 1 7.7759 0.6094 -4.5791 40 1 4.8384 4.1515 -5.8910 41 1 6.4375 4.6306 -5.2734 42 1 6.2766 3.9965 -6.9285 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490984422.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:50 Heat of formation + Delta-G solvation = -96.426041 kcal Electronic energy + Delta-G solvation = -28402.834191 eV Core-core repulsion = 24477.284746 eV Total energy + Delta-G solvation = -3925.549445 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.38615 -37.91124 -36.57160 -36.13349 -35.46041 -34.31412 -32.60242 -31.36319 -31.05717 -30.60243 -27.53767 -26.70610 -23.95720 -23.47051 -22.66627 -20.67391 -19.65108 -18.83334 -18.03347 -17.37955 -17.09610 -16.57429 -16.48545 -16.00984 -15.39383 -14.98012 -14.25294 -14.15884 -14.02950 -13.86591 -13.80645 -13.47806 -13.11812 -12.90385 -12.65536 -12.35471 -12.23639 -11.92462 -11.83576 -11.31693 -11.24051 -11.15276 -10.98932 -10.91581 -10.76002 -10.56300 -10.48503 -10.32804 -10.29752 -10.27742 -10.16380 -9.82435 -9.69098 -9.39513 -9.19239 -8.98106 -8.22462 -7.16062 -4.06704 1.58741 2.55350 2.91327 3.16080 3.27245 3.43831 3.47798 3.61724 4.01452 4.30378 4.50264 4.67130 4.77061 4.85773 5.10050 5.17285 5.22793 5.24882 5.29609 5.33109 5.38309 5.44266 5.52210 5.64980 5.68431 5.79226 5.86885 5.93166 5.97121 6.14773 6.19218 6.28477 6.32758 6.37016 6.37413 6.57571 6.61242 6.67128 6.92860 7.70103 7.96333 8.08144 8.37199 8.71036 8.87214 10.07723 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.013608 B = 0.005452 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.085630 B = 5134.780385 C = 5465.493686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.155 4.155 3 C 0.219 3.781 4 N -0.801 5.801 5 C -0.319 4.319 6 H 0.112 0.888 7 C 0.018 3.982 8 N -0.809 5.809 9 Si 1.069 2.931 10 H -0.278 1.278 11 H -0.275 1.275 12 H -0.275 1.275 13 S 2.444 3.556 14 O -1.009 7.009 15 O -0.945 6.945 16 C -0.611 4.611 17 H 0.125 0.875 18 C -0.091 4.091 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.102 4.102 22 C -0.053 4.053 23 H 0.105 0.895 24 C 0.413 3.587 25 O -0.431 6.431 26 O -0.365 6.365 27 C 0.035 3.965 28 H 0.211 0.789 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.284 0.716 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.763 -3.346 -5.901 8.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.157 4.157 3 C 0.093 3.907 4 N -0.623 5.623 5 C -0.471 4.471 6 H 0.129 0.871 7 C -0.201 4.201 8 N -0.442 5.442 9 Si 0.892 3.108 10 H -0.204 1.204 11 H -0.200 1.200 12 H -0.200 1.200 13 S 2.548 3.452 14 O -0.998 6.998 15 O -0.935 6.935 16 C -0.707 4.707 17 H 0.143 0.857 18 C -0.129 4.129 19 C -0.153 4.153 20 C -0.153 4.153 21 C -0.140 4.140 22 C -0.074 4.074 23 H 0.123 0.877 24 C 0.252 3.748 25 O -0.313 6.313 26 O -0.283 6.283 27 C -0.059 4.059 28 H 0.228 0.772 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.024 -2.655 -5.208 7.708 hybrid contribution 0.832 -0.227 -1.546 1.771 sum 5.856 -2.883 -6.754 9.393 Atomic orbital electron populations 1.24632 0.95644 1.01515 1.03232 1.23611 0.94852 0.98960 0.98303 1.18195 0.84162 0.86841 1.01493 1.54165 1.63701 1.13281 1.31125 1.20667 1.47220 0.87928 0.91334 0.87071 1.26842 0.94850 1.00485 0.97877 1.70893 1.13235 1.19535 1.40534 0.83533 0.76696 0.75569 0.74991 1.20445 1.19966 1.20024 1.15550 0.77586 0.74506 0.77575 1.93319 1.69211 1.59745 1.77557 1.93459 1.84160 1.33524 1.82321 1.31025 1.36039 1.05435 0.98215 0.85703 1.21154 0.97270 0.93315 1.01206 1.21504 0.96034 1.01320 0.96409 1.21522 1.00752 0.96194 0.96854 1.21462 0.92796 0.98073 1.01634 1.20665 1.00366 0.90975 0.95352 0.87678 1.24137 0.77316 0.92636 0.80699 1.91080 1.34420 1.46617 1.59143 1.86439 1.76302 1.34038 1.31543 1.23213 1.02597 0.80939 0.99185 0.77176 0.89501 0.88338 0.90492 0.90510 0.91212 0.91714 0.91818 0.91705 0.91708 0.91384 0.90927 0.91769 0.92045 0.88526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.51 19.25 29.55 0.57 -3.94 16 2 C -0.16 -3.42 13.60 -37.12 -0.50 -3.93 16 3 C 0.22 4.78 4.18 -6.83 -0.03 4.75 16 4 N -0.80 -19.22 2.42 -62.77 -0.15 -19.38 16 5 C -0.32 -8.06 8.90 -15.06 -0.13 -8.20 16 6 H 0.11 3.00 7.36 -52.48 -0.39 2.61 16 7 C 0.02 0.43 4.51 -17.43 -0.08 0.35 16 8 N -0.81 -19.24 12.39 55.49 0.69 -18.55 16 9 Si 1.07 21.64 30.06 -169.99 -5.11 16.53 16 10 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 11 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 12 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 13 S 2.44 59.01 4.44 -107.50 -0.48 58.53 16 14 O -1.01 -25.73 16.82 -57.54 -0.97 -26.70 16 15 O -0.95 -26.19 12.95 -67.55 -0.87 -27.07 16 16 C -0.61 -11.86 1.97 -26.74 -0.05 -11.91 16 17 H 0.12 2.55 8.10 -51.93 -0.42 2.13 16 18 C -0.09 -1.51 4.49 -26.73 -0.12 -1.63 16 19 C -0.11 -1.55 5.92 -26.73 -0.16 -1.71 16 20 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 21 C -0.10 -1.39 5.14 -26.70 -0.14 -1.53 16 22 C -0.05 -0.93 2.17 -91.75 -0.20 -1.13 16 23 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 24 C 0.41 8.03 6.92 36.01 0.25 8.28 16 25 O -0.43 -10.03 11.77 -27.11 -0.32 -10.35 16 26 O -0.37 -6.02 10.47 -39.28 -0.41 -6.43 16 27 C 0.03 0.46 10.56 101.05 1.07 1.53 16 28 H 0.21 3.10 7.80 -54.08 -0.42 2.68 16 29 H 0.09 1.71 6.59 -51.93 -0.34 1.37 16 30 H 0.10 2.12 5.63 -51.93 -0.29 1.83 16 31 H 0.28 6.55 7.81 -40.82 -0.32 6.23 16 32 H 0.08 1.30 6.55 -51.93 -0.34 0.96 16 33 H 0.07 1.12 8.11 -51.93 -0.42 0.70 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16 40 H 0.06 0.92 8.13 -51.93 -0.42 0.49 16 41 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 42 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 355.49 15.07 5.36 5.36 Total: -1.00 -32.49 355.49 -7.92 -40.41 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -5.96 Total: 8.28 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 0.31 Total: -20.63 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.54 Total: -37.93 kcal Atomic # 8 Polarization: -67.98 SS G_CDS: -2.57 Total: -70.55 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.11 Total: 16.53 kcal Atomic # 16 Polarization: 59.01 SS G_CDS: -0.48 Total: 58.53 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.49 -7.92 -40.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490984422.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.015 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds