Wall clock time and date at job start Tue Mar 31 2020 05:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47518 * 21.19078 * 3 2 1 5 5 C 1.36935 * 119.99866 * 273.37133 * 4 3 2 6 6 H 1.08003 * 119.99948 * 186.59209 * 5 4 3 7 7 C 1.38810 * 120.00028 * 6.58969 * 5 4 3 8 8 N 1.31623 * 119.99819 * 25.51664 * 7 5 4 9 9 Si 1.86797 * 119.99962 * 205.51744 * 7 5 4 10 10 H 1.48505 * 109.47178 * 60.00151 * 9 7 5 11 11 H 1.48508 * 109.47127 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47126 * 299.99889 * 9 7 5 13 13 S 1.65600 * 120.00153 * 93.37337 * 4 3 2 14 14 O 1.42094 * 104.27873 * 153.92840 * 13 4 3 15 15 O 1.42102 * 104.27711 * 26.06824 * 13 4 3 16 16 C 1.81397 * 104.44859 * 270.00047 * 13 4 3 17 17 H 1.09003 * 109.47439 * 64.99458 * 16 13 4 18 18 C 1.53008 * 109.47045 * 304.99896 * 16 13 4 19 19 C 1.52997 * 109.47186 * 179.97438 * 18 16 13 20 20 C 1.53008 * 109.46911 * 59.99971 * 19 18 16 21 21 C 1.52995 * 109.47118 * 299.99754 * 20 19 18 22 22 C 1.52997 * 109.47029 * 60.00318 * 21 20 19 23 23 H 1.09003 * 109.47571 * 59.99557 * 22 21 20 24 24 C 1.50700 * 109.47180 * 179.97438 * 22 21 20 25 25 O 1.20832 * 120.00115 * 119.99772 * 24 22 21 26 26 O 1.34223 * 120.00228 * 300.00232 * 24 22 21 27 27 C 1.45199 * 117.00247 * 180.02562 * 26 24 22 28 28 H 4.40637 * 5.51404 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.47082 * 261.18378 * 3 2 1 30 30 H 1.09007 * 109.46751 * 141.19171 * 3 2 1 31 31 H 0.97004 * 119.99421 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.46605 * 60.00222 * 18 16 13 33 33 H 1.08993 * 109.46565 * 300.00193 * 18 16 13 34 34 H 1.09000 * 109.47077 * 300.00321 * 19 18 16 35 35 H 1.08993 * 109.47460 * 179.97438 * 19 18 16 36 36 H 1.09000 * 109.46771 * 180.02562 * 20 19 18 37 37 H 1.09000 * 109.46964 * 60.00281 * 20 19 18 38 38 H 1.09000 * 109.47633 * 300.00117 * 21 20 19 39 39 H 1.09004 * 109.47098 * 180.02562 * 21 20 19 40 40 H 1.08996 * 109.47481 * 59.99613 * 27 26 24 41 41 H 1.08998 * 109.47037 * 299.99292 * 27 26 24 42 42 H 1.09000 * 109.47406 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2869 -0.4992 5 6 3.2980 -2.3383 0.3628 6 1 3.7576 -3.2529 0.0183 7 6 2.8726 -2.2285 1.6796 8 7 1.9063 -1.3909 1.9913 9 14 3.6714 -3.2695 3.0090 10 1 5.1226 -2.9611 3.0740 11 1 3.0415 -2.9675 4.3196 12 1 3.4847 -4.7079 2.6904 13 16 3.4907 -1.4709 -2.1061 14 8 4.4588 -2.5106 -2.1339 15 8 3.8121 -0.1586 -2.5464 16 6 1.9349 -2.0296 -2.8530 17 1 1.1874 -1.2407 -2.7687 18 6 1.4400 -3.2809 -2.1247 19 6 0.1275 -3.7519 -2.7542 20 6 0.3587 -4.0791 -4.2308 21 6 0.8535 -2.8279 -4.9591 22 6 2.1660 -2.3570 -4.3296 23 1 2.9133 -3.1460 -4.4142 24 6 2.6537 -1.1249 -5.0473 25 8 2.8012 -0.0906 -4.4402 26 8 2.9243 -1.1763 -6.3610 27 6 3.3906 0.0483 -6.9864 28 1 -1.0497 -0.0005 0.0000 29 1 3.0093 0.1583 1.0155 30 1 3.0089 0.8017 -0.6441 31 1 1.6093 -1.3140 2.9116 32 1 1.2749 -3.0476 -1.0728 33 1 2.1875 -4.0697 -2.2089 34 1 -0.6197 -2.9628 -2.6696 35 1 -0.2248 -4.6435 -2.2357 36 1 -0.5765 -4.4142 -4.6794 37 1 1.1059 -4.8682 -4.3154 38 1 0.1063 -2.0388 -4.8745 39 1 1.0177 -3.0609 -6.0112 40 1 4.3161 0.3705 -6.5093 41 1 2.6341 0.8249 -6.8735 42 1 3.5720 -0.1312 -8.0462 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490984423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:11 Heat of formation + Delta-G solvation = -86.612868 kcal Electronic energy + Delta-G solvation = -28575.496809 eV Core-core repulsion = 24650.372895 eV Total energy + Delta-G solvation = -3925.123914 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -40.41554 -37.82472 -36.35083 -36.16123 -35.50530 -34.40878 -31.98452 -31.30170 -31.01183 -30.49868 -27.55348 -26.53101 -23.98707 -23.51705 -22.55491 -20.62171 -19.61312 -18.31247 -17.87098 -17.25132 -16.86071 -16.65323 -16.39289 -16.05638 -15.38478 -14.62909 -14.52980 -14.04383 -13.96156 -13.77887 -13.49583 -13.31618 -13.00256 -12.90838 -12.40940 -12.25619 -12.13942 -11.83316 -11.78886 -11.23823 -11.20634 -11.10293 -10.88682 -10.82796 -10.78522 -10.72758 -10.44866 -10.41997 -10.33597 -10.15441 -10.11047 -9.77991 -9.58644 -9.22139 -9.03754 -8.76448 -8.22315 -6.54216 -3.89567 1.60307 2.49485 2.89375 3.11490 3.16812 3.23918 3.70496 4.04247 4.20094 4.43448 4.68383 4.74613 4.84556 4.92482 5.20933 5.22622 5.26815 5.30250 5.35911 5.43826 5.55483 5.60877 5.61698 5.63356 5.82616 5.86083 5.94259 6.10753 6.24167 6.33711 6.34905 6.39875 6.46360 6.60942 6.75782 6.81090 6.82765 7.03202 7.18893 7.31526 8.02261 8.22890 8.63808 8.92427 9.06514 10.37753 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015768 B = 0.005441 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.291487 B = 5144.580363 C = 5531.234490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.104 4.104 3 C 0.234 3.766 4 N -0.798 5.798 5 C -0.249 4.249 6 H 0.120 0.880 7 C 0.030 3.970 8 N -0.822 5.822 9 Si 0.925 3.075 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.269 1.269 13 S 2.481 3.519 14 O -0.986 6.986 15 O -0.964 6.964 16 C -0.608 4.608 17 H 0.119 0.881 18 C -0.090 4.090 19 C -0.114 4.114 20 C -0.116 4.116 21 C -0.100 4.100 22 C -0.057 4.057 23 H 0.110 0.890 24 C 0.419 3.581 25 O -0.443 6.443 26 O -0.363 6.363 27 C 0.034 3.966 28 H 0.195 0.805 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.275 0.725 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.740 -2.055 -8.994 9.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.107 4.107 3 C 0.109 3.891 4 N -0.621 5.621 5 C -0.395 4.395 6 H 0.138 0.862 7 C -0.182 4.182 8 N -0.461 5.461 9 Si 0.750 3.250 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.194 1.194 13 S 2.578 3.422 14 O -0.976 6.976 15 O -0.953 6.953 16 C -0.706 4.706 17 H 0.137 0.863 18 C -0.128 4.128 19 C -0.152 4.152 20 C -0.154 4.154 21 C -0.138 4.138 22 C -0.077 4.077 23 H 0.128 0.872 24 C 0.259 3.741 25 O -0.326 6.326 26 O -0.281 6.281 27 C -0.060 4.060 28 H 0.212 0.788 29 H 0.131 0.869 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.949 -1.410 -9.376 9.930 hybrid contribution -0.898 -0.452 0.575 1.158 sum -3.847 -1.862 -8.801 9.784 Atomic orbital electron populations 1.24155 0.95240 1.03681 1.06165 1.23432 0.94543 0.97114 0.95631 1.18424 0.83774 0.85198 1.01748 1.54916 1.72041 1.14666 1.20465 1.19946 1.31722 0.98034 0.89800 0.86225 1.25503 0.95249 0.98126 0.99338 1.70230 1.21223 1.34348 1.20254 0.86000 0.79947 0.79951 0.79057 1.19363 1.20770 1.19406 1.13419 0.80134 0.74339 0.74319 1.93357 1.58943 1.59266 1.86022 1.93468 1.83976 1.37193 1.80651 1.31138 1.30738 1.07738 1.00955 0.86280 1.21154 0.96812 0.94240 1.00569 1.21508 0.98141 1.00761 0.94813 1.21534 1.00793 0.96909 0.96122 1.21430 0.94717 0.98570 0.99082 1.20737 1.00280 0.93439 0.93225 0.87244 1.24245 0.76523 0.92109 0.81271 1.91047 1.44860 1.31358 1.65332 1.86453 1.77791 1.39190 1.24618 1.23228 1.00142 0.85225 0.97414 0.78770 0.86915 0.89948 0.91420 0.88531 0.91353 0.92151 0.91980 0.91942 0.91662 0.91571 0.91013 0.91728 0.92042 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.61 19.25 29.55 0.57 -5.04 16 2 C -0.10 -2.34 11.24 -37.12 -0.42 -2.75 16 3 C 0.23 5.36 5.43 -6.83 -0.04 5.32 16 4 N -0.80 -18.96 2.50 -62.77 -0.16 -19.12 16 5 C -0.25 -5.98 7.91 -15.06 -0.12 -6.10 16 6 H 0.12 2.87 7.17 -52.48 -0.38 2.50 16 7 C 0.03 0.68 4.92 -17.43 -0.09 0.60 16 8 N -0.82 -19.21 8.98 55.49 0.50 -18.71 16 9 Si 0.93 18.37 29.62 -169.99 -5.04 13.33 16 10 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 11 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 12 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 13 S 2.48 58.51 4.41 -107.50 -0.47 58.04 16 14 O -0.99 -25.20 16.76 -57.54 -0.96 -26.17 16 15 O -0.96 -24.84 12.94 -67.47 -0.87 -25.72 16 16 C -0.61 -11.88 1.98 -26.73 -0.05 -11.94 16 17 H 0.12 2.40 8.10 -51.92 -0.42 1.98 16 18 C -0.09 -1.62 4.80 -26.73 -0.13 -1.75 16 19 C -0.11 -1.68 5.92 -26.73 -0.16 -1.83 16 20 C -0.12 -1.48 5.92 -26.73 -0.16 -1.64 16 21 C -0.10 -1.38 5.14 -26.73 -0.14 -1.52 16 22 C -0.06 -0.98 2.16 -91.77 -0.20 -1.18 16 23 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 24 C 0.42 7.84 6.93 36.01 0.25 8.09 16 25 O -0.44 -9.79 11.90 -27.04 -0.32 -10.11 16 26 O -0.36 -5.75 10.47 -39.24 -0.41 -6.16 16 27 C 0.03 0.43 10.56 101.05 1.07 1.49 16 28 H 0.20 3.29 7.80 -54.10 -0.42 2.87 16 29 H 0.11 2.60 6.43 -51.93 -0.33 2.27 16 30 H 0.08 1.84 6.84 -51.93 -0.36 1.49 16 31 H 0.27 6.16 8.31 -40.82 -0.34 5.82 16 32 H 0.10 1.96 6.70 -51.93 -0.35 1.61 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 40 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 41 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 42 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -30.16 351.93 -8.08 -38.25 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -6.04 Total: 9.31 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 0.39 Total: -18.24 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.34 Total: -37.83 kcal Atomic # 8 Polarization: -65.59 SS G_CDS: -2.57 Total: -68.16 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.04 Total: 13.33 kcal Atomic # 16 Polarization: 58.51 SS G_CDS: -0.47 Total: 58.04 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.16 -8.08 -38.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490984423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.368 kcal (2) G-P(sol) polarization free energy of solvation -30.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds