Wall clock time and date at job start Tue Mar 31 2020 05:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47461 * 13.29056 * 3 2 1 5 5 C 1.36745 * 119.99755 * 264.25690 * 4 3 2 6 6 H 1.08004 * 119.99756 * 142.14513 * 5 4 3 7 7 C 1.39087 * 120.00436 * 322.14283 * 5 4 3 8 8 N 1.31348 * 120.00541 * 160.68163 * 7 5 4 9 9 Si 1.86798 * 119.99872 * 340.68488 * 7 5 4 10 10 H 1.48499 * 109.47237 * 95.21049 * 9 7 5 11 11 H 1.48503 * 109.47301 * 215.21203 * 9 7 5 12 12 H 1.48499 * 109.47161 * 335.20976 * 9 7 5 13 13 C 1.34770 * 120.00131 * 84.25613 * 4 3 2 14 14 O 1.21776 * 120.00306 * 180.02562 * 13 4 3 15 15 C 1.41808 * 120.00187 * 0.27366 * 13 4 3 16 16 C 1.35136 * 120.00189 * 172.45077 * 15 13 4 17 17 C 1.46937 * 119.99962 * 348.72588 * 16 15 13 18 18 C 1.40006 * 120.11991 * 315.80253 * 17 16 15 19 19 C 1.37658 * 119.88355 * 179.72096 * 18 17 16 20 20 C 1.39023 * 120.11466 * 0.56052 * 19 18 17 21 21 O 1.35746 * 119.87937 * 179.74497 * 20 19 18 22 22 C 1.42898 * 117.00022 * 359.96650 * 21 20 19 23 23 C 1.50707 * 109.46933 * 180.02562 * 22 21 20 24 24 N 1.34779 * 119.99582 * 180.02562 * 23 22 21 25 25 O 1.21273 * 119.99840 * 0.02562 * 23 22 21 26 26 C 1.39025 * 120.23666 * 359.71004 * 20 19 18 27 27 C 1.37650 * 120.11859 * 0.02562 * 26 20 19 28 28 H 1.09001 * 109.47444 * 253.29142 * 3 2 1 29 29 H 1.09000 * 109.47412 * 133.28987 * 3 2 1 30 30 H 0.97000 * 120.00411 * 179.97438 * 8 7 5 31 31 H 1.08000 * 119.99566 * 352.46178 * 15 13 4 32 32 H 1.08000 * 119.99755 * 168.71638 * 16 15 13 33 33 H 1.08009 * 120.05448 * 359.97438 * 18 17 16 34 34 H 1.07995 * 119.93784 * 180.25290 * 19 18 17 35 35 H 1.08993 * 109.47501 * 300.00648 * 22 21 20 36 36 H 1.09004 * 109.46768 * 60.00737 * 22 21 20 37 37 H 0.96999 * 120.00155 * 359.97438 * 24 23 22 38 38 H 0.96996 * 119.99496 * 180.02562 * 24 23 22 39 39 H 1.08003 * 119.94296 * 179.97438 * 26 20 19 40 40 H 1.08007 * 120.06251 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3434 -0.3175 5 6 3.4370 -2.2029 0.6901 6 1 3.2116 -3.2554 0.6012 7 6 4.0733 -1.7219 1.8296 8 7 4.0639 -2.4303 2.9356 9 14 4.9410 -0.0683 1.7871 10 1 4.0237 0.9852 2.2910 11 1 6.1518 -0.1223 2.6452 12 1 5.3374 0.2469 0.3911 13 6 3.2117 -1.7325 -1.6027 14 8 3.6178 -2.8499 -1.8667 15 6 2.8646 -0.8391 -2.6478 16 6 3.1216 -1.1697 -3.9327 17 6 3.9750 -2.3265 -4.2370 18 6 5.1638 -2.5290 -3.5257 19 6 5.9568 -3.6175 -3.8109 20 6 5.5849 -4.5085 -4.8112 21 8 6.3731 -5.5774 -5.0920 22 6 7.5677 -5.7228 -4.3214 23 6 8.3086 -6.9557 -4.7713 24 7 9.4718 -7.2956 -4.1813 25 8 7.8582 -7.6418 -5.6640 26 6 4.4083 -4.3090 -5.5244 27 6 3.6054 -3.2268 -5.2436 28 1 2.9712 0.2963 0.9843 29 1 2.9710 0.7055 -0.7480 30 1 4.5079 -2.0950 3.7302 31 1 2.3949 0.1056 -2.4169 32 1 2.6996 -0.5838 -4.7358 33 1 5.4561 -1.8346 -2.7517 34 1 6.8719 -3.7768 -3.2600 35 1 8.2006 -4.8469 -4.4634 36 1 7.3102 -5.8179 -3.2665 37 1 9.8321 -6.7466 -3.4674 38 1 9.9488 -8.0889 -4.4710 39 1 4.1242 -5.0039 -6.3008 40 1 2.6913 -3.0729 -5.7979 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491368262.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:16 Heat of formation + Delta-G solvation = 4.025026 kcal Electronic energy + Delta-G solvation = -26977.968352 eV Core-core repulsion = 22953.623592 eV Total energy + Delta-G solvation = -4024.344760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.34379 -39.66658 -38.96205 -37.28582 -36.21251 -34.83706 -34.00345 -33.02883 -32.28632 -30.77519 -29.47316 -27.98845 -27.84922 -25.58312 -23.08544 -22.58051 -21.07958 -20.69877 -18.78902 -18.36150 -18.13757 -17.85067 -17.08856 -16.58448 -16.53345 -16.40128 -15.71746 -15.50238 -14.77937 -14.38614 -14.30263 -14.01516 -13.89934 -13.71529 -13.41304 -13.27639 -13.05964 -12.78994 -12.59323 -12.54936 -12.30930 -12.19281 -11.93066 -11.64524 -11.27110 -11.03735 -10.97755 -10.67474 -10.52484 -10.15477 -10.12754 -10.03442 -9.41371 -9.19085 -8.91037 -8.48534 -8.06631 -7.32704 -6.60745 -4.18285 1.09283 1.79202 2.22403 2.32136 2.61313 2.81859 2.98913 3.02520 3.05515 3.18997 3.74154 3.90950 4.00693 4.17501 4.32424 4.49979 4.51622 4.81283 4.91986 4.93950 5.08041 5.14056 5.18972 5.33038 5.42455 5.58567 5.63848 5.67115 5.77508 5.99401 6.30138 6.33290 6.42774 6.49688 6.62432 6.77640 6.89034 6.99372 7.04871 7.32414 7.57539 7.90927 7.93571 8.07136 8.27042 8.73919 9.04228 9.51933 10.50378 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.003393 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.935356 B = 8249.779447 C = 9756.133774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.205 3.795 3 C 0.176 3.824 4 N -0.454 5.454 5 C -0.316 4.316 6 H 0.111 0.889 7 C 0.060 3.940 8 N -0.851 5.851 9 Si 0.864 3.136 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.254 1.254 13 C 0.492 3.508 14 O -0.536 6.536 15 C -0.207 4.207 16 C -0.041 4.041 17 C -0.092 4.092 18 C 0.014 3.986 19 C -0.218 4.218 20 C 0.129 3.871 21 O -0.294 6.294 22 C 0.039 3.961 23 C 0.521 3.479 24 N -0.852 5.852 25 O -0.521 6.521 26 C -0.164 4.164 27 C -0.066 4.066 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.278 0.722 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.404 0.596 38 H 0.407 0.593 39 H 0.125 0.875 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.347 2.952 -11.517 15.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.114 4.114 3 C 0.049 3.951 4 N -0.175 5.175 5 C -0.443 4.443 6 H 0.128 0.872 7 C -0.147 4.147 8 N -0.486 5.486 9 Si 0.690 3.310 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.178 1.178 13 C 0.285 3.715 14 O -0.418 6.418 15 C -0.228 4.228 16 C -0.061 4.061 17 C -0.092 4.092 18 C -0.004 4.004 19 C -0.237 4.237 20 C 0.084 3.916 21 O -0.207 6.207 22 C -0.040 4.040 23 C 0.305 3.695 24 N -0.419 5.419 25 O -0.396 6.396 26 C -0.183 4.183 27 C -0.084 4.084 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.089 0.911 31 H 0.138 0.862 32 H 0.145 0.855 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.233 0.767 38 H 0.238 0.762 39 H 0.143 0.857 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.447 1.851 -12.139 14.904 hybrid contribution 1.252 0.967 1.098 1.926 sum 9.698 2.818 -11.040 14.963 Atomic orbital electron populations 1.81063 1.13186 1.08256 1.09267 1.30008 0.95765 0.92969 0.92706 1.19670 0.81126 0.89882 1.04455 1.43699 1.56163 1.11445 1.06205 1.19101 1.37350 0.93054 0.94796 0.87161 1.25444 0.96105 0.98355 0.94831 1.69694 1.39332 1.39086 1.00447 0.87128 0.80544 0.83505 0.79772 1.19609 1.20604 1.17819 1.17047 0.82960 0.88957 0.82507 1.90792 1.47855 1.21376 1.81773 1.22352 1.05488 1.00595 0.94363 1.22149 0.93936 0.94377 0.95683 1.18725 0.95722 0.96940 0.97799 1.20884 0.91528 0.95309 0.92713 1.20954 1.03122 0.98282 1.01308 1.19077 0.91132 0.86378 0.95011 1.86049 1.32433 1.44077 1.58162 1.22401 0.87318 0.97038 0.97223 1.20161 0.81143 0.86164 0.82042 1.43660 1.24637 1.32080 1.41487 1.90791 1.66503 1.52817 1.29453 1.20074 0.94199 1.00646 1.03365 1.20896 0.98090 0.93308 0.96112 0.87061 0.87048 0.91146 0.86243 0.85515 0.86157 0.86024 0.88907 0.88477 0.76748 0.76161 0.85707 0.85779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.77 18.54 42.15 0.78 -7.99 16 2 C 0.20 3.79 15.26 -20.76 -0.32 3.47 16 3 C 0.18 3.05 4.11 -6.83 -0.03 3.03 16 4 N -0.45 -9.74 2.16 -121.13 -0.26 -10.00 16 5 C -0.32 -8.07 9.37 -15.05 -0.14 -8.21 16 6 H 0.11 3.27 7.91 -52.48 -0.42 2.85 16 7 C 0.06 1.49 5.32 -17.44 -0.09 1.40 16 8 N -0.85 -22.64 13.95 55.50 0.77 -21.86 16 9 Si 0.86 17.27 24.85 -169.99 -4.22 13.05 16 10 H -0.27 -4.93 6.70 56.52 0.38 -4.56 16 11 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 12 H -0.25 -4.73 7.11 56.52 0.40 -4.33 16 13 C 0.49 10.19 6.40 -14.90 -0.10 10.09 16 14 O -0.54 -12.68 11.96 5.12 0.06 -12.62 16 15 C -0.21 -3.30 8.77 -39.32 -0.35 -3.65 16 16 C -0.04 -0.58 9.80 -37.16 -0.36 -0.94 16 17 C -0.09 -1.46 4.46 -105.05 -0.47 -1.93 16 18 C 0.01 0.24 6.65 -39.13 -0.26 -0.02 16 19 C -0.22 -3.38 9.01 -39.50 -0.36 -3.74 16 20 C 0.13 2.03 6.70 -39.00 -0.26 1.77 16 21 O -0.29 -4.51 9.66 -38.86 -0.38 -4.88 16 22 C 0.04 0.43 5.21 36.01 0.19 0.62 16 23 C 0.52 5.89 8.18 -10.98 -0.09 5.80 16 24 N -0.85 -5.38 8.87 31.22 0.28 -5.11 16 25 O -0.52 -8.49 17.34 -14.35 -0.25 -8.74 16 26 C -0.16 -2.51 9.97 -39.50 -0.39 -2.90 16 27 C -0.07 -0.97 9.79 -39.13 -0.38 -1.35 16 28 H 0.11 1.99 3.37 -51.93 -0.18 1.81 16 29 H 0.11 1.43 6.53 -51.93 -0.34 1.09 16 30 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.12 1.56 6.11 -52.49 -0.32 1.24 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.12 2.08 7.09 -52.48 -0.37 1.71 16 34 H 0.12 1.58 6.27 -52.49 -0.33 1.25 16 35 H 0.09 0.75 7.65 -51.93 -0.40 0.36 16 36 H 0.10 0.96 7.65 -51.93 -0.40 0.56 16 37 H 0.40 1.28 8.83 -40.82 -0.36 0.92 16 38 H 0.41 2.13 8.93 -40.82 -0.36 1.77 16 39 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 40 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 350.06 15.07 5.28 5.28 Total: -1.00 -35.13 350.06 -5.24 -40.37 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -3.90 Total: 9.08 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -3.41 Total: 3.44 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 1.57 Total: -44.96 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.56 Total: -26.24 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -4.22 Total: 13.05 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.13 -5.24 -40.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491368262.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.395 kcal (2) G-P(sol) polarization free energy of solvation -35.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds