Wall clock time and date at job start Tue Mar 31 2020 05:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47297 * 182.80389 * 3 2 1 5 5 C 1.36756 * 119.99930 * 263.83611 * 4 3 2 6 6 H 1.07997 * 119.99802 * 200.40465 * 5 4 3 7 7 C 1.39091 * 120.00033 * 20.39448 * 5 4 3 8 8 N 1.31347 * 119.99711 * 21.45562 * 7 5 4 9 9 Si 1.86793 * 120.00225 * 201.45504 * 7 5 4 10 10 H 1.48499 * 109.47191 * 60.00083 * 9 7 5 11 11 H 1.48506 * 109.47345 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47021 * 299.99841 * 9 7 5 13 13 C 1.34780 * 120.00342 * 83.82913 * 4 3 2 14 14 O 1.21780 * 120.00025 * 180.02562 * 13 4 3 15 15 C 1.41802 * 119.99737 * 0.02562 * 13 4 3 16 16 C 1.35129 * 119.99856 * 180.02562 * 15 13 4 17 17 C 1.46950 * 120.00107 * 180.02562 * 16 15 13 18 18 C 1.40007 * 120.11554 * 179.97438 * 17 16 15 19 19 C 1.37658 * 119.87858 * 180.02562 * 18 17 16 20 20 C 1.39025 * 120.11549 * 0.25142 * 19 18 17 21 21 O 1.35752 * 119.87920 * 179.72587 * 20 19 18 22 22 C 1.42899 * 116.99844 * 180.02562 * 21 20 19 23 23 C 1.50701 * 109.47062 * 180.02562 * 22 21 20 24 24 N 1.34778 * 119.99898 * 180.02562 * 23 22 21 25 25 O 1.21280 * 119.99570 * 359.97438 * 23 22 21 26 26 C 1.39025 * 120.23536 * 359.49053 * 20 19 18 27 27 C 1.37653 * 120.11827 * 0.50911 * 26 20 19 28 28 H 1.09001 * 109.47371 * 62.80184 * 3 2 1 29 29 H 1.09003 * 109.47242 * 302.80167 * 3 2 1 30 30 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 31 31 H 1.08000 * 120.00030 * 359.97438 * 15 13 4 32 32 H 1.08000 * 120.00114 * 359.97438 * 16 15 13 33 33 H 1.07999 * 120.06052 * 359.97438 * 18 17 16 34 34 H 1.08005 * 119.93764 * 179.97438 * 19 18 17 35 35 H 1.09008 * 109.47094 * 299.99723 * 22 21 20 36 36 H 1.09000 * 109.47122 * 59.99709 * 22 21 20 37 37 H 0.97002 * 119.99927 * 359.97438 * 24 23 22 38 38 H 0.96996 * 119.99540 * 180.02562 * 24 23 22 39 39 H 1.08001 * 119.94138 * 180.23624 * 26 20 19 40 40 H 1.08001 * 120.05726 * 179.76432 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.3804 0.0676 5 6 3.4433 2.0397 -1.0791 6 1 4.0946 2.8998 -1.0311 7 6 2.9581 1.6024 -2.3071 8 7 1.8740 0.8627 -2.3591 9 14 3.8482 2.0670 -3.8822 10 1 5.2374 1.5439 -3.8385 11 1 3.1346 1.4812 -5.0454 12 1 3.8800 3.5457 -4.0151 13 6 3.2019 2.0001 1.2597 14 8 3.6069 3.1472 1.3158 15 6 2.8419 1.3164 2.4487 16 6 2.9478 1.9378 3.6439 17 6 2.5753 1.2291 4.8761 18 6 2.6845 1.8705 6.1158 19 6 2.3347 1.2019 7.2671 20 6 1.8786 -0.1098 7.2008 21 8 1.5403 -0.7665 8.3397 22 6 1.0797 -2.1120 8.2002 23 6 0.7530 -2.6746 9.5595 24 7 0.2979 -3.9380 9.6743 25 8 0.9006 -1.9908 10.5502 26 6 1.7632 -0.7495 5.9719 27 6 2.1103 -0.0900 4.8146 28 1 2.9716 -0.4689 -0.9140 29 1 2.9716 -0.5559 0.8638 30 1 1.5354 0.5580 -3.2155 31 1 2.4823 0.2992 2.3989 32 1 3.3070 2.9551 3.6937 33 1 3.0434 2.8878 6.1688 34 1 2.4190 1.6956 8.2240 35 1 0.1856 -2.1272 7.5767 36 1 1.8581 -2.7160 7.7340 37 1 0.1802 -4.4850 8.8819 38 1 0.0873 -4.3000 10.5492 39 1 1.4047 -1.7672 5.9255 40 1 2.0238 -0.5892 3.8608 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491368272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:20 Heat of formation + Delta-G solvation = -18.982508 kcal Electronic energy + Delta-G solvation = -25964.036425 eV Core-core repulsion = 21938.693983 eV Total energy + Delta-G solvation = -4025.342442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.64018 -39.53015 -39.02211 -37.57377 -35.87267 -34.46290 -34.23622 -33.19205 -31.95188 -31.20327 -29.68503 -28.20853 -27.48755 -25.35983 -23.50023 -22.95329 -21.24903 -20.71196 -18.70661 -18.42804 -18.11816 -17.91112 -17.02965 -16.78916 -16.72518 -16.36588 -15.67699 -15.20374 -14.81437 -14.64296 -14.56336 -14.22403 -14.08867 -13.60821 -13.45819 -13.12363 -13.06130 -12.86537 -12.71864 -12.18285 -11.99539 -11.69274 -11.55147 -11.52953 -11.27746 -11.18441 -10.84763 -10.64152 -10.48963 -10.43119 -10.38305 -10.25559 -9.60133 -9.30957 -9.12193 -8.65625 -8.11636 -7.69603 -6.62985 -4.04271 0.77886 1.29300 2.06951 2.28167 2.31064 3.11235 3.16467 3.19088 3.43527 3.60171 3.77979 3.90984 4.05569 4.24079 4.30136 4.49103 4.57094 4.68191 4.73368 4.76095 4.84369 5.08649 5.21535 5.22660 5.30142 5.49513 5.51705 5.87018 5.96647 6.04890 6.11943 6.20772 6.24611 6.34344 6.38935 6.58051 6.72806 6.78969 6.94549 7.17262 7.35613 7.70363 7.88489 8.22196 8.68541 8.94033 9.09806 9.72234 10.42223 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.022972 B = 0.002208 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.584598 B =12676.412902 C =13609.540389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.243 3.757 3 C 0.219 3.781 4 N -0.429 5.429 5 C -0.306 4.306 6 H 0.111 0.889 7 C 0.031 3.969 8 N -0.866 5.866 9 Si 0.930 3.070 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.473 3.527 14 O -0.584 6.584 15 C -0.177 4.177 16 C -0.064 4.064 17 C -0.084 4.084 18 C -0.065 4.065 19 C -0.145 4.145 20 C 0.120 3.880 21 O -0.291 6.291 22 C 0.039 3.961 23 C 0.520 3.480 24 N -0.851 5.851 25 O -0.519 6.519 26 C -0.208 4.208 27 C -0.070 4.070 28 H 0.124 0.876 29 H 0.087 0.913 30 H 0.276 0.724 31 H 0.115 0.885 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.404 0.596 38 H 0.408 0.592 39 H 0.127 0.873 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.276 -12.831 16.554 20.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.076 4.076 3 C 0.092 3.908 4 N -0.147 5.147 5 C -0.433 4.433 6 H 0.129 0.871 7 C -0.174 4.174 8 N -0.504 5.504 9 Si 0.756 3.244 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.196 1.196 13 C 0.266 3.734 14 O -0.469 6.469 15 C -0.198 4.198 16 C -0.085 4.085 17 C -0.084 4.084 18 C -0.083 4.083 19 C -0.164 4.164 20 C 0.075 3.925 21 O -0.204 6.204 22 C -0.040 4.040 23 C 0.303 3.697 24 N -0.418 5.418 25 O -0.393 6.393 26 C -0.226 4.226 27 C -0.088 4.088 28 H 0.142 0.858 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.132 0.868 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.232 0.768 38 H 0.240 0.760 39 H 0.145 0.855 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.142 -11.685 17.090 20.734 hybrid contribution 0.294 -0.643 -1.328 1.505 sum -0.848 -12.328 15.761 20.028 Atomic orbital electron populations 1.80897 1.13515 1.08381 1.11932 1.29245 0.95319 0.92582 0.90414 1.18754 0.81747 0.86450 1.03873 1.43632 1.54750 1.09929 1.06433 1.19743 1.27143 1.14134 0.82308 0.87143 1.25406 0.94834 0.97181 1.00010 1.69817 1.17585 1.35328 1.27625 0.85913 0.79412 0.79301 0.79742 1.19503 1.20926 1.19612 1.16854 0.85674 0.86973 0.83857 1.90676 1.51507 1.17946 1.86817 1.22280 1.03218 1.00382 0.93953 1.22111 0.96737 0.99612 0.90036 1.19097 1.01783 0.94055 0.93486 1.21199 0.96888 0.99654 0.90601 1.20325 1.04283 0.92185 0.99606 1.19147 0.96477 0.92362 0.84516 1.86093 1.79942 1.24763 1.29591 1.22431 1.01625 0.84162 0.95822 1.20103 0.76886 0.82055 0.90616 1.43659 1.70214 1.14461 1.13466 1.90815 1.50844 1.58575 1.39033 1.21101 1.08392 1.01110 0.92013 1.21239 0.95771 0.93832 0.97983 0.85805 0.89503 0.91287 0.86768 0.84887 0.84664 0.84949 0.88689 0.88671 0.76767 0.75987 0.85494 0.85114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.83 18.54 42.16 0.78 -10.05 16 2 C 0.24 5.20 13.13 -20.76 -0.27 4.92 16 3 C 0.22 4.18 4.79 -6.83 -0.03 4.15 16 4 N -0.43 -9.89 2.59 -121.13 -0.31 -10.20 16 5 C -0.31 -7.71 9.26 -15.04 -0.14 -7.85 16 6 H 0.11 2.94 7.43 -52.49 -0.39 2.55 16 7 C 0.03 0.74 4.83 -17.44 -0.08 0.66 16 8 N -0.87 -21.28 9.59 55.50 0.53 -20.75 16 9 Si 0.93 19.02 29.60 -169.99 -5.03 13.98 16 10 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 11 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 12 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 13 C 0.47 10.82 7.34 -14.90 -0.11 10.71 16 14 O -0.58 -15.42 15.78 5.12 0.08 -15.34 16 15 C -0.18 -3.19 8.30 -39.33 -0.33 -3.52 16 16 C -0.06 -1.03 9.41 -37.16 -0.35 -1.38 16 17 C -0.08 -1.15 5.87 -105.05 -0.62 -1.77 16 18 C -0.07 -0.79 9.79 -39.13 -0.38 -1.17 16 19 C -0.15 -1.71 9.97 -39.50 -0.39 -2.10 16 20 C 0.12 1.40 6.70 -39.00 -0.26 1.14 16 21 O -0.29 -3.37 9.66 -38.88 -0.38 -3.75 16 22 C 0.04 0.28 5.21 36.01 0.19 0.46 16 23 C 0.52 4.32 8.18 -10.98 -0.09 4.23 16 24 N -0.85 -3.02 8.87 31.22 0.28 -2.75 16 25 O -0.52 -7.07 17.34 -14.35 -0.25 -7.32 16 26 C -0.21 -2.19 9.01 -39.50 -0.36 -2.55 16 27 C -0.07 -0.86 9.40 -39.13 -0.37 -1.23 16 28 H 0.12 2.37 6.63 -51.93 -0.34 2.03 16 29 H 0.09 1.24 6.45 -51.93 -0.33 0.90 16 30 H 0.28 6.58 8.31 -40.82 -0.34 6.24 16 31 H 0.11 1.74 4.09 -52.49 -0.21 1.53 16 32 H 0.13 2.27 7.45 -52.49 -0.39 1.87 16 33 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 35 H 0.10 0.48 7.64 -51.92 -0.40 0.08 16 36 H 0.10 0.44 7.66 -51.93 -0.40 0.05 16 37 H 0.40 0.10 8.83 -40.82 -0.36 -0.26 16 38 H 0.41 1.15 8.93 -40.82 -0.36 0.79 16 39 H 0.13 0.94 6.27 -52.49 -0.33 0.61 16 40 H 0.13 1.47 6.16 -52.49 -0.32 1.15 16 LS Contribution 356.43 15.07 5.37 5.37 Total: -1.00 -35.93 356.43 -6.35 -42.28 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -3.83 Total: 3.82 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -3.60 Total: 4.70 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 1.28 Total: -43.74 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.54 Total: -26.41 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.93 -6.35 -42.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491368272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.297 kcal (2) G-P(sol) polarization free energy of solvation -35.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds