Wall clock time and date at job start Tue Mar 31 2020 05:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47113 * 148.38505 * 3 2 1 5 5 C 1.36938 * 119.99788 * 86.19903 * 4 3 2 6 6 H 1.08007 * 119.99766 * 160.91019 * 5 4 3 7 7 C 1.38807 * 120.00371 * 340.91239 * 5 4 3 8 8 N 1.31617 * 119.99963 * 7.59476 * 7 5 4 9 9 Si 1.86803 * 120.00358 * 187.59054 * 7 5 4 10 10 H 1.48501 * 109.46992 * 59.99842 * 9 7 5 11 11 H 1.48497 * 109.47580 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.47077 * 300.00271 * 9 7 5 13 13 S 1.65600 * 120.00171 * 266.20495 * 4 3 2 14 14 O 1.42100 * 104.27781 * 206.06976 * 13 4 3 15 15 O 1.42100 * 104.27408 * 333.92677 * 13 4 3 16 16 C 1.81400 * 104.45162 * 89.99650 * 13 4 3 17 17 C 1.52997 * 109.47020 * 176.00716 * 16 13 4 18 18 C 1.50699 * 110.01814 * 303.70036 * 17 16 13 19 19 O 1.20820 * 120.00171 * 124.90757 * 18 17 16 20 20 O 1.34229 * 119.99675 * 304.90404 * 18 17 16 21 21 C 1.45198 * 116.99703 * 180.02562 * 20 18 17 22 22 C 1.54266 * 110.02899 * 182.30775 * 17 16 13 23 23 C 1.54965 * 104.16041 * 217.13797 * 22 17 16 24 24 C 1.54897 * 102.77846 * 37.88535 * 23 22 17 25 25 C 1.53874 * 110.03240 * 65.09046 * 17 16 13 26 26 H 4.40645 * 5.51430 * 179.97438 * 4 1 2 27 27 H 1.08995 * 109.47507 * 28.38073 * 3 2 1 28 28 H 1.09000 * 109.47078 * 268.38047 * 3 2 1 29 29 H 0.97005 * 120.00322 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.47048 * 296.00897 * 16 13 4 31 31 H 1.09003 * 109.46739 * 56.00386 * 16 13 4 32 32 H 1.08998 * 109.47402 * 60.00039 * 21 20 18 33 33 H 1.09000 * 109.46974 * 180.02562 * 21 20 18 34 34 H 1.09004 * 109.47333 * 299.99353 * 21 20 18 35 35 H 1.09000 * 110.49113 * 335.78094 * 22 17 16 36 36 H 1.08996 * 110.48956 * 98.42895 * 22 17 16 37 37 H 1.09004 * 110.72102 * 279.57544 * 23 22 17 38 38 H 1.08995 * 110.77192 * 156.22527 * 23 22 17 39 39 H 1.08995 * 110.48806 * 203.40924 * 24 23 22 40 40 H 1.08999 * 110.47993 * 80.76369 * 24 23 22 41 41 H 1.08995 * 110.03204 * 238.56557 * 25 17 16 42 42 H 1.09004 * 110.03391 * 0.02562 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1771 -0.7240 5 6 3.2874 2.3695 -0.0684 6 1 3.9184 3.1391 -0.4881 7 6 2.6322 2.5891 1.1354 8 7 1.9855 1.6042 1.7219 9 14 2.6683 4.2825 1.9232 10 1 2.0599 5.2720 0.9979 11 1 1.8996 4.2541 3.1934 12 1 4.0747 4.6676 2.2047 13 16 3.4994 1.0650 -2.3353 14 8 4.4641 2.0865 -2.5477 15 8 3.8282 -0.3042 -2.5255 16 6 1.9466 1.4701 -3.1810 17 6 2.1813 1.4977 -4.6927 18 6 3.2816 2.4720 -5.0262 19 8 4.2409 2.1052 -5.6626 20 8 3.1958 3.7472 -4.6162 21 6 4.2918 4.6298 -4.9740 22 6 0.8821 1.8978 -5.4219 23 6 0.8870 1.0324 -6.7074 24 6 1.4662 -0.3156 -6.2107 25 6 2.5529 0.0912 -5.1941 26 1 -1.0502 -0.0004 0.0000 27 1 3.0098 -0.9033 -0.4884 28 1 3.0093 0.0299 1.0273 29 1 1.5272 1.7577 2.5630 30 1 1.1961 0.7162 -2.9436 31 1 1.5968 2.4479 -2.8497 32 1 4.3812 4.6765 -6.0593 33 1 4.0973 5.6280 -4.5819 34 1 5.2199 4.2474 -4.5491 35 1 0.0124 1.6637 -4.8080 36 1 0.8975 2.9579 -5.6748 37 1 1.5325 1.4736 -7.4669 38 1 -0.1256 0.9007 -7.0886 39 1 1.9072 -0.8698 -7.0392 40 1 0.6910 -0.9076 -5.7241 41 1 3.5286 0.1135 -5.6794 42 1 2.5655 -0.6112 -4.3606 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491694878.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:58 Heat of formation + Delta-G solvation = -87.482596 kcal Electronic energy + Delta-G solvation = -28418.099042 eV Core-core repulsion = 24492.937414 eV Total energy + Delta-G solvation = -3925.161628 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 3.03 seconds Orbital eigenvalues (eV) -40.60541 -37.85708 -36.39547 -35.95972 -35.81911 -34.61801 -32.02434 -31.58763 -31.21261 -28.74461 -27.38231 -26.64555 -25.35083 -23.78701 -22.55477 -20.77708 -19.19630 -18.61439 -17.94351 -17.01627 -16.88492 -16.69893 -16.54111 -16.03139 -15.12688 -15.04066 -14.73234 -14.55051 -14.24113 -13.56056 -13.36872 -13.32385 -13.11499 -12.78902 -12.51943 -12.39042 -11.73762 -11.60885 -11.53404 -11.43712 -11.35473 -11.18175 -11.07143 -11.00385 -10.89457 -10.78638 -10.68819 -10.48703 -10.42559 -10.38805 -10.30696 -9.94247 -9.85506 -9.50111 -9.23805 -8.84581 -8.29789 -6.58013 -4.09843 1.42836 2.48740 3.00936 3.09289 3.11249 3.13701 3.59284 3.94888 4.08474 4.31440 4.48605 4.60708 4.72769 4.77779 5.05318 5.13704 5.25122 5.37901 5.41977 5.47259 5.51484 5.55050 5.55619 5.66318 5.72168 5.88161 5.89667 5.92614 6.07658 6.13355 6.20043 6.33016 6.38672 6.40525 6.53067 6.75658 6.79649 6.99068 7.15151 7.34947 8.04976 8.18390 8.53126 8.80115 8.98091 10.29203 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.005765 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.531874 B = 4855.670321 C = 5696.232344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.103 4.103 3 C 0.235 3.765 4 N -0.803 5.803 5 C -0.248 4.248 6 H 0.121 0.879 7 C 0.033 3.967 8 N -0.826 5.826 9 Si 0.925 3.075 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.267 1.267 13 S 2.474 3.526 14 O -0.973 6.973 15 O -0.991 6.991 16 C -0.654 4.654 17 C -0.033 4.033 18 C 0.466 3.534 19 O -0.503 6.503 20 O -0.342 6.342 21 C 0.037 3.963 22 C -0.105 4.105 23 C -0.129 4.129 24 C -0.116 4.116 25 C -0.146 4.146 26 H 0.197 0.803 27 H 0.076 0.924 28 H 0.134 0.866 29 H 0.277 0.723 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.446 1.379 -7.896 9.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 C -0.106 4.106 3 C 0.110 3.890 4 N -0.625 5.625 5 C -0.394 4.394 6 H 0.139 0.861 7 C -0.178 4.178 8 N -0.466 5.466 9 Si 0.750 3.250 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.192 1.192 13 S 2.572 3.428 14 O -0.962 6.962 15 O -0.980 6.980 16 C -0.772 4.772 17 C -0.035 4.035 18 C 0.308 3.692 19 O -0.390 6.390 20 O -0.257 6.257 21 C -0.057 4.057 22 C -0.143 4.143 23 C -0.167 4.167 24 C -0.154 4.154 25 C -0.183 4.183 26 H 0.214 0.786 27 H 0.094 0.906 28 H 0.151 0.849 29 H 0.089 0.911 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.373 0.941 -8.574 9.262 hybrid contribution -1.078 1.264 0.435 1.717 sum -4.451 2.205 -8.139 9.535 Atomic orbital electron populations 1.24266 0.95358 1.04829 1.05735 1.23605 0.94699 0.96346 0.95922 1.18521 0.83566 0.86277 1.00653 1.54143 1.73409 1.14838 1.20124 1.19976 1.22527 0.94412 1.02471 0.86130 1.25681 0.94859 0.99284 0.97978 1.70016 1.29318 1.30348 1.16966 0.86001 0.79122 0.81503 0.78402 1.19297 1.20517 1.19221 1.13736 0.80473 0.74084 0.74498 1.93375 1.58888 1.59160 1.84823 1.93348 1.84526 1.34778 1.85384 1.31366 1.31422 1.11904 1.02523 1.20745 0.93571 0.93379 0.95786 1.23544 0.86894 0.82669 0.76074 1.90585 1.32731 1.78221 1.37512 1.86450 1.46793 1.20896 1.71602 1.23245 0.89717 0.92553 1.00146 1.22487 0.95530 1.00215 0.96085 1.22593 1.01004 0.95940 0.97121 1.22294 0.97806 0.97048 0.98247 1.22729 1.01210 0.93258 1.01086 0.78550 0.90610 0.84879 0.91113 0.85954 0.85647 0.92679 0.88354 0.90978 0.89601 0.90843 0.91539 0.91017 0.91211 0.91146 0.88953 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.56 19.25 29.55 0.57 -4.99 16 2 C -0.10 -2.23 11.21 -37.12 -0.42 -2.64 16 3 C 0.24 5.27 5.43 -6.83 -0.04 5.23 16 4 N -0.80 -19.02 2.81 -62.78 -0.18 -19.19 16 5 C -0.25 -6.02 9.46 -15.06 -0.14 -6.16 16 6 H 0.12 2.94 7.04 -52.48 -0.37 2.57 16 7 C 0.03 0.76 5.39 -17.43 -0.09 0.67 16 8 N -0.83 -19.17 8.17 55.49 0.45 -18.71 16 9 Si 0.92 18.23 29.56 -169.99 -5.02 13.21 16 10 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 11 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 12 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 13 S 2.47 57.63 4.78 -107.50 -0.51 57.12 16 14 O -0.97 -24.86 14.96 -59.07 -0.88 -25.74 16 15 O -0.99 -24.27 14.67 -57.54 -0.84 -25.11 16 16 C -0.65 -12.73 4.75 37.16 0.18 -12.56 16 17 C -0.03 -0.59 0.63 -154.54 -0.10 -0.68 16 18 C 0.47 9.31 4.37 36.01 0.16 9.46 16 19 O -0.50 -10.87 14.97 -18.75 -0.28 -11.15 16 20 O -0.34 -6.44 10.14 -40.49 -0.41 -6.85 16 21 C 0.04 0.57 10.56 101.05 1.07 1.64 16 22 C -0.11 -1.50 5.90 -25.03 -0.15 -1.64 16 23 C -0.13 -1.59 6.91 -24.69 -0.17 -1.76 16 24 C -0.12 -1.55 6.83 -25.07 -0.17 -1.72 16 25 C -0.15 -2.54 5.48 -25.61 -0.14 -2.68 16 26 H 0.20 3.12 7.80 -54.08 -0.42 2.70 16 27 H 0.08 1.61 6.84 -51.93 -0.35 1.26 16 28 H 0.13 3.05 6.28 -51.93 -0.33 2.73 16 29 H 0.28 6.14 8.31 -40.82 -0.34 5.80 16 30 H 0.12 2.21 8.14 -51.92 -0.42 1.79 16 31 H 0.13 2.41 8.14 -51.92 -0.42 1.99 16 32 H 0.05 0.74 8.13 -51.93 -0.42 0.31 16 33 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 35 H 0.09 1.13 7.85 -51.93 -0.41 0.72 16 36 H 0.07 1.00 7.75 -51.93 -0.40 0.59 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.09 1.73 6.40 -51.93 -0.33 1.39 16 42 H 0.10 1.78 5.94 -51.93 -0.31 1.47 16 LS Contribution 355.03 15.07 5.35 5.35 Total: -1.00 -29.66 355.03 -7.64 -37.31 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -5.86 Total: 11.62 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 0.55 Total: -17.83 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.28 Total: -37.91 kcal Atomic # 8 Polarization: -66.44 SS G_CDS: -2.42 Total: -68.86 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.02 Total: 13.21 kcal Atomic # 16 Polarization: 57.63 SS G_CDS: -0.51 Total: 57.12 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.66 -7.64 -37.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491694878.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.177 kcal (2) G-P(sol) polarization free energy of solvation -29.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.03 seconds