Wall clock time and date at job start Tue Mar 31 2020 07:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47104 * 2 1 4 4 C 1.50705 * 109.46456 * 240.00543 * 2 1 3 5 5 H 1.08002 * 119.99630 * 239.99830 * 4 2 1 6 6 C 1.37879 * 120.00114 * 60.00648 * 4 2 1 7 7 N 1.31506 * 120.00099 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99618 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47377 * 59.99739 * 8 6 4 10 10 H 1.48500 * 109.46792 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47492 * 299.99425 * 8 6 4 12 12 N 1.46496 * 109.47040 * 120.00780 * 2 1 3 13 13 C 1.46499 * 120.00058 * 59.99667 * 12 2 1 14 14 C 1.34772 * 119.99777 * 239.99337 * 12 2 1 15 15 O 1.21697 * 120.00086 * 0.89571 * 14 12 2 16 16 C 1.46682 * 120.00205 * 180.89006 * 14 12 2 17 17 C 1.37867 * 126.23623 * 168.43548 * 16 14 12 18 18 C 1.39834 * 107.08905 * 179.90274 * 17 16 14 19 19 S 1.76196 * 126.07192 * 180.13392 * 18 17 16 20 20 O 1.42110 * 106.39867 * 23.78404 * 19 18 17 21 21 O 1.42102 * 106.40225 * 156.70057 * 19 18 17 22 22 N 1.65600 * 107.22111 * 270.24554 * 19 18 17 23 23 C 1.46497 * 120.00225 * 89.99834 * 22 19 18 24 24 C 1.46503 * 119.99566 * 269.99677 * 22 19 18 25 25 C 1.35454 * 107.86228 * 0.36384 * 18 17 16 26 26 N 1.35536 * 108.87259 * 359.77412 * 25 18 17 27 27 H 0.96999 * 125.68114 * 180.02562 * 26 25 18 28 28 H 1.08997 * 109.47136 * 59.99387 * 1 2 3 29 29 H 1.08998 * 109.47455 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46840 * 299.99593 * 1 2 3 31 31 H 0.96997 * 119.99974 * 180.02562 * 7 6 4 32 32 H 1.08993 * 109.46944 * 263.44217 * 13 12 2 33 33 H 1.08997 * 109.46990 * 23.44754 * 13 12 2 34 34 H 1.09000 * 109.46737 * 143.44517 * 13 12 2 35 35 H 1.08002 * 126.45469 * 0.04007 * 17 16 14 36 36 H 1.08996 * 109.47162 * 90.00193 * 23 22 19 37 37 H 1.09003 * 109.47102 * 210.00090 * 23 22 19 38 38 H 1.09002 * 109.47213 * 330.00081 * 23 22 19 39 39 H 1.08993 * 109.47697 * 0.02562 * 24 22 19 40 40 H 1.09008 * 109.46665 * 119.99884 * 24 22 19 41 41 H 1.08996 * 109.46695 * 239.99614 * 24 22 19 42 42 H 1.08003 * 125.56431 * 179.79500 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6531 -1.5885 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9429 0.8300 -2.6034 8 14 2.3223 -1.1192 -4.0081 9 1 1.8277 -2.5195 -4.0084 10 1 1.8267 -0.4194 -5.2205 11 1 3.8072 -1.1188 -4.0080 12 7 2.0183 -0.6908 1.1960 13 6 1.6644 -2.0933 1.4277 14 6 2.7933 -0.0359 2.0832 15 8 3.0739 1.1338 1.8990 16 6 3.2983 -0.7330 3.2708 17 6 4.2675 -0.2716 4.1360 18 6 4.4368 -1.2485 5.1221 19 16 5.5544 -1.1672 6.4819 20 8 5.8096 0.2121 6.7096 21 8 5.0366 -2.0368 7.4794 22 7 6.9861 -1.8311 5.9801 23 6 8.0117 -0.9833 5.3674 24 6 7.2269 -3.2663 6.1489 25 6 3.5927 -2.2706 4.8437 26 7 2.8952 -1.9698 3.7211 27 1 2.2236 -2.5322 3.3046 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.7083 1.1613 -3.4843 32 1 0.8046 -2.1455 2.0956 33 1 1.4161 -2.5670 0.4780 34 1 2.5092 -2.6110 1.8820 35 1 4.7949 0.6683 4.0666 36 1 8.6732 -0.5958 6.1422 37 1 8.5913 -1.5711 4.6555 38 1 7.5339 -0.1523 4.8485 39 1 6.3582 -3.7278 6.6183 40 1 7.3983 -3.7231 5.1741 41 1 8.1034 -3.4158 6.7794 42 1 3.4916 -3.1771 5.4219 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517769925.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:03 Heat of formation + Delta-G solvation = -34.508818 kcal Electronic energy + Delta-G solvation = -26512.462525 eV Core-core repulsion = 22621.890764 eV Total energy + Delta-G solvation = -3890.571762 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = -3.29 seconds Orbital eigenvalues (eV) -41.54225 -38.68558 -37.25813 -36.31216 -35.82584 -35.64538 -33.20586 -31.53336 -30.08803 -28.78889 -28.32656 -26.66293 -25.34702 -24.83903 -23.13261 -22.10279 -20.48271 -19.91490 -18.80267 -17.68540 -17.46192 -16.66431 -16.40418 -16.11364 -15.71956 -15.30697 -15.10500 -14.64627 -14.54835 -14.29426 -13.92826 -13.63673 -13.18125 -13.12320 -12.77400 -12.75123 -12.72381 -12.61532 -12.52962 -12.10365 -11.83226 -11.79228 -11.68147 -11.64704 -11.23552 -11.16685 -10.97731 -10.84342 -10.40507 -10.29461 -9.66901 -9.43463 -9.31719 -9.27963 -8.54845 -8.50108 -7.82983 -6.18713 -4.28126 0.39629 1.51402 1.97591 2.90223 3.05787 3.19442 3.25876 3.26426 3.61596 3.78318 3.80484 4.24535 4.29735 4.57409 4.72446 4.83095 5.02988 5.11328 5.13356 5.13541 5.20398 5.35826 5.48797 5.48982 5.55498 5.59962 5.71592 5.79386 5.97383 6.28828 6.35416 6.57590 6.63104 6.69955 6.90643 7.10597 7.22940 7.37083 7.56981 7.86907 8.03712 8.27996 8.65278 8.81382 9.38670 10.86651 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.021533 B = 0.002929 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.994067 B = 9557.829264 C = 9853.967737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.259 3.741 3 H 0.067 0.933 4 C -0.533 4.533 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.588 5.588 13 C 0.063 3.937 14 C 0.573 3.427 15 O -0.531 6.531 16 C -0.032 4.032 17 C -0.038 4.038 18 C -0.756 4.756 19 S 2.722 3.278 20 O -0.956 6.956 21 O -0.966 6.966 22 N -1.007 6.007 23 C 0.093 3.907 24 C 0.087 3.913 25 C 0.125 3.875 26 N -0.529 5.529 27 H 0.428 0.572 28 H 0.096 0.904 29 H 0.029 0.971 30 H 0.012 0.988 31 H 0.266 0.734 32 H 0.047 0.953 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.161 0.839 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.552 -11.478 15.184 20.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.159 3.841 3 H 0.085 0.915 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.202 1.202 12 N -0.319 5.319 13 C -0.081 4.081 14 C 0.360 3.640 15 O -0.408 6.408 16 C -0.145 4.145 17 C -0.063 4.063 18 C -0.851 4.851 19 S 2.812 3.188 20 O -0.946 6.946 21 O -0.957 6.957 22 N -0.846 5.846 23 C -0.052 4.052 24 C -0.059 4.059 25 C -0.019 4.019 26 N -0.131 5.131 27 H 0.276 0.724 28 H 0.114 0.886 29 H 0.048 0.952 30 H 0.031 0.969 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.116 0.884 34 H 0.072 0.928 35 H 0.178 0.822 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 8.278 -10.442 15.531 20.464 hybrid contribution -0.256 -1.149 -1.838 2.183 sum 8.021 -11.592 13.693 19.652 Atomic orbital electron populations 1.22108 0.97919 0.99434 1.01106 1.19040 0.91019 0.94647 0.79368 0.91482 1.21235 1.32368 1.13276 0.90228 0.92306 1.24889 0.94790 0.94930 0.99008 1.69856 1.35883 1.22386 1.24120 0.86521 0.79289 0.79479 0.81884 1.20250 1.21042 1.20170 1.48211 1.48804 1.11035 1.23870 1.21974 0.98017 0.84377 1.03755 1.17045 0.79490 0.86257 0.81233 1.90825 1.58839 1.15266 1.75849 1.21126 1.04611 0.87849 1.00915 1.20846 0.96456 0.98117 0.90863 1.30952 1.24015 1.04952 1.25154 1.00991 0.71827 0.72998 0.73028 1.93573 1.84468 1.32231 1.84305 1.93539 1.79243 1.67634 1.55256 1.57357 1.32183 1.16830 1.78235 1.21483 0.91434 0.94238 0.98062 1.21551 1.03156 0.79277 1.01905 1.21823 0.92700 0.98802 0.88592 1.43691 1.31990 1.16301 1.21151 0.72418 0.88555 0.95186 0.96856 0.92425 0.93470 0.88370 0.92762 0.82183 0.92299 0.90962 0.90544 0.89685 0.92139 0.91801 0.79753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.97 37.16 0.33 -3.05 16 2 C 0.26 6.37 2.63 -69.08 -0.18 6.19 16 3 H 0.07 1.93 6.90 -51.93 -0.36 1.57 16 4 C -0.53 -13.80 7.95 -34.44 -0.27 -14.08 16 5 H 0.06 1.49 7.45 -52.49 -0.39 1.09 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.32 11.32 55.43 0.63 -23.69 16 8 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 9 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.59 -12.01 2.75 -176.81 -0.49 -12.49 16 13 C 0.06 0.94 7.82 59.85 0.47 1.41 16 14 C 0.57 11.97 7.64 -12.85 -0.10 11.87 16 15 O -0.53 -13.16 16.23 5.19 0.08 -13.08 16 16 C -0.03 -0.54 6.64 -81.98 -0.54 -1.08 16 17 C -0.04 -0.59 10.47 -39.12 -0.41 -1.00 16 18 C -0.76 -9.61 6.17 -39.98 -0.25 -9.85 16 19 S 2.72 32.63 5.78 -107.50 -0.62 32.00 16 20 O -0.96 -14.46 16.95 -57.17 -0.97 -15.43 16 21 O -0.97 -12.74 16.41 -57.17 -0.94 -13.67 16 22 N -1.01 -9.22 3.58 -129.21 -0.46 -9.69 16 23 C 0.09 0.75 10.33 59.85 0.62 1.37 16 24 C 0.09 0.57 10.67 59.85 0.64 1.21 16 25 C 0.13 1.33 11.64 -16.91 -0.20 1.13 16 26 N -0.53 -6.37 5.04 -9.39 -0.05 -6.42 16 27 H 0.43 4.08 4.97 -40.82 -0.20 3.88 16 28 H 0.10 2.44 6.07 -51.93 -0.32 2.13 16 29 H 0.03 0.62 7.67 -51.93 -0.40 0.22 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 32 H 0.05 0.57 7.71 -51.93 -0.40 0.17 16 33 H 0.10 1.55 7.13 -51.93 -0.37 1.18 16 34 H 0.05 0.66 5.21 -51.93 -0.27 0.39 16 35 H 0.16 2.50 8.06 -52.49 -0.42 2.07 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 38 H 0.08 0.66 7.79 -51.93 -0.40 0.26 16 39 H 0.08 0.54 6.91 -51.93 -0.36 0.18 16 40 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.19 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 358.02 15.07 5.40 5.40 Total: -1.00 -35.32 358.02 -7.99 -43.31 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.56 Total: 2.67 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 0.01 Total: -4.21 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -0.37 Total: -52.29 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -1.82 Total: -42.18 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 32.63 SS G_CDS: -0.62 Total: 32.00 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.32 -7.99 -43.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517769925.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.803 kcal (2) G-P(sol) polarization free energy of solvation -35.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -3.29 seconds