Wall clock time and date at job start Tue Mar 31 2020 07:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47372 * 2 1 4 4 C 1.50693 * 109.47427 * 120.00902 * 2 1 3 5 5 H 1.07997 * 120.00294 * 119.99397 * 4 2 1 6 6 C 1.37877 * 119.99817 * 300.00091 * 4 2 1 7 7 N 1.31513 * 120.00190 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00052 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47049 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47246 * 119.99883 * 8 6 4 11 11 H 1.48503 * 109.46933 * 239.99664 * 8 6 4 12 12 N 1.46506 * 109.46683 * 240.00733 * 2 1 3 13 13 C 1.46498 * 119.99977 * 299.99467 * 12 2 1 14 14 C 1.34778 * 119.99781 * 120.00431 * 12 2 1 15 15 O 1.21691 * 120.00493 * 6.22827 * 14 12 2 16 16 C 1.46678 * 119.99663 * 186.23606 * 14 12 2 17 17 C 1.37876 * 126.23238 * 187.94023 * 16 14 12 18 18 C 1.39837 * 107.08633 * 179.97438 * 17 16 14 19 19 S 1.76193 * 126.06791 * 180.02562 * 18 17 16 20 20 O 1.42096 * 106.40469 * 203.54241 * 19 18 17 21 21 O 1.42102 * 106.40176 * 336.46120 * 19 18 17 22 22 N 1.65603 * 107.21796 * 90.00114 * 19 18 17 23 23 C 1.46499 * 119.99988 * 90.00263 * 22 19 18 24 24 C 1.46504 * 119.99772 * 269.99804 * 22 19 18 25 25 C 1.35452 * 107.86258 * 359.97438 * 18 17 16 26 26 N 1.35539 * 108.87500 * 359.76321 * 25 18 17 27 27 H 0.96988 * 125.67603 * 180.26381 * 26 25 18 28 28 H 1.08997 * 109.47348 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46835 * 299.99264 * 1 2 3 30 30 H 1.08998 * 109.47075 * 59.99391 * 1 2 3 31 31 H 0.97003 * 120.00436 * 180.02562 * 7 6 4 32 32 H 1.09007 * 109.46741 * 95.80582 * 13 12 2 33 33 H 1.09000 * 109.47259 * 215.80337 * 13 12 2 34 34 H 1.09000 * 109.47347 * 335.81055 * 13 12 2 35 35 H 1.08001 * 126.45294 * 359.97438 * 17 16 14 36 36 H 1.08992 * 109.47347 * 90.00213 * 23 22 19 37 37 H 1.08999 * 109.46632 * 210.00098 * 23 22 19 38 38 H 1.08996 * 109.47008 * 329.99726 * 23 22 19 39 39 H 1.08997 * 109.46938 * 90.00143 * 24 22 19 40 40 H 1.09002 * 109.46899 * 210.00177 * 24 22 19 41 41 H 1.08998 * 109.47528 * 329.99870 * 24 22 19 42 42 H 1.08003 * 125.56099 * 180.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6532 -1.5887 1.1311 6 6 1.6993 -0.2397 2.4826 7 7 0.9436 0.8298 2.6035 8 14 2.3215 -1.1209 4.0077 9 1 3.1456 -2.2881 3.6034 10 1 3.1467 -0.1880 4.8164 11 1 1.1661 -1.5872 4.8158 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4283 14 6 2.7932 -0.0354 -2.0834 15 8 3.1810 1.0914 -1.8371 16 6 3.1689 -0.6807 -3.3459 17 6 4.0716 -0.1991 -4.2702 18 6 4.1243 -1.1270 -5.3150 19 16 5.1228 -1.0048 -6.7615 20 8 4.4908 -1.8015 -7.7539 21 8 5.4061 0.3765 -6.9380 22 7 6.5681 -1.7390 -6.4229 23 6 6.7428 -3.1692 -6.6874 24 6 7.6720 -0.9580 -5.8591 25 6 3.2722 -2.1370 -5.0171 26 7 2.6896 -1.8806 -3.8205 27 1 2.0412 -2.4471 -3.3742 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 0.7096 1.1614 3.4845 32 1 0.7962 -2.1448 -2.0854 33 1 2.5045 -2.6074 -1.8950 34 1 1.4290 -2.5705 -0.4771 35 1 4.6323 0.7213 -4.2003 36 1 7.1179 -3.3081 -7.7012 37 1 7.4558 -3.5858 -5.9759 38 1 5.7846 -3.6779 -6.5816 39 1 7.6139 -0.9802 -4.7709 40 1 8.6214 -1.3859 -6.1811 41 1 7.6020 0.0730 -6.2057 42 1 3.0903 -3.0069 -5.6308 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517769926.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:16 Heat of formation + Delta-G solvation = -37.090890 kcal Electronic energy + Delta-G solvation = -26496.902943 eV Core-core repulsion = 22606.219214 eV Total energy + Delta-G solvation = -3890.683729 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.52606 -38.68315 -37.25066 -36.31715 -35.82725 -35.64135 -33.18964 -31.51103 -30.08251 -28.80001 -28.32216 -26.64974 -25.34714 -24.85289 -23.13379 -22.08531 -20.47640 -19.89605 -18.79988 -17.68853 -17.45692 -16.67358 -16.36832 -16.11789 -15.72794 -15.28370 -15.11008 -14.63526 -14.52266 -14.29244 -13.93279 -13.62440 -13.24792 -13.09986 -12.83073 -12.75032 -12.71953 -12.62576 -12.49416 -12.09437 -11.85282 -11.79246 -11.68993 -11.65319 -11.25017 -11.16726 -10.96943 -10.84520 -10.38690 -10.29866 -9.65677 -9.42330 -9.30277 -9.27051 -8.55051 -8.50136 -7.82381 -6.18365 -4.27289 0.39899 1.50792 1.97545 2.90458 3.05742 3.18457 3.26864 3.28811 3.63712 3.77560 3.79747 4.24026 4.30169 4.57298 4.72225 4.84786 5.00370 5.11014 5.12952 5.14790 5.22209 5.38525 5.46566 5.47281 5.55317 5.61792 5.71650 5.79508 5.98337 6.28806 6.35310 6.57556 6.62444 6.69541 6.90061 7.10951 7.23444 7.37280 7.57634 7.87198 8.04325 8.28281 8.66296 8.82014 9.39520 10.87092 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.022851 B = 0.002869 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.014424 B = 9755.762238 C = 9983.697359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.067 0.933 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.900 3.100 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.590 5.590 13 C 0.066 3.934 14 C 0.574 3.426 15 O -0.529 6.529 16 C -0.034 4.034 17 C -0.036 4.036 18 C -0.756 4.756 19 S 2.723 3.277 20 O -0.965 6.965 21 O -0.957 6.957 22 N -1.008 6.008 23 C 0.095 3.905 24 C 0.083 3.917 25 C 0.125 3.875 26 N -0.528 5.528 27 H 0.427 0.573 28 H 0.029 0.971 29 H 0.096 0.904 30 H 0.012 0.988 31 H 0.264 0.736 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.161 0.839 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.832 -11.260 -16.350 21.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.159 3.841 3 H 0.085 0.915 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.321 5.321 13 C -0.079 4.079 14 C 0.360 3.640 15 O -0.406 6.406 16 C -0.146 4.146 17 C -0.061 4.061 18 C -0.851 4.851 19 S 2.813 3.187 20 O -0.956 6.956 21 O -0.947 6.947 22 N -0.847 5.847 23 C -0.051 4.051 24 C -0.062 4.062 25 C -0.019 4.019 26 N -0.130 5.130 27 H 0.274 0.726 28 H 0.048 0.952 29 H 0.115 0.885 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.179 0.821 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 7.583 -10.211 -16.623 20.930 hybrid contribution -0.235 -1.184 1.857 2.215 sum 7.348 -11.395 -14.766 20.047 Atomic orbital electron populations 1.22115 0.97919 0.99453 1.01097 1.19043 0.90913 0.94639 0.79521 0.91525 1.21304 1.32127 1.13200 0.90204 0.92191 1.24897 0.94815 0.94945 0.99038 1.69878 1.36106 1.22441 1.23872 0.86411 0.78604 0.79559 0.82629 1.19860 1.20762 1.20887 1.48204 1.48967 1.10985 1.23965 1.21907 0.97922 0.84348 1.03675 1.17045 0.79568 0.85717 0.81667 1.90825 1.54464 1.18402 1.76915 1.21143 1.04979 0.89380 0.99122 1.20856 0.97041 0.98225 0.90021 1.30947 1.23160 1.06428 1.24548 1.00939 0.71821 0.72927 0.73024 1.93547 1.75360 1.70944 1.55728 1.93559 1.84066 1.31744 1.85339 1.57352 1.28727 1.18428 1.80196 1.21455 1.02818 0.79368 1.01412 1.21620 0.89389 0.96469 0.98762 1.21817 0.93946 0.98796 0.87347 1.43555 1.34127 1.18420 1.16858 0.72612 0.95166 0.88522 0.96902 0.92563 0.93690 0.92811 0.88359 0.82143 0.92343 0.90997 0.91083 0.92368 0.90744 0.89693 0.79763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.97 37.16 0.33 -3.04 16 2 C 0.26 6.37 2.62 -69.08 -0.18 6.19 16 3 H 0.07 1.92 6.91 -51.93 -0.36 1.56 16 4 C -0.53 -13.79 7.95 -34.44 -0.27 -14.06 16 5 H 0.06 1.53 7.43 -52.49 -0.39 1.14 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.36 11.32 55.43 0.63 -23.74 16 8 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 9 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.59 -12.06 2.75 -176.81 -0.49 -12.54 16 13 C 0.07 0.98 7.73 59.85 0.46 1.44 16 14 C 0.57 11.99 7.63 -12.85 -0.10 11.89 16 15 O -0.53 -13.15 16.24 5.20 0.08 -13.07 16 16 C -0.03 -0.56 6.63 -81.98 -0.54 -1.10 16 17 C -0.04 -0.56 10.45 -39.12 -0.41 -0.97 16 18 C -0.76 -9.61 6.17 -39.98 -0.25 -9.85 16 19 S 2.72 32.55 5.79 -107.50 -0.62 31.93 16 20 O -0.97 -12.81 16.92 -57.17 -0.97 -13.77 16 21 O -0.96 -14.35 16.47 -57.17 -0.94 -15.30 16 22 N -1.01 -9.12 3.58 -129.21 -0.46 -9.59 16 23 C 0.10 0.62 10.29 59.85 0.62 1.24 16 24 C 0.08 0.65 10.66 59.85 0.64 1.29 16 25 C 0.13 1.33 11.64 -16.91 -0.20 1.13 16 26 N -0.53 -6.37 5.07 -9.39 -0.05 -6.42 16 27 H 0.43 4.10 4.93 -40.82 -0.20 3.90 16 28 H 0.03 0.62 7.67 -51.93 -0.40 0.23 16 29 H 0.10 2.45 6.07 -51.93 -0.32 2.13 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.04 0.54 7.45 -51.93 -0.39 0.16 16 33 H 0.05 0.66 5.68 -51.93 -0.29 0.36 16 34 H 0.10 1.55 7.11 -51.93 -0.37 1.18 16 35 H 0.16 2.51 8.06 -52.49 -0.42 2.08 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 38 H 0.07 0.40 7.79 -51.93 -0.40 0.00 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 41 H 0.08 0.73 7.02 -51.93 -0.36 0.36 16 42 H 0.19 1.20 8.06 -52.48 -0.42 0.77 16 LS Contribution 358.13 15.07 5.40 5.40 Total: -1.00 -35.44 358.13 -8.01 -43.44 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.57 Total: 2.47 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 0.01 Total: -4.20 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -0.37 Total: -52.29 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -1.82 Total: -42.13 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 32.55 SS G_CDS: -0.62 Total: 31.93 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.44 -8.01 -43.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517769926.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.352 kcal (2) G-P(sol) polarization free energy of solvation -35.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds