Wall clock time and date at job start Tue Mar 31 2020 06:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35025 * 119.55803 * 2 1 4 4 C 1.40916 * 119.80935 * 179.97438 * 3 2 1 5 5 O 1.35449 * 120.51501 * 179.97438 * 4 3 2 6 6 C 1.38257 * 118.97863 * 0.02562 * 4 3 2 7 7 C 1.39987 * 119.12051 * 359.74085 * 6 4 3 8 8 O 1.22114 * 119.92737 * 180.26374 * 7 6 4 9 9 N 1.34587 * 120.14117 * 0.53130 * 7 6 4 10 10 C 1.46497 * 119.46716 * 179.73805 * 9 7 6 11 11 C 1.50700 * 109.46949 * 269.72490 * 10 9 7 12 12 O 1.21280 * 120.00036 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00130 * 179.97438 * 11 10 9 14 14 C 1.39472 * 120.00017 * 184.72433 * 13 11 10 15 15 C 1.38594 * 119.58015 * 174.60590 * 14 13 11 16 16 C 1.40809 * 118.79400 * 179.97438 * 15 14 13 17 17 C 1.41542 * 120.99532 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00525 * 151.71951 * 17 16 15 19 19 C 1.40036 * 119.99880 * 331.72263 * 17 16 15 20 20 N 1.30744 * 120.00149 * 350.11615 * 19 17 16 21 21 Si 1.86800 * 120.00014 * 170.11398 * 19 17 16 22 22 H 1.48503 * 109.47191 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47268 * 119.99719 * 21 19 17 24 24 H 1.48495 * 109.47286 * 240.00276 * 21 19 17 25 25 C 1.41173 * 118.01118 * 359.97438 * 16 15 14 26 26 C 1.37596 * 119.01200 * 0.02562 * 25 16 15 27 27 N 1.32088 * 121.10789 * 359.71980 * 26 25 16 28 28 H 1.09005 * 109.46733 * 270.01427 * 1 2 3 29 29 H 1.08993 * 109.47435 * 30.01489 * 1 2 3 30 30 H 1.09006 * 109.47059 * 150.02156 * 1 2 3 31 31 H 1.08002 * 120.09297 * 0.02562 * 3 2 1 32 32 H 0.96696 * 114.00375 * 179.97438 * 5 4 3 33 33 H 1.07996 * 120.43908 * 179.97438 * 6 4 3 34 34 H 1.09007 * 109.47281 * 149.72675 * 10 9 7 35 35 H 1.08999 * 109.47583 * 29.72511 * 10 9 7 36 36 H 0.96996 * 119.99948 * 4.99655 * 13 11 10 37 37 H 1.08002 * 120.60263 * 0.02562 * 15 14 13 38 38 H 0.96996 * 120.00109 * 179.97438 * 20 19 17 39 39 H 1.07995 * 120.49695 * 179.97438 * 25 16 15 40 40 H 1.08004 * 119.44408 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1731 1.1745 0.0000 4 6 3.5823 1.1807 0.0005 5 8 4.2649 2.3506 0.0000 6 6 4.2574 -0.0258 0.0005 7 6 3.5229 -1.2175 0.0055 8 8 4.1041 -2.2914 0.0104 9 7 2.1775 -1.1821 -0.0006 10 6 1.4235 -2.4382 -0.0011 11 6 1.1655 -2.8686 -1.4221 12 8 1.5718 -2.1929 -2.3436 13 7 0.4841 -4.0049 -1.6689 14 6 0.3302 -4.4550 -2.9800 15 6 -0.2734 -5.6800 -3.2164 16 6 -0.4207 -6.1180 -4.5465 17 6 -1.0297 -7.3613 -4.8412 18 1 -1.5452 -7.5011 -5.7799 19 6 -0.9640 -8.4100 -3.9156 20 7 -0.1836 -8.3122 -2.8712 21 14 -1.9914 -9.9488 -4.1730 22 1 -2.7836 -9.8119 -5.4216 23 1 -1.0966 -11.1289 -4.2821 24 1 -2.9102 -10.1291 -3.0205 25 6 0.0571 -5.2801 -5.5772 26 6 0.6428 -4.0803 -5.2444 27 7 0.7575 -3.7035 -3.9836 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8898 -0.5140 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6274 2.1065 0.0004 32 1 5.2261 2.2452 0.0009 33 1 5.3371 -0.0486 0.0005 34 1 0.4732 -2.2918 0.5125 35 1 1.9994 -3.2079 0.5128 36 1 0.0973 -4.5076 -0.9350 37 1 -0.6251 -6.2872 -2.3954 38 1 -0.1384 -9.0385 -2.2298 39 1 -0.0348 -5.5767 -6.6116 40 1 1.0112 -3.4340 -6.0274 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531670948.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:44 Heat of formation + Delta-G solvation = -36.106758 kcal Electronic energy + Delta-G solvation = -27238.522850 eV Core-core repulsion = 23212.437845 eV Total energy + Delta-G solvation = -4026.085005 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.68983 -39.59050 -38.64261 -37.74917 -36.96332 -34.40654 -33.80107 -33.41609 -31.75393 -30.59684 -29.33968 -27.66210 -27.48068 -26.02300 -23.13081 -22.84942 -22.04506 -21.56109 -19.89341 -18.82325 -17.90102 -17.54818 -17.45404 -17.15157 -15.83108 -15.58450 -15.43897 -15.17610 -14.96288 -14.42005 -14.25384 -14.23479 -13.89662 -13.79010 -13.65799 -13.46123 -13.38144 -12.89921 -12.85590 -12.62215 -12.41932 -12.07345 -11.68487 -11.45462 -11.32219 -11.23289 -10.94427 -10.34636 -10.17083 -9.99328 -9.85072 -9.75834 -9.43682 -9.22842 -8.03814 -7.99802 -7.78844 -7.10295 -6.80537 -4.66150 0.73796 1.84492 2.42482 2.43378 2.74845 3.00282 3.05558 3.10860 3.30233 3.36673 3.42663 3.73446 3.83631 4.20355 4.54541 4.66904 4.80858 4.84744 4.88074 4.97478 5.08052 5.12865 5.29423 5.51744 5.57129 5.61724 5.86365 5.90250 5.97684 6.29798 6.50236 6.56773 6.74777 6.89883 7.05657 7.07454 7.12823 7.31175 7.39354 7.67783 7.86921 8.10875 8.13273 8.35991 8.62719 8.70893 8.75672 9.61034 10.07811 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.002665 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.984041 B =10502.789254 C =10734.658769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.210 3.790 3 C -0.250 4.250 4 C 0.243 3.757 5 O -0.468 6.468 6 C -0.366 4.366 7 C 0.541 3.459 8 O -0.550 6.550 9 N -0.483 5.483 10 C 0.065 3.935 11 C 0.486 3.514 12 O -0.465 6.465 13 N -0.653 5.653 14 C 0.334 3.666 15 C -0.234 4.234 16 C 0.143 3.857 17 C -0.456 4.456 18 H 0.082 0.918 19 C 0.075 3.925 20 N -0.795 5.795 21 Si 0.914 3.086 22 H -0.260 1.260 23 H -0.273 1.273 24 H -0.272 1.272 25 C -0.279 4.279 26 C 0.117 3.883 27 N -0.552 5.552 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.152 0.848 32 H 0.406 0.594 33 H 0.149 0.851 34 H 0.119 0.881 35 H 0.130 0.870 36 H 0.409 0.591 37 H 0.130 0.870 38 H 0.281 0.719 39 H 0.103 0.897 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.318 14.019 11.148 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.100 3.900 3 C -0.274 4.274 4 C 0.191 3.809 5 O -0.269 6.269 6 C -0.389 4.389 7 C 0.345 3.655 8 O -0.433 6.433 9 N -0.195 5.195 10 C -0.061 4.061 11 C 0.268 3.732 12 O -0.334 6.334 13 N -0.300 5.300 14 C 0.110 3.890 15 C -0.259 4.259 16 C 0.135 3.865 17 C -0.488 4.488 18 H 0.100 0.900 19 C -0.143 4.143 20 N -0.421 5.421 21 Si 0.739 3.261 22 H -0.184 1.184 23 H -0.199 1.199 24 H -0.197 1.197 25 C -0.302 4.302 26 C -0.037 4.037 27 N -0.271 5.271 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.170 0.830 32 H 0.260 0.740 33 H 0.166 0.834 34 H 0.137 0.863 35 H 0.148 0.852 36 H 0.244 0.756 37 H 0.148 0.852 38 H 0.092 0.908 39 H 0.121 0.879 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.339 14.819 10.914 18.407 hybrid contribution -0.197 -2.062 0.054 2.072 sum 0.142 12.757 10.968 16.824 Atomic orbital electron populations 1.21189 0.87711 1.05717 1.04187 1.20259 0.95108 0.84679 0.89913 1.19650 0.91017 0.97637 1.19094 1.19203 0.91567 0.84252 0.85862 1.84778 1.24990 1.28744 1.88436 1.22135 1.01003 0.90539 1.25228 1.16444 0.79872 0.90995 0.78234 1.90982 1.67590 1.31341 1.53390 1.45081 1.08132 1.05789 1.60452 1.21856 0.99098 0.87801 0.97366 1.20598 0.79851 0.82155 0.90603 1.90834 1.46489 1.51354 1.44713 1.43296 1.54143 1.24926 1.07621 1.18156 0.96484 0.90821 0.83577 1.21592 1.10147 0.94930 0.99255 1.17592 0.87085 0.91677 0.90170 1.19599 1.30808 0.95271 1.03083 0.89971 1.25949 0.93822 1.00568 0.93949 1.69752 1.29333 1.32913 1.10105 0.86158 0.80049 0.80320 0.79607 1.18363 1.19873 1.19685 1.21958 1.10148 0.99060 0.99083 1.21765 0.96021 0.94094 0.91817 1.67190 1.26006 1.34900 0.98995 0.88753 0.88457 0.89911 0.83018 0.74019 0.83378 0.86299 0.85242 0.75602 0.85209 0.90792 0.87855 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 9.05 36.01 0.33 -0.66 16 2 C 0.21 2.34 6.65 -81.93 -0.54 1.79 16 3 C -0.25 -2.63 9.57 -39.71 -0.38 -3.01 16 4 C 0.24 2.72 6.95 -38.56 -0.27 2.45 16 5 O -0.47 -3.95 13.58 -18.04 -0.24 -4.20 16 6 C -0.37 -4.95 9.71 -38.92 -0.38 -5.33 16 7 C 0.54 9.13 7.38 -15.69 -0.12 9.01 16 8 O -0.55 -11.45 16.61 4.81 0.08 -11.37 16 9 N -0.48 -6.81 2.07 -116.68 -0.24 -7.05 16 10 C 0.06 0.85 5.17 -5.20 -0.03 0.82 16 11 C 0.49 8.94 7.30 -10.98 -0.08 8.86 16 12 O -0.47 -10.71 14.69 5.56 0.08 -10.63 16 13 N -0.65 -12.30 5.39 -11.49 -0.06 -12.36 16 14 C 0.33 7.98 7.41 -154.70 -1.15 6.84 16 15 C -0.23 -5.82 8.58 -38.48 -0.33 -6.15 16 16 C 0.14 3.73 5.58 -106.55 -0.59 3.13 16 17 C -0.46 -11.60 9.13 -37.65 -0.34 -11.94 16 18 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 19 C 0.08 1.80 5.30 -17.34 -0.09 1.71 16 20 N -0.79 -19.52 10.84 55.55 0.60 -18.92 16 21 Si 0.91 17.81 29.57 -169.99 -5.03 12.78 16 22 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 25 C -0.28 -6.82 9.90 -38.70 -0.38 -7.20 16 26 C 0.12 2.83 11.15 -17.68 -0.20 2.63 16 27 N -0.55 -14.07 7.85 -12.52 -0.10 -14.17 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.10 0.60 8.07 -51.93 -0.42 0.18 16 30 H 0.08 0.74 6.12 -51.93 -0.32 0.42 16 31 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.41 1.52 8.74 45.56 0.40 1.91 16 33 H 0.15 1.73 8.00 -52.49 -0.42 1.31 16 34 H 0.12 0.96 6.47 -51.93 -0.34 0.63 16 35 H 0.13 1.68 7.36 -51.93 -0.38 1.30 16 36 H 0.41 6.01 8.70 -40.82 -0.36 5.66 16 37 H 0.13 3.19 6.27 -52.49 -0.33 2.86 16 38 H 0.28 6.25 8.29 -40.82 -0.34 5.91 16 39 H 0.10 2.32 8.06 -52.49 -0.42 1.89 16 40 H 0.12 2.61 8.06 -52.48 -0.42 2.19 16 LS Contribution 348.97 15.07 5.26 5.26 Total: -1.00 -37.72 348.97 -7.61 -45.33 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -3.40 Total: 12.37 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -4.56 Total: 2.95 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: 0.20 Total: -52.50 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.08 Total: -26.19 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -37.72 -7.61 -45.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531670948.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.224 kcal (2) G-P(sol) polarization free energy of solvation -37.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds