Wall clock time and date at job start Tue Mar 31 2020 05:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00332 * 2 1 4 4 H 1.48500 * 109.47360 * 270.00166 * 3 2 1 5 5 H 1.48501 * 109.47012 * 30.00144 * 3 2 1 6 6 H 1.48503 * 109.47189 * 149.99832 * 3 2 1 7 7 C 1.37881 * 119.99465 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99286 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00441 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47001 * 180.02562 * 9 7 2 11 11 S 1.81401 * 109.46754 * 180.02562 * 10 9 7 12 12 O 1.42102 * 110.54591 * 68.37215 * 11 10 9 13 13 O 1.42098 * 110.54261 * 291.61951 * 11 10 9 14 14 N 1.65608 * 104.44690 * 179.97438 * 11 10 9 15 15 C 1.46493 * 119.99916 * 64.72499 * 14 11 10 16 16 C 1.53005 * 109.47062 * 164.99917 * 15 14 11 17 17 H 1.08998 * 109.47070 * 304.99574 * 16 15 14 18 18 O 1.42902 * 109.46825 * 64.99683 * 16 15 14 19 19 C 1.52998 * 109.46989 * 184.99848 * 16 15 14 20 20 O 1.42903 * 109.47062 * 175.00204 * 19 16 15 21 21 C 1.35901 * 117.00400 * 179.97438 * 20 19 16 22 22 C 1.38737 * 120.05047 * 359.72090 * 21 20 19 23 23 C 1.38140 * 119.93948 * 179.74448 * 22 21 20 24 24 C 1.38271 * 120.05900 * 0.51168 * 23 22 21 25 25 C 1.38266 * 120.10811 * 359.76330 * 24 23 22 26 26 C 1.38150 * 120.05508 * 359.97438 * 25 24 23 27 27 H 0.96997 * 120.00035 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47531 * 59.99852 * 9 7 2 29 29 H 1.08997 * 109.46854 * 299.99519 * 9 7 2 30 30 H 1.08996 * 109.47267 * 60.00073 * 10 9 7 31 31 H 1.08997 * 109.46811 * 299.99408 * 10 9 7 32 32 H 0.97000 * 119.99287 * 244.99833 * 14 11 10 33 33 H 1.09002 * 109.47374 * 284.99622 * 15 14 11 34 34 H 1.08994 * 109.47678 * 44.99870 * 15 14 11 35 35 H 0.96704 * 114.00035 * 60.00317 * 18 16 15 36 36 H 1.09004 * 109.47272 * 294.99686 * 19 16 15 37 37 H 1.08997 * 109.47588 * 54.99888 * 19 16 15 38 38 H 1.08001 * 120.03128 * 0.02562 * 22 21 20 39 39 H 1.08003 * 119.97352 * 180.28008 * 23 22 21 40 40 H 1.07997 * 119.94783 * 179.74945 * 24 23 22 41 41 H 1.07996 * 119.97459 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.02648 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 16 1.3381 -5.2331 0.0011 12 8 0.6654 -5.4199 -1.2366 13 8 0.6628 -5.4195 1.2374 14 7 2.5203 -6.3928 0.0018 15 6 3.4217 -6.5191 1.1497 16 6 4.1525 -7.8615 1.0790 17 1 3.4235 -8.6687 1.0080 18 8 5.0000 -7.8823 -0.0714 19 6 4.9990 -8.0483 2.3397 20 8 5.5893 -9.3497 2.3285 21 6 6.3784 -9.6783 3.3850 22 6 6.5851 -8.7648 4.4086 23 6 7.3834 -9.1033 5.4840 24 6 7.9847 -10.3473 5.5357 25 6 7.7849 -11.2573 4.5141 26 6 6.9831 -10.9257 3.4391 27 1 -0.4850 0.8400 0.0004 28 1 0.6246 -2.5572 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 2.8711 -3.6040 0.8922 31 1 2.8724 -3.6048 -0.8877 32 1 2.6183 -6.9858 -0.7595 33 1 4.1494 -5.7079 1.1313 34 1 2.8441 -6.4681 2.0726 35 1 5.6747 -7.1896 -0.0755 36 1 5.7848 -7.2932 2.3649 37 1 4.3663 -7.9438 3.2210 38 1 6.1186 -7.7917 4.3668 39 1 7.5410 -8.3942 6.2832 40 1 8.6117 -10.6085 6.3753 41 1 8.2559 -12.2282 4.5566 42 1 6.8276 -11.6367 2.6412 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533554597.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:27 Heat of formation + Delta-G solvation = -146.134653 kcal Electronic energy + Delta-G solvation = -24988.472547 eV Core-core repulsion = 21060.767575 eV Total energy + Delta-G solvation = -3927.704972 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.52946 -38.60978 -37.23005 -36.62275 -35.50353 -34.52473 -33.93802 -31.56888 -31.20928 -30.92080 -29.67637 -25.93013 -25.64864 -23.23105 -22.48284 -21.97430 -21.60868 -18.98345 -18.70038 -17.56639 -17.48374 -17.00425 -16.55737 -16.28567 -15.90599 -15.65336 -15.44179 -15.10217 -14.86623 -14.59730 -14.48439 -14.07877 -13.76484 -13.49654 -13.27737 -13.22724 -12.78305 -12.53757 -11.96689 -11.81768 -11.79374 -11.64714 -11.59981 -11.53646 -11.38888 -11.12264 -11.08189 -11.00413 -10.49990 -10.45131 -10.42191 -9.87814 -9.58775 -9.37932 -9.09711 -8.56783 -8.54151 -6.16249 -4.22098 0.71575 0.96522 1.08434 2.62149 3.12234 3.23049 3.29446 3.31598 3.42766 3.96984 4.18113 4.25302 4.33808 4.40039 4.48284 4.49971 4.58631 4.66982 4.75771 4.85115 4.92787 5.01842 5.11147 5.17650 5.19061 5.29754 5.50901 5.59645 5.60693 5.63187 5.82832 5.93284 6.03910 6.16824 6.39228 6.42685 6.99958 7.05224 7.25708 7.26687 7.31877 7.76308 8.13090 8.81201 9.42801 10.94709 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015773 B = 0.002259 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.764529 B =12392.564716 C =13551.073547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.057 3.943 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.027 3.973 10 C -0.589 4.589 11 S 2.595 3.405 12 O -0.964 6.964 13 O -0.967 6.967 14 N -1.122 6.122 15 C 0.088 3.912 16 C 0.106 3.894 17 H 0.119 0.881 18 O -0.547 6.547 19 C 0.026 3.974 20 O -0.303 6.303 21 C 0.130 3.870 22 C -0.211 4.211 23 C -0.080 4.080 24 C -0.162 4.162 25 C -0.082 4.082 26 C -0.153 4.153 27 H 0.265 0.735 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.418 0.582 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.377 0.623 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.203 -19.838 8.467 26.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.079 0.921 9 C -0.012 4.012 10 C -0.723 4.723 11 S 2.692 3.308 12 O -0.954 6.954 13 O -0.957 6.957 14 N -0.880 5.880 15 C -0.040 4.040 16 C 0.045 3.955 17 H 0.137 0.863 18 O -0.352 6.352 19 C -0.051 4.051 20 O -0.216 6.216 21 C 0.085 3.915 22 C -0.229 4.229 23 C -0.098 4.098 24 C -0.180 4.180 25 C -0.100 4.100 26 C -0.172 4.172 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.252 0.748 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.225 0.775 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.146 0.854 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 14.641 -20.436 8.303 26.474 hybrid contribution 1.461 1.754 0.089 2.284 sum 16.101 -18.682 8.392 26.052 Atomic orbital electron populations 1.69952 1.06108 1.27242 1.49434 1.25079 0.94992 0.99580 0.94900 0.86460 0.79651 0.82841 0.78251 1.20453 1.21000 1.19812 1.20987 0.93013 0.89768 1.52287 0.92086 1.18968 0.92702 0.90544 0.98956 1.30445 1.13729 1.18104 1.09979 1.05543 0.74601 0.76518 0.74147 1.93565 1.71496 1.85247 1.45109 1.93539 1.71296 1.85000 1.45855 1.55718 1.52293 1.52724 1.27263 1.21785 0.94168 0.97456 0.90594 1.22101 0.91564 0.97975 0.83828 0.86307 1.86662 1.48482 1.57656 1.42395 1.23578 0.97447 0.83829 1.00213 1.86129 1.60678 1.33774 1.41059 1.19082 0.91416 0.94071 0.86960 1.21324 1.04918 1.00434 0.96262 1.20989 0.95232 0.96505 0.97074 1.21087 1.02563 0.94494 0.99846 1.20990 0.96659 0.99383 0.92944 1.20478 1.00794 0.95232 1.00654 0.92494 0.94774 0.94800 0.86456 0.86032 0.74765 0.90939 0.88917 0.77530 0.91055 0.90373 0.85335 0.85725 0.85941 0.85392 0.85164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.52 -14.07 9.11 -34.44 -0.31 -14.38 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 9 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 10 C -0.59 -10.55 6.00 37.16 0.22 -10.33 16 11 S 2.59 43.51 5.46 -107.50 -0.59 42.92 16 12 O -0.96 -19.45 18.08 -57.54 -1.04 -20.49 16 13 O -0.97 -18.96 17.51 -57.54 -1.01 -19.97 16 14 N -1.12 -13.21 5.85 -10.62 -0.06 -13.27 16 15 C 0.09 0.79 5.76 -4.04 -0.02 0.77 16 16 C 0.11 0.88 3.34 -26.73 -0.09 0.79 16 17 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 18 O -0.55 -4.85 13.10 -40.08 -0.53 -5.37 16 19 C 0.03 0.19 4.37 37.16 0.16 0.35 16 20 O -0.30 -3.00 10.10 -24.27 -0.25 -3.25 16 21 C 0.13 1.24 6.69 -39.22 -0.26 0.97 16 22 C -0.21 -1.74 9.04 -39.43 -0.36 -2.10 16 23 C -0.08 -0.59 10.04 -39.61 -0.40 -0.99 16 24 C -0.16 -1.13 10.04 -39.56 -0.40 -1.53 16 25 C -0.08 -0.59 10.04 -39.60 -0.40 -0.99 16 26 C -0.15 -1.32 9.99 -39.43 -0.39 -1.72 16 27 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.12 1.81 8.14 -51.93 -0.42 1.39 16 31 H 0.12 1.96 8.14 -51.92 -0.42 1.54 16 32 H 0.42 4.52 8.47 -34.47 -0.29 4.22 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.84 7.70 -51.93 -0.40 0.44 16 35 H 0.38 2.07 9.05 45.56 0.41 2.48 16 36 H 0.07 0.41 7.65 -51.93 -0.40 0.01 16 37 H 0.08 0.50 7.67 -51.93 -0.40 0.10 16 38 H 0.13 0.86 6.30 -52.49 -0.33 0.53 16 39 H 0.12 0.68 8.06 -52.48 -0.42 0.25 16 40 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 41 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 42 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 373.09 15.07 5.62 5.62 Total: -1.00 -36.79 373.09 -9.79 -46.58 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -5.18 Total: 3.87 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: -2.48 Total: -27.11 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.67 Total: -38.64 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -2.82 Total: -49.08 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 43.51 SS G_CDS: -0.59 Total: 42.92 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.79 -9.79 -46.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533554597.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.558 kcal (2) G-P(sol) polarization free energy of solvation -36.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds