Wall clock time and date at job start Tue Mar 31 2020 05:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99965 * 2 1 4 4 H 1.48501 * 109.47153 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47258 * 300.00006 * 3 2 1 6 6 H 1.48501 * 109.47187 * 60.00170 * 3 2 1 7 7 C 1.37871 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00523 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99869 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47138 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.47387 * 179.97438 * 10 9 7 12 12 O 1.42109 * 110.53807 * 68.37945 * 11 10 9 13 13 O 1.42098 * 110.54422 * 291.62974 * 11 10 9 14 14 N 1.65602 * 104.44973 * 179.97438 * 11 10 9 15 15 C 1.46498 * 119.99612 * 65.28269 * 14 11 10 16 16 C 1.53001 * 109.47089 * 164.71987 * 15 14 11 17 17 H 1.09005 * 109.46627 * 60.00018 * 16 15 14 18 18 O 1.42899 * 109.47278 * 299.99952 * 16 15 14 19 19 C 1.53003 * 109.47264 * 179.97438 * 16 15 14 20 20 O 1.42893 * 109.47169 * 185.00270 * 19 16 15 21 21 C 1.35903 * 117.00180 * 180.02562 * 20 19 16 22 22 C 1.38729 * 120.05121 * 359.72666 * 21 20 19 23 23 C 1.38153 * 119.94138 * 179.74419 * 22 21 20 24 24 C 1.38260 * 120.05298 * 0.50523 * 23 22 21 25 25 C 1.38270 * 120.11514 * 359.77147 * 24 23 22 26 26 C 1.38142 * 120.05273 * 359.97236 * 25 24 23 27 27 H 0.97007 * 119.99442 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.46912 * 60.00244 * 9 7 2 29 29 H 1.08993 * 109.47311 * 299.99748 * 9 7 2 30 30 H 1.09009 * 109.46641 * 59.99959 * 10 9 7 31 31 H 1.09001 * 109.47327 * 300.00783 * 10 9 7 32 32 H 0.97001 * 119.99942 * 244.99793 * 14 11 10 33 33 H 1.08996 * 109.46882 * 284.72133 * 15 14 11 34 34 H 1.08999 * 109.47498 * 44.72066 * 15 14 11 35 35 H 0.96701 * 113.99981 * 299.99932 * 18 16 15 36 36 H 1.09003 * 109.47074 * 305.00380 * 19 16 15 37 37 H 1.08994 * 109.46872 * 65.00127 * 19 16 15 38 38 H 1.07997 * 120.03210 * 359.97438 * 22 21 20 39 39 H 1.08003 * 119.97137 * 180.27129 * 23 22 21 40 40 H 1.08004 * 119.94261 * 179.74112 * 24 23 22 41 41 H 1.07998 * 119.97334 * 179.97438 * 25 24 23 42 42 H 1.08004 * 120.02750 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 16 1.3382 -5.2330 -0.0011 12 8 0.6629 -5.4194 -1.2375 13 8 0.6654 -5.4199 1.2366 14 7 2.5203 -6.3927 -0.0033 15 6 3.4164 -6.5273 1.1478 16 6 4.1424 -7.8721 1.0745 17 1 4.7238 -7.9213 0.1537 18 8 3.1843 -8.9322 1.0902 19 6 5.0788 -8.0125 2.2764 20 8 5.8419 -9.2137 2.1479 21 6 6.7284 -9.4906 3.1401 22 6 6.8650 -8.6210 4.2123 23 6 7.7631 -8.9073 5.2223 24 6 8.5328 -10.0542 5.1598 25 6 8.4026 -10.9196 4.0894 26 6 7.5023 -10.6404 3.0796 27 1 -0.4850 0.8402 -0.0004 28 1 0.6240 -2.5566 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8725 -3.6047 0.8878 31 1 2.8712 -3.6040 -0.8922 32 1 2.6168 -6.9855 -0.7650 33 1 4.1472 -5.7187 1.1359 34 1 2.8351 -6.4781 2.0686 35 1 2.6303 -8.9499 1.8826 36 1 5.7524 -7.1563 2.3141 37 1 4.4901 -8.0522 3.1928 38 1 6.2672 -7.7228 4.2593 39 1 7.8667 -8.2329 6.0595 40 1 9.2373 -10.2742 5.9483 41 1 9.0053 -11.8146 4.0427 42 1 7.4012 -11.3165 2.2434 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533554598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:31 Heat of formation + Delta-G solvation = -145.770322 kcal Electronic energy + Delta-G solvation = -24995.716998 eV Core-core repulsion = 21068.027824 eV Total energy + Delta-G solvation = -3927.689174 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.52807 -38.58794 -37.22048 -36.60952 -35.49365 -34.50046 -33.93710 -31.56765 -31.20694 -30.91811 -29.67688 -25.92873 -25.64695 -23.22743 -22.48027 -21.96423 -21.61651 -18.98781 -18.69632 -17.59317 -17.46792 -16.91531 -16.55288 -16.27993 -15.87846 -15.60126 -15.50508 -15.11328 -14.85225 -14.59198 -14.50682 -14.12275 -13.77135 -13.49239 -13.29191 -13.12447 -12.78640 -12.54176 -11.96792 -11.81707 -11.78022 -11.64287 -11.60334 -11.51284 -11.38588 -11.13325 -11.07399 -11.00046 -10.47340 -10.45222 -10.42891 -9.87107 -9.56135 -9.38046 -9.08140 -8.56906 -8.54544 -6.16423 -4.22181 0.71708 0.96384 1.08320 2.62385 3.12951 3.22242 3.29710 3.32685 3.42648 4.00583 4.17140 4.27316 4.33794 4.41076 4.48372 4.50547 4.58153 4.67466 4.75405 4.84723 4.94759 5.01793 5.11065 5.17958 5.19044 5.29377 5.47898 5.59293 5.62358 5.63067 5.83132 5.93138 6.03788 6.16719 6.39134 6.42911 6.99285 7.05053 7.25846 7.31351 7.32374 7.76508 8.13055 8.81456 9.42863 10.94549 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014989 B = 0.002297 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.606945 B =12186.174039 C =13653.292197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.590 4.590 11 S 2.596 3.404 12 O -0.964 6.964 13 O -0.968 6.968 14 N -1.120 6.120 15 C 0.087 3.913 16 C 0.107 3.893 17 H 0.117 0.883 18 O -0.545 6.545 19 C 0.025 3.975 20 O -0.303 6.303 21 C 0.130 3.870 22 C -0.211 4.211 23 C -0.080 4.080 24 C -0.162 4.162 25 C -0.082 4.082 26 C -0.153 4.153 27 H 0.265 0.735 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.417 0.583 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.378 0.622 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.272 -19.861 8.382 27.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.723 4.723 11 S 2.693 3.307 12 O -0.954 6.954 13 O -0.957 6.957 14 N -0.878 5.878 15 C -0.041 4.041 16 C 0.046 3.954 17 H 0.135 0.865 18 O -0.351 6.351 19 C -0.051 4.051 20 O -0.216 6.216 21 C 0.085 3.915 22 C -0.229 4.229 23 C -0.098 4.098 24 C -0.180 4.180 25 C -0.100 4.100 26 C -0.172 4.172 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.251 0.749 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.226 0.774 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.146 0.854 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 15.368 -20.078 7.792 26.458 hybrid contribution 0.916 1.443 0.447 1.767 sum 16.284 -18.635 8.239 26.083 Atomic orbital electron populations 1.69969 1.06106 1.27121 1.49556 1.25079 0.94992 0.99593 0.94908 0.86408 0.79879 0.83159 0.77790 1.19681 1.20781 1.20793 1.21030 0.93062 0.89756 1.52132 0.92018 1.18973 0.92707 0.90561 0.98958 1.30458 1.13742 1.18121 1.10018 1.05511 0.74569 0.76465 0.74146 1.93565 1.71369 1.85267 1.45226 1.93533 1.71418 1.85008 1.45781 1.55667 1.52900 1.52341 1.26900 1.21789 0.94247 0.97737 0.90327 1.22080 0.88374 0.86441 0.98507 0.86503 1.86641 1.50808 1.50773 1.46832 1.23582 0.94658 0.86805 1.00061 1.86127 1.50243 1.41907 1.43355 1.19082 0.90201 0.94385 0.87862 1.21325 1.03934 1.01415 0.96268 1.20990 0.94478 0.96713 0.97620 1.21087 1.01655 0.95804 0.99446 1.20989 0.96821 0.99058 0.93111 1.20478 0.98423 0.96952 1.01303 0.92554 0.94770 0.94797 0.86436 0.86020 0.74912 0.90361 0.89528 0.77369 0.90449 0.91027 0.85336 0.85726 0.85944 0.85391 0.85165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.07 9.11 -34.44 -0.31 -14.38 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.67 4.98 -27.88 -0.14 0.53 16 10 C -0.59 -10.59 6.02 37.16 0.22 -10.36 16 11 S 2.60 43.46 5.46 -107.50 -0.59 42.87 16 12 O -0.96 -19.47 18.08 -57.54 -1.04 -20.51 16 13 O -0.97 -18.85 17.49 -57.54 -1.01 -19.86 16 14 N -1.12 -13.13 5.75 -10.61 -0.06 -13.19 16 15 C 0.09 0.78 5.80 -4.04 -0.02 0.76 16 16 C 0.11 0.88 3.34 -26.73 -0.09 0.79 16 17 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 18 O -0.55 -5.36 13.17 -40.06 -0.53 -5.89 16 19 C 0.03 0.19 4.38 37.16 0.16 0.35 16 20 O -0.30 -2.98 10.10 -24.26 -0.25 -3.23 16 21 C 0.13 1.23 6.69 -39.22 -0.26 0.97 16 22 C -0.21 -1.74 9.04 -39.43 -0.36 -2.10 16 23 C -0.08 -0.59 10.04 -39.60 -0.40 -0.99 16 24 C -0.16 -1.13 10.04 -39.56 -0.40 -1.53 16 25 C -0.08 -0.59 10.04 -39.60 -0.40 -0.98 16 26 C -0.15 -1.32 9.99 -39.43 -0.39 -1.71 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.12 1.82 8.14 -51.92 -0.42 1.40 16 31 H 0.12 1.97 8.14 -51.92 -0.42 1.54 16 32 H 0.42 4.42 8.62 -34.47 -0.30 4.13 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.77 7.68 -51.93 -0.40 0.37 16 35 H 0.38 2.70 9.05 45.56 0.41 3.11 16 36 H 0.08 0.46 7.65 -51.93 -0.40 0.06 16 37 H 0.07 0.44 7.67 -51.93 -0.40 0.04 16 38 H 0.13 0.86 6.30 -52.49 -0.33 0.53 16 39 H 0.12 0.68 8.06 -52.48 -0.42 0.25 16 40 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 41 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 42 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 373.21 15.07 5.62 5.62 Total: -1.00 -36.88 373.21 -9.79 -46.67 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.18 Total: 4.21 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: -2.48 Total: -27.17 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.68 Total: -38.57 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -2.82 Total: -49.49 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 43.46 SS G_CDS: -0.59 Total: 42.87 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.88 -9.79 -46.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533554598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.103 kcal (2) G-P(sol) polarization free energy of solvation -36.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds