Wall clock time and date at job start Tue Mar 31 2020 07:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46808 * 2 1 4 4 H 1.08999 * 109.47106 * 305.36570 * 3 2 1 5 5 C 1.50702 * 109.46889 * 185.37103 * 3 2 1 6 6 H 1.08004 * 119.99944 * 244.79662 * 5 3 2 7 7 C 1.37873 * 120.00187 * 64.79566 * 5 3 2 8 8 N 1.31515 * 119.99871 * 7.04842 * 7 5 3 9 9 Si 1.86803 * 120.00139 * 187.04386 * 7 5 3 10 10 H 1.48491 * 109.47003 * 84.99341 * 9 7 5 11 11 H 1.48504 * 109.47072 * 204.99537 * 9 7 5 12 12 H 1.48495 * 109.46926 * 324.99099 * 9 7 5 13 13 N 1.46500 * 109.47312 * 65.37188 * 3 2 1 14 14 C 1.34778 * 119.99915 * 274.99725 * 13 3 2 15 15 O 1.21696 * 119.99629 * 0.02562 * 14 13 3 16 16 C 1.46680 * 119.99938 * 180.02562 * 14 13 3 17 17 C 1.37870 * 126.22978 * 180.02562 * 16 14 13 18 18 C 1.39837 * 107.08386 * 179.97438 * 17 16 14 19 19 S 1.76197 * 126.06639 * 180.02562 * 18 17 16 20 20 O 1.42101 * 106.40204 * 203.53932 * 19 18 17 21 21 O 1.42100 * 106.40590 * 336.45612 * 19 18 17 22 22 N 1.65593 * 107.22014 * 89.99980 * 19 18 17 23 23 C 1.46496 * 120.00109 * 90.00032 * 22 19 18 24 24 C 1.46504 * 119.99703 * 269.99777 * 22 19 18 25 25 C 1.35449 * 107.86114 * 359.97438 * 18 17 16 26 26 N 1.35526 * 108.87535 * 359.76722 * 25 18 17 27 27 H 0.96997 * 125.68019 * 180.26140 * 26 25 18 28 28 H 1.09002 * 109.46784 * 60.00411 * 1 2 3 29 29 H 1.08999 * 109.47328 * 300.00262 * 1 2 3 30 30 H 1.09003 * 109.46985 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47253 * 119.99337 * 2 1 3 32 32 H 1.08999 * 109.47328 * 239.99738 * 2 1 3 33 33 H 0.96998 * 120.00201 * 180.02562 * 8 7 5 34 34 H 0.96996 * 120.00012 * 95.00177 * 13 3 2 35 35 H 1.08005 * 126.45681 * 359.97438 * 17 16 14 36 36 H 1.08995 * 109.47673 * 359.97438 * 23 22 19 37 37 H 1.08999 * 109.47476 * 120.00510 * 23 22 19 38 38 H 1.09005 * 109.47056 * 239.99647 * 23 22 19 39 39 H 1.09001 * 109.47242 * 90.00305 * 24 22 19 40 40 H 1.09007 * 109.47081 * 209.99835 * 24 22 19 41 41 H 1.08998 * 109.47421 * 329.99731 * 24 22 19 42 42 H 1.08003 * 125.55770 * 180.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6002 1.9833 -0.8380 5 6 3.5411 1.4446 -0.1330 6 1 4.1542 1.8171 0.6744 7 6 4.1317 0.9711 -1.2853 8 7 3.3878 0.6475 -2.3204 9 14 5.9887 0.7892 -1.3763 10 1 6.3863 -0.5217 -0.8032 11 1 6.4243 0.8624 -2.7941 12 1 6.6315 1.8825 -0.6039 13 7 1.6600 2.0948 1.2556 14 6 0.4434 2.6615 1.3793 15 8 -0.3396 2.6308 0.4482 16 6 0.0633 3.3151 2.6362 17 6 -1.1409 3.9315 2.9024 18 6 -1.0740 4.4151 4.2128 19 16 -2.3469 5.2882 5.0625 20 8 -1.7049 6.0422 6.0816 21 8 -3.1679 5.8749 4.0620 22 7 -3.2833 4.1613 5.8341 23 6 -2.9549 3.7478 7.2006 24 6 -4.4401 3.5779 5.1503 25 6 0.1425 4.0923 4.7132 26 7 0.8411 3.4188 3.7671 27 1 1.7404 3.0700 3.8690 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 3.8033 0.3140 -3.1310 34 1 2.2841 2.1189 1.9977 35 1 -1.9780 4.0236 2.2262 36 1 -2.0692 4.2849 7.5399 37 1 -3.7926 3.9745 7.8601 38 1 -2.7583 2.6757 7.2185 39 1 -4.1299 2.6833 4.6102 40 1 -5.2010 3.3134 5.8846 41 1 -4.8503 4.3029 4.4472 42 1 0.4963 4.3290 5.7058 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545154711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:19 Heat of formation + Delta-G solvation = -66.886328 kcal Electronic energy + Delta-G solvation = -26266.470673 eV Core-core repulsion = 22374.494917 eV Total energy + Delta-G solvation = -3891.975756 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.40703 -38.71818 -37.29317 -36.34076 -35.85595 -35.19539 -32.63980 -31.61301 -31.04748 -29.37830 -28.34405 -27.04524 -24.86315 -23.57865 -22.51996 -21.97378 -20.29892 -19.69239 -19.04890 -18.73993 -17.58523 -16.62548 -16.28195 -16.10115 -15.56808 -15.27495 -15.09510 -14.71439 -14.55293 -14.31022 -14.02746 -13.54375 -13.29499 -13.15105 -12.84659 -12.79090 -12.71464 -12.57662 -12.17132 -12.12347 -11.76235 -11.73500 -11.59309 -11.45951 -11.31461 -11.11288 -10.89384 -10.46205 -10.32559 -9.82006 -9.69851 -9.39155 -9.31750 -9.21720 -8.60598 -8.52590 -8.01460 -6.24277 -4.32012 0.36683 1.47308 1.95595 2.84332 3.03123 3.17282 3.24391 3.25499 3.72529 3.78193 3.87666 4.21719 4.28823 4.57327 4.69413 4.99525 5.08982 5.11537 5.13072 5.21141 5.34912 5.46278 5.59402 5.60322 5.68868 5.76633 6.25274 6.26514 6.30155 6.31810 6.50043 6.58071 6.88550 7.04260 7.11806 7.17392 7.25495 7.48151 7.58530 7.71819 7.95784 8.44773 8.64434 8.88809 9.34370 10.83513 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.024629 B = 0.002744 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.607408 B =10202.047680 C =10654.477117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.270 3.730 4 H 0.059 0.941 5 C -0.541 4.541 6 H 0.060 0.940 7 C 0.070 3.930 8 N -0.878 5.878 9 Si 0.900 3.100 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.705 5.705 14 C 0.571 3.429 15 O -0.527 6.527 16 C -0.036 4.036 17 C -0.037 4.037 18 C -0.757 4.757 19 S 2.723 3.277 20 O -0.966 6.966 21 O -0.956 6.956 22 N -1.007 6.007 23 C 0.087 3.913 24 C 0.083 3.917 25 C 0.133 3.867 26 N -0.523 5.523 27 H 0.424 0.576 28 H 0.053 0.947 29 H 0.040 0.960 30 H 0.025 0.975 31 H 0.033 0.967 32 H 0.085 0.915 33 H 0.266 0.734 34 H 0.381 0.619 35 H 0.161 0.839 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.852 3.271 19.335 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C 0.168 3.832 4 H 0.077 0.923 5 C -0.579 4.579 6 H 0.078 0.922 7 C -0.134 4.134 8 N -0.514 5.514 9 Si 0.727 3.273 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.352 5.352 14 C 0.356 3.644 15 O -0.404 6.404 16 C -0.149 4.149 17 C -0.062 4.062 18 C -0.851 4.851 19 S 2.813 3.187 20 O -0.956 6.956 21 O -0.946 6.946 22 N -0.846 5.846 23 C -0.059 4.059 24 C -0.062 4.062 25 C -0.012 4.012 26 N -0.117 5.117 27 H 0.262 0.738 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.213 0.787 35 H 0.179 0.821 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -10.365 3.916 18.354 21.439 hybrid contribution 2.248 -1.055 0.159 2.488 sum -8.117 2.861 18.513 20.416 Atomic orbital electron populations 1.21861 0.97956 0.98356 1.01565 1.21863 0.93027 0.99643 1.01426 1.18874 0.94627 0.89084 0.80588 0.92339 1.21129 0.90405 1.44090 1.02321 0.92225 1.24883 0.98593 0.94943 0.95017 1.69957 1.35534 1.42616 1.03302 0.86494 0.84789 0.78590 0.77420 1.20403 1.21021 1.19949 1.46457 1.13926 1.56099 1.18744 1.16975 0.83246 0.79109 0.85119 1.90845 1.51119 1.59785 1.38697 1.21262 0.94005 1.10536 0.89102 1.20853 0.96756 0.95404 0.93165 1.30958 1.15763 1.29234 1.09192 1.00929 0.72654 0.72534 0.72624 1.93545 1.76765 1.67271 1.58036 1.93560 1.67167 1.74047 1.59867 1.57305 1.40956 1.62299 1.24025 1.21545 1.02056 1.00831 0.81428 1.21597 0.87485 0.99389 0.97729 1.21742 0.90781 0.93987 0.94643 1.42433 1.15874 1.41918 1.11506 0.73765 0.92800 0.94103 0.95610 0.94837 0.89697 0.92381 0.78731 0.82119 0.89688 0.91781 0.92192 0.92400 0.90746 0.89691 0.79689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.52 37.16 0.32 -2.67 16 2 C -0.12 -2.78 5.49 -26.73 -0.15 -2.93 16 3 C 0.27 6.48 2.11 -69.08 -0.15 6.34 16 4 H 0.06 1.66 7.55 -51.93 -0.39 1.27 16 5 C -0.54 -13.71 8.67 -34.44 -0.30 -14.01 16 6 H 0.06 1.43 7.73 -52.48 -0.41 1.03 16 7 C 0.07 1.82 5.19 -17.82 -0.09 1.73 16 8 N -0.88 -24.12 12.00 55.43 0.66 -23.46 16 9 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 13 N -0.71 -13.73 5.02 -56.24 -0.28 -14.01 16 14 C 0.57 11.08 6.37 -12.85 -0.08 11.00 16 15 O -0.53 -12.09 14.02 5.19 0.07 -12.02 16 16 C -0.04 -0.56 7.06 -81.98 -0.58 -1.14 16 17 C -0.04 -0.54 10.44 -39.12 -0.41 -0.95 16 18 C -0.76 -9.23 6.17 -39.98 -0.25 -9.47 16 19 S 2.72 31.54 5.83 -107.50 -0.63 30.91 16 20 O -0.97 -12.47 16.41 -57.17 -0.94 -13.41 16 21 O -0.96 -14.04 16.47 -57.17 -0.94 -14.99 16 22 N -1.01 -8.76 3.58 -129.20 -0.46 -9.22 16 23 C 0.09 0.54 10.67 59.84 0.64 1.18 16 24 C 0.08 0.63 10.70 59.85 0.64 1.27 16 25 C 0.13 1.33 11.64 -16.92 -0.20 1.13 16 26 N -0.52 -5.81 5.99 -9.39 -0.06 -5.86 16 27 H 0.42 3.46 8.19 -40.82 -0.33 3.13 16 28 H 0.05 1.24 7.86 -51.93 -0.41 0.83 16 29 H 0.04 0.85 5.63 -51.93 -0.29 0.55 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 2.17 6.64 -51.93 -0.34 1.82 16 33 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.38 6.16 7.66 -40.82 -0.31 5.85 16 35 H 0.16 2.41 8.06 -52.48 -0.42 1.98 16 36 H 0.08 0.51 6.91 -51.93 -0.36 0.15 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.39 8.07 -51.92 -0.42 -0.03 16 41 H 0.08 0.70 7.02 -51.93 -0.36 0.33 16 42 H 0.19 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 361.64 15.07 5.45 5.45 Total: -1.00 -34.60 361.64 -8.47 -43.07 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -5.73 Total: 7.08 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -0.60 Total: -8.52 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.14 Total: -52.56 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -1.81 Total: -40.41 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 16 Polarization: 31.54 SS G_CDS: -0.63 Total: 30.91 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.60 -8.47 -43.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545154711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.812 kcal (2) G-P(sol) polarization free energy of solvation -34.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds