Wall clock time and date at job start Tue Mar 31 2020 07:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47501 * 2 1 4 4 H 1.09006 * 109.46554 * 54.99946 * 3 2 1 5 5 C 1.50694 * 109.47091 * 174.99720 * 3 2 1 6 6 H 1.08006 * 119.99762 * 120.00733 * 5 3 2 7 7 C 1.37877 * 120.00442 * 300.00331 * 5 3 2 8 8 N 1.31510 * 120.00100 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00136 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47240 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47039 * 119.99928 * 9 7 5 12 12 H 1.48506 * 109.46940 * 239.99775 * 9 7 5 13 13 N 1.46496 * 109.47306 * 295.00008 * 3 2 1 14 14 C 1.34781 * 120.00055 * 84.99445 * 13 3 2 15 15 O 1.21701 * 119.99732 * 0.02562 * 14 13 3 16 16 C 1.46677 * 120.00122 * 179.97438 * 14 13 3 17 17 C 1.37873 * 126.23083 * 180.33103 * 16 14 13 18 18 C 1.39835 * 107.08015 * 180.12242 * 17 16 14 19 19 S 1.76204 * 126.06695 * 179.83799 * 18 17 16 20 20 O 1.42099 * 106.40137 * 156.17588 * 19 18 17 21 21 O 1.42109 * 106.39984 * 23.25638 * 19 18 17 22 22 N 1.65594 * 107.22029 * 269.72178 * 19 18 17 23 23 C 1.46499 * 120.00527 * 89.99701 * 22 19 18 24 24 C 1.46510 * 119.99562 * 269.99678 * 22 19 18 25 25 C 1.35450 * 107.86821 * 359.57754 * 18 17 16 26 26 N 1.35534 * 108.87107 * 0.26569 * 25 18 17 27 27 H 0.97003 * 125.67831 * 179.97438 * 26 25 18 28 28 H 1.08997 * 109.47145 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47265 * 300.00045 * 1 2 3 30 30 H 1.09006 * 109.46890 * 59.99465 * 1 2 3 31 31 H 1.09005 * 109.46897 * 239.99806 * 2 1 3 32 32 H 1.09006 * 109.46890 * 120.00535 * 2 1 3 33 33 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 34 34 H 0.96994 * 119.99830 * 265.00082 * 13 3 2 35 35 H 1.07995 * 126.46061 * 359.95930 * 17 16 14 36 36 H 1.09002 * 109.47391 * 179.97438 * 23 22 19 37 37 H 1.09001 * 109.46813 * 60.00003 * 23 22 19 38 38 H 1.09004 * 109.47041 * 300.00130 * 23 22 19 39 39 H 1.08999 * 109.47096 * 269.99806 * 24 22 19 40 40 H 1.09001 * 109.46763 * 30.00200 * 24 22 19 41 41 H 1.09005 * 109.46576 * 150.00183 * 24 22 19 42 42 H 1.08000 * 125.56756 * 180.27957 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8782 1.2280 8 7 3.4062 0.3373 2.1733 9 14 6.0049 0.8810 1.3818 10 1 6.5988 1.5460 0.1943 11 1 6.3990 1.6164 2.6103 12 1 6.4970 -0.5178 1.4630 13 7 1.6526 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3419 2.6325 -0.4309 16 6 0.0475 3.3207 -2.6201 17 6 -1.1557 3.9438 -2.8752 18 6 -1.0986 4.4258 -4.1866 19 16 -2.3759 5.3024 -5.0262 20 8 -1.7394 6.0583 -6.0473 21 8 -3.1900 5.8874 -4.0190 22 7 -3.3183 4.1785 -5.7948 23 6 -4.4715 3.5945 -5.1052 24 6 -2.9989 3.7681 -7.1645 25 6 0.1150 4.1044 -4.6951 26 7 0.8210 3.4326 -3.7531 27 1 1.7214 3.0878 -3.8598 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8292 -0.0606 2.9503 34 1 2.2720 2.1231 -1.9977 35 1 -1.9867 4.0390 -2.1921 36 1 -4.9660 2.8811 -5.7644 37 1 -5.1717 4.3849 -4.8351 38 1 -4.1348 3.0834 -4.2032 39 1 -3.5184 4.4177 -7.8689 40 1 -1.9235 3.8442 -7.3250 41 1 -3.3173 2.7370 -7.3183 42 1 0.4634 4.3445 -5.6888 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545154718.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:23 Heat of formation + Delta-G solvation = -65.394222 kcal Electronic energy + Delta-G solvation = -26274.138997 eV Core-core repulsion = 22382.227944 eV Total energy + Delta-G solvation = -3891.911053 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.40897 -38.71835 -37.25845 -36.34387 -35.84225 -35.20804 -32.66761 -31.58277 -31.00231 -29.37817 -28.34760 -27.04772 -24.89792 -23.58772 -22.51456 -21.97166 -20.29031 -19.65791 -19.05017 -18.73351 -17.51066 -16.63559 -16.28257 -16.09010 -15.57782 -15.26659 -15.09735 -14.64867 -14.52827 -14.31507 -14.00913 -13.54764 -13.38998 -13.25653 -12.88543 -12.78783 -12.71983 -12.41991 -12.14318 -12.09840 -11.87488 -11.70018 -11.63335 -11.38959 -11.29762 -11.07175 -10.94691 -10.42400 -10.30842 -9.76071 -9.70040 -9.41027 -9.31349 -9.16822 -8.62059 -8.52777 -7.99929 -6.23007 -4.33467 0.37361 1.46925 1.95454 2.84254 3.03611 3.16011 3.24168 3.25903 3.73724 3.78304 3.87489 4.21160 4.28160 4.51866 4.68925 4.96415 5.08241 5.08723 5.14405 5.23074 5.34548 5.44863 5.56895 5.60130 5.68250 5.76642 6.25478 6.29469 6.31461 6.35936 6.54968 6.58064 6.92310 7.05911 7.12971 7.20080 7.27850 7.49676 7.59487 7.77094 8.05502 8.44409 8.63046 8.88603 9.33917 10.82323 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.024632 B = 0.002746 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.450177 B =10194.112326 C =10669.087095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.053 0.947 5 C -0.538 4.538 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.879 5.879 9 Si 0.902 3.098 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.705 5.705 14 C 0.571 3.429 15 O -0.528 6.528 16 C -0.036 4.036 17 C -0.037 4.037 18 C -0.757 4.757 19 S 2.724 3.276 20 O -0.965 6.965 21 O -0.955 6.955 22 N -1.009 6.009 23 C 0.090 3.910 24 C 0.095 3.905 25 C 0.132 3.868 26 N -0.523 5.523 27 H 0.424 0.576 28 H 0.024 0.976 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.030 0.970 32 H 0.101 0.899 33 H 0.265 0.735 34 H 0.381 0.619 35 H 0.161 0.839 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.869 3.643 -18.964 21.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.071 0.929 5 C -0.576 4.576 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.516 5.516 9 Si 0.730 3.270 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.352 5.352 14 C 0.355 3.645 15 O -0.405 6.405 16 C -0.149 4.149 17 C -0.062 4.062 18 C -0.852 4.852 19 S 2.813 3.187 20 O -0.955 6.955 21 O -0.946 6.946 22 N -0.848 5.848 23 C -0.055 4.055 24 C -0.051 4.051 25 C -0.012 4.012 26 N -0.117 5.117 27 H 0.262 0.738 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.213 0.787 35 H 0.179 0.821 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -10.367 4.262 -17.997 21.202 hybrid contribution 2.231 -0.934 -0.144 2.423 sum -8.136 3.329 -18.142 20.159 Atomic orbital electron populations 1.21856 0.98226 0.98255 1.01312 1.21944 0.92717 0.99580 1.02383 1.18873 0.94427 0.89262 0.80507 0.92912 1.21211 0.90492 1.39432 1.06510 0.92156 1.24882 0.98736 0.94666 0.95303 1.69890 1.35161 1.37308 1.09265 0.86385 0.84634 0.77825 0.78184 1.19820 1.20764 1.20803 1.46468 1.14016 1.56000 1.18744 1.16976 0.83209 0.79126 0.85148 1.90844 1.51513 1.59873 1.38276 1.21267 0.94134 1.10391 0.89088 1.20854 0.96798 0.95328 0.93236 1.30969 1.15961 1.29276 1.08953 1.00965 0.72625 0.72473 0.72625 1.93551 1.76915 1.67131 1.57945 1.93568 1.67483 1.74048 1.59464 1.57401 1.41118 1.62597 1.23664 1.21560 0.87632 0.99098 0.97242 1.21502 1.01293 1.00923 0.81373 1.21750 0.90653 0.94091 0.94689 1.42440 1.15731 1.41987 1.11576 0.73754 0.95665 0.92953 0.94348 0.95081 0.88078 0.92450 0.78708 0.82119 0.90287 0.91396 0.91810 0.92340 0.91095 0.90982 0.79689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.51 37.16 0.32 -2.69 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.12 16 3 C 0.27 6.52 2.24 -69.09 -0.15 6.36 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 5 C -0.54 -13.62 8.73 -34.44 -0.30 -13.92 16 6 H 0.06 1.45 7.74 -52.48 -0.41 1.05 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -23.91 11.29 55.43 0.63 -23.28 16 9 Si 0.90 19.98 29.54 -169.99 -5.02 14.95 16 10 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.71 -13.76 5.02 -56.24 -0.28 -14.04 16 14 C 0.57 11.09 6.35 -12.85 -0.08 11.01 16 15 O -0.53 -12.10 14.02 5.19 0.07 -12.03 16 16 C -0.04 -0.56 7.06 -81.98 -0.58 -1.14 16 17 C -0.04 -0.55 10.44 -39.12 -0.41 -0.96 16 18 C -0.76 -9.25 6.18 -39.98 -0.25 -9.50 16 19 S 2.72 31.84 5.80 -107.50 -0.62 31.22 16 20 O -0.97 -12.63 16.92 -57.17 -0.97 -13.60 16 21 O -0.96 -14.19 17.03 -57.17 -0.97 -15.17 16 22 N -1.01 -8.78 3.58 -129.19 -0.46 -9.25 16 23 C 0.09 0.67 10.30 59.85 0.62 1.29 16 24 C 0.09 0.59 10.26 59.85 0.61 1.20 16 25 C 0.13 1.33 11.64 -16.91 -0.20 1.13 16 26 N -0.52 -5.82 5.99 -9.39 -0.06 -5.88 16 27 H 0.42 3.48 8.19 -40.82 -0.33 3.14 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 30 H 0.04 0.80 5.64 -51.93 -0.29 0.51 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 33 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.38 6.19 7.67 -40.82 -0.31 5.88 16 35 H 0.16 2.41 8.06 -52.49 -0.42 1.99 16 36 H 0.08 0.40 7.79 -51.93 -0.40 -0.01 16 37 H 0.07 0.51 8.01 -51.93 -0.42 0.10 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.38 7.79 -51.93 -0.40 -0.02 16 41 H 0.07 0.31 7.92 -51.93 -0.41 -0.10 16 42 H 0.19 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -34.59 362.07 -8.66 -43.25 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -5.76 Total: 7.03 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -0.66 Total: -8.66 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.18 Total: -52.45 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -1.87 Total: -40.79 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 31.84 SS G_CDS: -0.62 Total: 31.22 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.59 -8.66 -43.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545154718.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.148 kcal (2) G-P(sol) polarization free energy of solvation -34.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds