Wall clock time and date at job start Tue Mar 31 2020 05:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42896 * 112.95056 * 48.40423 * 9 7 2 11 11 C 1.53948 * 113.74115 * 276.66959 * 9 7 2 12 12 N 1.47581 * 86.11831 * 222.05373 * 11 9 7 13 13 C 1.34781 * 134.48697 * 204.64135 * 12 11 9 14 14 O 1.21278 * 119.99565 * 179.97438 * 13 12 11 15 15 C 1.50691 * 120.00407 * 359.97438 * 13 12 11 16 16 N 1.46499 * 109.47453 * 179.97438 * 15 13 12 17 17 C 1.35108 * 120.52431 * 269.72393 * 16 15 13 18 18 O 1.21769 * 120.40345 * 359.97437 * 17 16 15 19 19 C 1.46704 * 119.19358 * 179.76771 * 17 16 15 20 20 N 1.30216 * 120.23796 * 0.48777 * 19 17 16 21 21 C 1.34681 * 121.06056 * 359.78456 * 20 19 17 22 22 C 1.40357 * 120.09355 * 180.02562 * 21 20 19 23 23 C 1.36400 * 119.97460 * 179.97438 * 22 21 20 24 24 C 1.38892 * 120.67118 * 359.97438 * 23 22 21 25 25 C 1.37748 * 120.51222 * 0.02562 * 24 23 22 26 26 C 1.38041 * 120.52283 * 89.99592 * 16 15 13 27 27 C 1.47575 * 91.01727 * 24.63778 * 12 11 9 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 0.96697 * 113.99744 * 309.67215 * 10 9 7 30 30 H 1.09002 * 113.76590 * 336.35388 * 11 9 7 31 31 H 1.08998 * 113.77136 * 107.74611 * 11 9 7 32 32 H 1.09006 * 109.47331 * 299.99811 * 15 13 12 33 33 H 1.09001 * 109.47313 * 59.99753 * 15 13 12 34 34 H 1.07997 * 119.87926 * 180.25154 * 19 17 16 35 35 H 1.08008 * 120.01357 * 359.94944 * 22 21 20 36 36 H 1.08004 * 119.66529 * 179.97438 * 23 22 21 37 37 H 1.08007 * 119.74933 * 179.97438 * 24 23 22 38 38 H 1.07999 * 120.09072 * 180.02562 * 25 24 23 39 39 H 1.08992 * 113.77450 * 221.06110 * 27 12 11 40 40 H 1.09008 * 113.76786 * 89.66105 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0683 -0.3212 0.9849 11 6 4.1319 -1.0294 -1.3993 12 7 5.0923 -2.0710 -0.9861 13 6 6.3443 -2.4028 -1.3591 14 8 6.9074 -3.3369 -0.8289 15 6 7.0442 -1.6131 -2.4348 16 7 8.3824 -2.1673 -2.6551 17 6 9.4407 -1.7043 -1.9544 18 8 9.2950 -0.8194 -1.1307 19 6 10.7668 -2.2838 -2.1948 20 7 10.9200 -3.2262 -3.0803 21 6 9.8729 -3.6912 -3.7883 22 6 10.0610 -4.7080 -4.7374 23 6 8.9988 -5.1775 -5.4527 24 6 7.7255 -4.6600 -5.2527 25 6 7.5138 -3.6617 -4.3274 26 6 8.5828 -3.1669 -3.5858 27 6 4.1314 -2.6033 -0.0006 28 1 -0.4850 0.8401 0.0004 29 1 3.7023 0.5737 0.9692 30 1 3.4725 -1.3369 -2.2110 31 1 4.5871 -0.0532 -1.5660 32 1 6.4701 -1.6706 -3.3597 33 1 7.1293 -0.5718 -2.1241 34 1 11.6198 -1.9249 -1.6380 35 1 11.0466 -5.1182 -4.9015 36 1 9.1493 -5.9598 -6.1820 37 1 6.8951 -5.0425 -5.8276 38 1 6.5208 -3.2645 -4.1771 39 1 4.5862 -2.8836 0.9494 40 1 3.4719 -3.3731 -0.4015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548658059.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:45 Heat of formation + Delta-G solvation = 7.373596 kcal Electronic energy + Delta-G solvation = -27909.336399 eV Core-core repulsion = 23885.136843 eV Total energy + Delta-G solvation = -4024.199555 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.95432 -39.89193 -38.94226 -37.88944 -36.53486 -35.81081 -34.60000 -32.63073 -31.00920 -30.36246 -29.78766 -28.15804 -25.83450 -25.44090 -24.88976 -23.74339 -22.41539 -20.42541 -19.31324 -19.12397 -18.82094 -17.63857 -17.45378 -17.06035 -16.43389 -15.83695 -15.61550 -15.50519 -15.33886 -15.18753 -14.72024 -14.41177 -14.17468 -13.71971 -13.69840 -13.64587 -13.31105 -12.82993 -12.63048 -12.37096 -12.26821 -12.22105 -12.06273 -11.92078 -11.36310 -11.31910 -11.17007 -11.02145 -10.68505 -10.22222 -9.92854 -9.63579 -9.44045 -9.13098 -8.99049 -8.81601 -8.28036 -8.19833 -6.50308 -4.57251 -0.02793 0.85414 1.59971 2.07020 2.70796 2.77226 2.93207 2.95150 3.08683 3.18939 3.68398 3.75984 3.87235 3.95290 4.30448 4.45371 4.49224 4.62769 4.64731 4.83381 4.90858 4.95822 4.99999 5.09884 5.30201 5.41121 5.46444 5.65917 5.79082 5.84886 5.92955 5.94476 6.06544 6.07878 6.23762 6.26225 6.36688 6.47364 6.58478 7.10559 7.33667 7.55219 7.93686 8.06082 8.32070 8.41932 8.53281 9.06818 10.61728 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.020366 B = 0.003323 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.536607 B = 8423.539428 C = 9099.716279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.081 3.919 3 Si 0.858 3.142 4 H -0.265 1.265 5 H -0.258 1.258 6 H -0.282 1.282 7 C -0.538 4.538 8 H 0.092 0.908 9 C 0.197 3.803 10 O -0.551 6.551 11 C 0.057 3.943 12 N -0.630 5.630 13 C 0.519 3.481 14 O -0.545 6.545 15 C 0.079 3.921 16 N -0.493 5.493 17 C 0.492 3.508 18 O -0.507 6.507 19 C 0.097 3.903 20 N -0.402 5.402 21 C 0.016 3.984 22 C -0.034 4.034 23 C -0.150 4.150 24 C -0.055 4.055 25 C -0.160 4.160 26 C 0.168 3.832 27 C 0.129 3.871 28 H 0.272 0.728 29 H 0.352 0.648 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.196 0.804 35 H 0.142 0.858 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.077 0.923 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.470 -5.213 -13.374 21.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.125 4.125 3 Si 0.687 3.313 4 H -0.192 1.192 5 H -0.183 1.183 6 H -0.209 1.209 7 C -0.576 4.576 8 H 0.110 0.890 9 C 0.156 3.844 10 O -0.362 6.362 11 C -0.066 4.066 12 N -0.364 5.364 13 C 0.306 3.694 14 O -0.423 6.423 15 C -0.045 4.045 16 N -0.211 5.211 17 C 0.283 3.717 18 O -0.379 6.379 19 C -0.102 4.102 20 N -0.112 5.112 21 C -0.095 4.095 22 C -0.053 4.053 23 C -0.169 4.169 24 C -0.074 4.074 25 C -0.181 4.181 26 C 0.064 3.936 27 C 0.008 3.992 28 H 0.082 0.918 29 H 0.204 0.796 30 H 0.118 0.882 31 H 0.089 0.911 32 H 0.138 0.862 33 H 0.145 0.855 34 H 0.213 0.787 35 H 0.159 0.841 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.095 0.905 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 16.647 -6.059 -12.781 21.845 hybrid contribution -0.952 1.849 0.035 2.080 sum 15.696 -4.209 -12.746 20.653 Atomic orbital electron populations 1.69851 1.06066 1.27734 1.47274 1.25006 0.94923 0.99007 0.93521 0.87343 0.80211 0.84360 0.79383 1.19165 1.18318 1.20889 1.21208 0.87488 0.95768 1.53105 0.88970 1.20514 0.92668 0.87518 0.83678 1.86501 1.67493 1.24282 1.57966 1.24761 0.88631 0.90301 1.02878 1.50067 1.11813 1.34417 1.40114 1.20082 0.81294 0.84371 0.83694 1.90699 1.65351 1.30245 1.56050 1.21687 0.81960 1.00441 1.00460 1.45298 1.09106 1.32817 1.33906 1.19993 0.85963 0.84107 0.81643 1.90928 1.85030 1.29875 1.32105 1.26078 0.95016 0.93269 0.95855 1.67846 1.32137 1.08126 1.03114 1.18319 0.86802 1.02102 1.02290 1.20772 1.00115 0.92516 0.91903 1.20821 0.92375 1.02010 1.01722 1.21229 0.97600 0.93496 0.95116 1.20888 0.97834 1.00498 0.98865 1.18888 0.95461 0.89248 0.89987 1.23356 0.86998 0.97367 0.91494 0.91783 0.79555 0.88250 0.91097 0.86223 0.85456 0.78729 0.84058 0.84723 0.84597 0.84787 0.90459 0.88477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.79 13.96 55.43 0.77 -23.02 16 2 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.86 18.35 24.34 -169.99 -4.14 14.21 16 4 H -0.27 -5.62 7.06 56.52 0.40 -5.22 16 5 H -0.26 -5.09 5.28 56.52 0.30 -4.80 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -13.38 9.20 -34.44 -0.32 -13.69 16 8 H 0.09 2.45 8.06 -52.49 -0.42 2.03 16 9 C 0.20 4.34 1.06 -90.84 -0.10 4.24 16 10 O -0.55 -12.86 13.32 -35.23 -0.47 -13.33 16 11 C 0.06 1.06 7.20 -2.97 -0.02 1.04 16 12 N -0.63 -12.04 3.61 -178.31 -0.64 -12.68 16 13 C 0.52 9.78 8.13 -10.99 -0.09 9.69 16 14 O -0.55 -12.11 17.16 5.56 0.10 -12.02 16 15 C 0.08 1.17 5.15 -5.20 -0.03 1.14 16 16 N -0.49 -7.40 2.15 -115.97 -0.25 -7.65 16 17 C 0.49 7.75 7.64 -12.69 -0.10 7.65 16 18 O -0.51 -9.45 16.80 5.13 0.09 -9.36 16 19 C 0.10 1.20 11.44 -14.82 -0.17 1.03 16 20 N -0.40 -5.01 10.34 -9.24 -0.10 -5.10 16 21 C 0.02 0.20 6.57 -84.88 -0.56 -0.36 16 22 C -0.03 -0.32 9.95 -39.45 -0.39 -0.71 16 23 C -0.15 -1.15 9.96 -40.00 -0.40 -1.55 16 24 C -0.06 -0.47 10.02 -39.52 -0.40 -0.86 16 25 C -0.16 -1.76 9.21 -39.40 -0.36 -2.12 16 26 C 0.17 2.22 6.52 -83.77 -0.55 1.68 16 27 C 0.13 2.61 8.22 -2.97 -0.02 2.59 16 28 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.35 7.81 3.31 45.56 0.15 7.96 16 30 H 0.10 1.67 8.09 -51.93 -0.42 1.25 16 31 H 0.07 1.24 6.98 -51.93 -0.36 0.88 16 32 H 0.12 1.33 6.24 -51.93 -0.32 1.00 16 33 H 0.13 1.88 7.47 -51.93 -0.39 1.49 16 34 H 0.20 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 36 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 37 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 38 H 0.13 1.36 6.19 -52.49 -0.32 1.04 16 39 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 40 H 0.10 1.79 8.09 -51.92 -0.42 1.37 16 LS Contribution 339.99 15.07 5.12 5.12 Total: -1.00 -33.57 339.99 -6.97 -40.54 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -3.87 Total: 11.58 kcal Atomic # 6 Polarization: 15.30 SS G_CDS: -3.59 Total: 11.71 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.21 Total: -48.45 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.29 Total: -34.71 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -4.14 Total: 14.21 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.57 -6.97 -40.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548658059.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.916 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds