Wall clock time and date at job start Tue Mar 31 2020 06:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40050 * 120.23991 * 2 1 4 4 C 1.35322 * 120.07309 * 180.02562 * 3 2 1 5 5 N 1.36110 * 120.77065 * 0.02562 * 4 3 2 6 6 C 1.36590 * 120.51609 * 359.96218 * 5 4 3 7 7 C 1.36455 * 120.23586 * 180.02562 * 2 1 3 8 8 N 1.33576 * 121.17124 * 180.02562 * 6 5 4 9 9 C 1.31686 * 121.69927 * 359.63103 * 8 6 5 10 10 C 1.40164 * 119.81409 * 0.64684 * 9 8 6 11 11 C 1.46741 * 120.75832 * 179.69197 * 10 9 8 12 12 O 1.21697 * 119.99512 * 258.66144 * 11 10 9 13 13 N 1.34773 * 120.00263 * 78.65647 * 11 10 9 14 14 C 1.47570 * 134.49453 * 174.93061 * 13 11 10 15 15 C 1.53947 * 86.11972 * 155.36244 * 14 13 11 16 16 O 1.42903 * 113.73983 * 269.15948 * 15 14 13 17 17 C 1.50693 * 113.74508 * 137.95252 * 15 14 13 18 18 H 1.07999 * 120.00255 * 1.92924 * 17 15 14 19 19 C 1.37883 * 120.00178 * 181.92499 * 17 15 14 20 20 N 1.31514 * 119.99914 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 120.00203 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47380 * 180.02562 * 21 19 17 23 23 H 1.48504 * 109.46885 * 299.99956 * 21 19 17 24 24 H 1.48495 * 109.47267 * 59.99735 * 21 19 17 25 25 C 1.47821 * 134.45302 * 354.80150 * 13 11 10 26 26 C 1.35061 * 119.43661 * 179.97438 * 5 4 3 27 27 O 1.21857 * 120.61437 * 0.02562 * 26 5 4 28 28 H 1.09002 * 109.46545 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46785 * 120.00628 * 1 2 3 30 30 H 1.08998 * 109.46775 * 240.00331 * 1 2 3 31 31 H 1.08001 * 119.96379 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.61533 * 179.97438 * 4 3 2 33 33 H 1.08002 * 120.23755 * 359.95961 * 7 2 1 34 34 H 1.08002 * 120.09289 * 180.33882 * 9 8 6 35 35 H 1.08998 * 113.77358 * 41.06254 * 14 13 11 36 36 H 1.09000 * 113.87495 * 269.67585 * 14 13 11 37 37 H 0.96697 * 114.00036 * 178.07401 * 16 15 14 38 38 H 0.96999 * 120.00302 * 179.97438 * 20 19 17 39 39 H 1.09004 * 113.76665 * 90.37735 * 25 13 11 40 40 H 1.08995 * 113.83604 * 318.91273 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2124 1.2099 0.0000 4 6 3.5656 1.2060 -0.0005 5 7 4.2585 0.0345 -0.0016 6 6 3.5988 -1.1615 -0.0014 7 6 2.1942 -1.1789 -0.0005 8 7 4.2657 -2.3189 -0.0019 9 6 5.5819 -2.3592 -0.0098 10 6 6.3157 -1.1650 -0.0043 11 6 7.7829 -1.1857 -0.0062 12 8 8.3954 -0.9926 1.0275 13 7 8.4521 -1.4186 -1.1526 14 6 9.8770 -1.4185 -1.5367 15 6 9.4643 -2.3780 -2.6676 16 8 9.5410 -3.7587 -2.3073 17 6 10.1239 -2.0781 -3.9889 18 1 10.8380 -1.2714 -4.0652 19 6 9.8161 -2.8336 -5.1005 20 7 8.9463 -3.8156 -5.0077 21 14 10.6343 -2.4623 -6.7381 22 1 10.1356 -3.4099 -7.7668 23 1 10.3118 -1.0720 -7.1486 24 1 12.1056 -2.6091 -6.6008 25 6 8.0528 -1.7790 -2.5295 26 6 5.6088 0.0620 -0.0026 27 8 6.2079 1.1231 -0.0021 28 1 -0.3632 1.0277 -0.0005 29 1 -0.3633 -0.5139 -0.8899 30 1 -0.3633 -0.5138 0.8900 31 1 1.6757 2.1472 -0.0004 32 1 4.1020 2.1433 -0.0009 33 1 1.6619 -2.1187 -0.0003 34 1 6.0946 -3.3097 -0.0156 35 1 10.5325 -1.8719 -0.7933 36 1 10.2386 -0.4528 -1.8900 37 1 9.2546 -4.3638 -3.0051 38 1 8.7294 -4.3469 -5.7897 39 1 7.8756 -0.9187 -3.1749 40 1 7.2547 -2.5197 -2.5770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548658702.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:23 Heat of formation + Delta-G solvation = 0.725447 kcal Electronic energy + Delta-G solvation = -27699.400496 eV Core-core repulsion = 23674.912656 eV Total energy + Delta-G solvation = -4024.487841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 7.28 seconds Orbital eigenvalues (eV) -42.83588 -39.53907 -38.58028 -37.59054 -36.97329 -34.97412 -33.86058 -32.18831 -31.98890 -30.73735 -29.28377 -27.92709 -25.37557 -25.21573 -25.09517 -23.76027 -23.46606 -20.64556 -19.45971 -18.78891 -17.96522 -17.87405 -17.32111 -16.80194 -16.26224 -15.82868 -15.53663 -15.24566 -15.01754 -14.89243 -14.28776 -14.20723 -14.09085 -13.95821 -13.28968 -13.20418 -12.96318 -12.64028 -12.57893 -12.37139 -12.30177 -12.19007 -11.87161 -11.52837 -11.05461 -11.01582 -10.67403 -10.59587 -10.51091 -10.25605 -10.20062 -9.80076 -9.53259 -9.16108 -8.73216 -8.38016 -7.86330 -7.72930 -6.35875 -4.45677 -0.20820 0.24391 1.82741 1.84117 2.29350 3.18549 3.19258 3.24042 3.26978 3.47650 3.66404 3.77614 4.03664 4.08146 4.19081 4.22027 4.48835 4.65327 4.85890 4.87588 5.00718 5.02098 5.15991 5.21357 5.29402 5.48152 5.62016 5.66166 5.69865 5.79692 6.02194 6.17523 6.21955 6.29555 6.42829 6.59700 6.68835 6.75684 7.14740 7.55368 7.57521 7.66244 7.86276 8.53511 8.57160 8.84049 9.25011 9.46002 10.70876 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.016154 B = 0.003275 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.933841 B = 8546.315627 C = 9168.949297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.000 4.000 3 C -0.169 4.169 4 C 0.109 3.891 5 N -0.426 5.426 6 C 0.394 3.606 7 C -0.143 4.143 8 N -0.541 5.541 9 C 0.225 3.775 10 C -0.324 4.324 11 C 0.608 3.392 12 O -0.553 6.553 13 N -0.623 5.623 14 C 0.114 3.886 15 C 0.240 3.760 16 O -0.571 6.571 17 C -0.536 4.536 18 H 0.071 0.929 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.907 3.093 22 H -0.285 1.285 23 H -0.274 1.274 24 H -0.273 1.273 25 C 0.082 3.918 26 C 0.529 3.471 27 O -0.513 6.513 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.160 0.840 32 H 0.183 0.817 33 H 0.167 0.833 34 H 0.178 0.822 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.391 0.609 38 H 0.273 0.727 39 H 0.078 0.922 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.492 6.246 6.153 22.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.007 4.007 3 C -0.190 4.190 4 C -0.015 4.015 5 N -0.129 5.129 6 C 0.154 3.846 7 C -0.163 4.163 8 N -0.265 5.265 9 C 0.075 3.925 10 C -0.335 4.335 11 C 0.395 3.605 12 O -0.432 6.432 13 N -0.356 5.356 14 C -0.008 4.008 15 C 0.198 3.802 16 O -0.383 6.383 17 C -0.575 4.575 18 H 0.089 0.911 19 C -0.130 4.130 20 N -0.538 5.538 21 Si 0.734 3.266 22 H -0.210 1.210 23 H -0.200 1.200 24 H -0.198 1.198 25 C -0.041 4.041 26 C 0.333 3.667 27 O -0.390 6.390 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.177 0.823 32 H 0.201 0.799 33 H 0.185 0.815 34 H 0.195 0.805 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.246 0.754 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.924 6.329 7.318 22.149 hybrid contribution 0.515 0.678 -1.514 1.737 sum -19.409 7.007 5.803 21.436 Atomic orbital electron populations 1.20956 0.88855 1.04158 1.03847 1.20322 0.97779 0.92157 0.90413 1.20980 0.92064 0.99754 1.06189 1.22421 0.93602 0.91008 0.94443 1.44414 1.10455 1.07618 1.50407 1.20673 0.94167 0.80149 0.89657 1.20793 0.88720 1.00474 1.06318 1.68855 1.09832 1.20356 1.27409 1.23174 0.88145 0.98239 0.82971 1.21366 0.96503 0.92467 1.23185 1.16653 0.84719 0.76317 0.82834 1.90741 1.69314 1.51295 1.31833 1.50170 1.10165 1.66542 1.08756 1.23453 0.82042 0.99295 0.95992 1.19829 0.89033 0.80613 0.90682 1.86062 1.89486 1.16632 1.46102 1.21469 1.25991 1.17241 0.92756 0.91093 1.25062 0.94056 0.94274 0.99637 1.69394 1.32919 1.20006 1.31503 0.86397 0.79903 0.78321 0.81941 1.21028 1.19965 1.19833 1.24318 1.02691 0.98611 0.78471 1.16939 0.78999 0.91242 0.79545 1.90949 1.64994 1.31938 1.51077 0.90518 0.89613 0.89677 0.82279 0.79946 0.81524 0.80495 0.90934 0.89560 0.75426 0.91691 0.90379 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.31 10.07 36.01 0.36 0.05 16 2 C 0.00 0.00 5.88 -104.58 -0.62 -0.62 16 3 C -0.17 -1.04 9.64 -39.94 -0.38 -1.42 16 4 C 0.11 1.07 10.07 -16.69 -0.17 0.90 16 5 N -0.43 -5.92 2.76 -64.90 -0.18 -6.10 16 6 C 0.39 5.02 7.32 -155.80 -1.14 3.88 16 7 C -0.14 -1.19 9.63 -39.38 -0.38 -1.57 16 8 N -0.54 -7.92 10.28 -11.95 -0.12 -8.05 16 9 C 0.23 3.76 11.03 -16.89 -0.19 3.58 16 10 C -0.32 -6.42 5.41 -104.46 -0.57 -6.98 16 11 C 0.61 14.27 7.07 -12.83 -0.09 14.18 16 12 O -0.55 -14.57 17.84 5.19 0.09 -14.48 16 13 N -0.62 -14.53 3.61 -179.63 -0.65 -15.17 16 14 C 0.11 2.65 8.23 -2.97 -0.02 2.63 16 15 C 0.24 5.93 1.40 -90.85 -0.13 5.80 16 16 O -0.57 -14.77 13.48 -35.23 -0.48 -15.24 16 17 C -0.54 -13.76 8.61 -34.44 -0.30 -14.05 16 18 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 19 C 0.07 1.82 5.39 -17.82 -0.10 1.73 16 20 N -0.90 -22.89 11.20 55.43 0.62 -22.26 16 21 Si 0.91 19.75 29.54 -169.99 -5.02 14.73 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 25 C 0.08 1.88 8.00 -2.83 -0.02 1.86 16 26 C 0.53 9.84 7.39 -14.85 -0.11 9.73 16 27 O -0.51 -10.88 16.17 5.05 0.08 -10.79 16 28 H 0.08 0.10 7.91 -51.93 -0.41 -0.31 16 29 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.16 0.43 7.98 -52.49 -0.42 0.01 16 32 H 0.18 1.67 7.32 -52.49 -0.38 1.28 16 33 H 0.17 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.18 2.73 8.06 -52.49 -0.42 2.31 16 35 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 36 H 0.09 1.87 8.09 -51.93 -0.42 1.45 16 37 H 0.39 10.13 6.60 45.56 0.30 10.43 16 38 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 39 H 0.08 1.78 8.09 -51.93 -0.42 1.36 16 40 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -34.54 352.18 -8.03 -42.57 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -3.84 Total: 9.81 kcal Atomic # 6 Polarization: 23.54 SS G_CDS: -3.85 Total: 19.69 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.33 Total: -51.59 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -0.30 Total: -40.52 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.54 -8.03 -42.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548658702.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.292 kcal (2) G-P(sol) polarization free energy of solvation -34.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.28 seconds