Wall clock time and date at job start Tue Mar 31 2020 05:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99999 * 2 1 4 4 H 1.48495 * 109.47019 * 270.00077 * 3 2 1 5 5 H 1.48495 * 109.47355 * 30.00252 * 3 2 1 6 6 H 1.48505 * 109.46703 * 150.00091 * 3 2 1 7 7 C 1.37874 * 119.99421 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99546 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00706 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47576 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00004 * 83.02516 * 10 9 7 12 12 O 1.21628 * 120.00026 * 180.39600 * 11 10 9 13 13 C 1.47353 * 120.00009 * 0.39095 * 11 10 9 14 14 C 1.47018 * 127.19617 * 351.32539 * 13 11 10 15 15 C 1.34177 * 105.95888 * 179.97438 * 14 13 11 16 16 O 1.34218 * 109.12691 * 359.97438 * 15 14 13 17 17 C 1.33658 * 110.90755 * 0.02562 * 16 15 14 18 18 C 1.50701 * 125.80090 * 180.02562 * 17 16 15 19 19 C 1.52997 * 117.50090 * 8.64314 * 18 17 16 20 20 C 1.52998 * 117.49629 * 300.01783 * 18 17 16 21 21 C 1.39973 * 119.99611 * 263.02273 * 10 9 7 22 22 C 1.38860 * 120.05019 * 351.40193 * 21 10 9 23 23 C 1.38112 * 119.95411 * 179.78653 * 22 21 10 24 24 C 1.38475 * 120.04218 * 0.46666 * 23 22 21 25 25 F 1.35102 * 119.94796 * 179.76082 * 24 23 22 26 26 C 1.38467 * 120.09805 * 359.78563 * 24 23 22 27 27 C 1.38116 * 120.04713 * 359.97438 * 26 24 23 28 28 H 0.97005 * 120.00354 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47478 * 59.99466 * 9 7 2 30 30 H 1.09007 * 109.46709 * 299.99969 * 9 7 2 31 31 H 1.07998 * 127.02170 * 359.97085 * 14 13 11 32 32 H 1.08004 * 125.43842 * 180.02562 * 15 14 13 33 33 H 1.08998 * 115.54700 * 154.35799 * 18 17 16 34 34 H 1.09001 * 117.49877 * 0.02562 * 19 18 17 35 35 H 1.09003 * 117.50132 * 145.02474 * 19 18 17 36 36 H 1.09000 * 117.49790 * 214.98158 * 20 18 17 37 37 H 1.08999 * 117.50457 * 359.97438 * 20 18 17 38 38 H 1.08007 * 120.02273 * 0.02562 * 22 21 10 39 39 H 1.07999 * 119.97590 * 180.23133 * 23 22 21 40 40 H 1.07995 * 119.97688 * 179.97438 * 26 24 23 41 41 H 1.07996 * 120.02457 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 7 2.2029 -3.6127 -0.0015 11 6 2.7476 -4.0334 1.1573 12 8 3.5434 -4.9532 1.1566 13 6 2.3791 -3.3789 2.4250 14 6 1.5821 -2.1552 2.5947 15 6 1.5074 -1.9440 3.9176 16 8 2.1773 -2.9158 4.5566 17 6 2.7055 -3.7823 3.6868 18 6 3.5219 -4.9988 4.0399 19 6 3.6049 -5.3896 5.5168 20 6 4.8203 -4.7766 4.8182 21 6 2.5466 -4.2398 -1.2047 22 6 1.8585 -3.9315 -2.3708 23 6 2.2022 -4.5482 -3.5579 24 6 3.2258 -5.4804 -3.5838 25 9 3.5572 -6.0861 -4.7451 26 6 3.9098 -5.7932 -2.4212 27 6 3.5726 -5.1752 -1.2329 28 1 -0.4851 0.8401 0.0004 29 1 0.6245 -2.5563 -0.8919 30 1 0.6239 -2.5574 0.8881 31 1 1.1458 -1.5498 1.8139 32 1 0.9900 -1.1235 4.3926 33 1 3.5068 -5.8044 3.3058 34 1 3.0686 -4.7671 6.2331 35 1 3.6443 -6.4526 5.7547 36 1 5.6592 -5.4363 4.5965 37 1 5.0842 -3.7505 5.0745 38 1 1.0577 -3.2071 -2.3503 39 1 1.6698 -4.3059 -4.4657 40 1 4.7074 -6.5209 -2.4435 41 1 4.1060 -5.4198 -0.3262 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577254909.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:51 Heat of formation + Delta-G solvation = 24.057899 kcal Electronic energy + Delta-G solvation = -28020.288044 eV Core-core repulsion = 23976.892012 eV Total energy + Delta-G solvation = -4043.396031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.45478 -42.13192 -40.10347 -37.68353 -36.97977 -35.47969 -33.05850 -32.27784 -30.68725 -29.30876 -29.04386 -27.44257 -24.14561 -23.59977 -22.60722 -22.39863 -22.33037 -21.16642 -20.20279 -18.52900 -17.31502 -17.14208 -16.86923 -16.61920 -16.10284 -15.78033 -15.36010 -15.18545 -14.97360 -14.66803 -14.41704 -14.30701 -13.98540 -13.41750 -13.06269 -12.83634 -12.72085 -12.58684 -12.27150 -12.16720 -11.97435 -11.78655 -11.56484 -11.21984 -11.07103 -10.81702 -10.77497 -10.39868 -10.34745 -10.24029 -10.13213 -9.30129 -9.12807 -8.91491 -8.72004 -8.64457 -8.03215 -7.22085 -6.40594 -4.48008 1.40584 1.70686 1.89159 2.75069 3.12200 3.16974 3.20178 3.24474 3.56513 3.68113 3.97661 4.14737 4.29104 4.59471 4.74501 4.88317 4.90932 5.00868 5.03392 5.24099 5.27806 5.37376 5.59095 5.62552 5.72694 5.79605 5.83458 5.98954 6.01697 6.09330 6.24868 6.32082 6.41517 6.46536 6.52749 6.65515 6.75842 6.78273 6.98479 7.11789 7.24243 7.53704 7.55695 7.65258 7.75954 7.96611 8.56029 8.71166 9.16851 10.63419 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.008174 B = 0.005730 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3424.603431 B = 4885.288079 C = 7703.656731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.206 3.794 10 N -0.527 5.527 11 C 0.596 3.404 12 O -0.546 6.546 13 C -0.225 4.225 14 C -0.162 4.162 15 C -0.081 4.081 16 O -0.183 6.183 17 C 0.087 3.913 18 C -0.076 4.076 19 C -0.175 4.175 20 C -0.161 4.161 21 C 0.168 3.832 22 C -0.125 4.125 23 C -0.131 4.131 24 C 0.049 3.951 25 F -0.153 7.153 26 C -0.135 4.135 27 C -0.151 4.151 28 H 0.270 0.730 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.221 0.779 32 H 0.202 0.798 33 H 0.146 0.854 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.145 0.855 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.978 -7.017 5.074 9.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.573 4.573 8 H 0.084 0.916 9 C 0.088 3.912 10 N -0.244 5.244 11 C 0.390 3.610 12 O -0.429 6.429 13 C -0.229 4.229 14 C -0.180 4.180 15 C -0.145 4.145 16 O -0.080 6.080 17 C 0.034 3.966 18 C -0.094 4.094 19 C -0.212 4.212 20 C -0.198 4.198 21 C 0.071 3.929 22 C -0.146 4.146 23 C -0.151 4.151 24 C 0.029 3.971 25 F -0.132 7.132 26 C -0.154 4.154 27 C -0.170 4.170 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.237 0.763 32 H 0.219 0.781 33 H 0.164 0.836 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.162 0.838 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 3.189 -7.313 5.425 9.648 hybrid contribution 0.275 1.297 -0.652 1.477 sum 3.464 -6.017 4.773 8.425 Atomic orbital electron populations 1.69914 1.05801 1.27963 1.48786 1.24912 0.94965 0.99326 0.94501 0.86479 0.80030 0.82482 0.78687 1.20208 1.20760 1.19528 1.21366 0.94025 0.89830 1.52079 0.91629 1.20413 0.87975 0.82177 1.00624 1.45758 1.42406 1.32614 1.03606 1.17327 0.79511 0.81295 0.82899 1.90313 1.35625 1.30790 1.86161 1.20880 1.09038 1.00718 0.92246 1.24944 0.98811 0.96441 0.97770 1.23944 1.03294 0.94626 0.92643 1.83611 1.54822 1.31665 1.37874 1.21475 0.96660 0.91598 0.86839 1.20656 0.98087 0.94512 0.96150 1.23043 1.02081 1.01819 0.94245 1.23012 0.91525 1.02643 1.02648 1.18084 0.94677 0.93891 0.86251 1.20940 1.01380 1.01671 0.90561 1.20825 0.97883 0.97475 0.98891 1.17702 0.99604 0.98076 0.81731 1.91424 1.92166 1.82291 1.47275 1.21057 1.00914 1.02029 0.91435 1.22600 0.97415 0.96530 1.00456 0.91984 0.93210 0.91806 0.76314 0.78132 0.83617 0.88253 0.88080 0.87845 0.88548 0.83764 0.85109 0.85364 0.79659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.89 13.21 55.43 0.73 -21.16 16 2 C 0.07 1.61 4.74 -17.82 -0.08 1.53 16 3 Si 0.90 19.36 29.54 -169.99 -5.02 14.34 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.53 -12.88 7.09 -34.44 -0.24 -13.12 16 8 H 0.07 1.68 7.81 -52.48 -0.41 1.27 16 9 C 0.21 4.60 4.45 -5.20 -0.02 4.58 16 10 N -0.53 -11.13 2.70 -115.94 -0.31 -11.45 16 11 C 0.60 12.47 7.54 -12.55 -0.09 12.38 16 12 O -0.55 -11.19 11.47 5.25 0.06 -11.13 16 13 C -0.22 -4.48 6.08 -103.28 -0.63 -5.11 16 14 C -0.16 -3.22 8.22 -37.46 -0.31 -3.53 16 15 C -0.08 -1.36 12.03 29.30 0.35 -1.01 16 16 O -0.18 -3.07 10.23 7.63 0.08 -2.99 16 17 C 0.09 1.54 6.85 -34.96 -0.24 1.30 16 18 C -0.08 -1.11 5.56 -91.77 -0.51 -1.62 16 19 C -0.17 -1.98 10.17 -26.73 -0.27 -2.25 16 20 C -0.16 -1.95 10.23 -26.73 -0.27 -2.22 16 21 C 0.17 3.34 6.48 -83.68 -0.54 2.80 16 22 C -0.13 -2.30 9.30 -39.40 -0.37 -2.67 16 23 C -0.13 -2.17 10.02 -39.54 -0.40 -2.56 16 24 C 0.05 0.82 7.30 -39.41 -0.29 0.53 16 25 F -0.15 -2.48 17.26 2.25 0.04 -2.44 16 26 C -0.13 -2.23 10.02 -39.54 -0.40 -2.63 16 27 C -0.15 -2.80 9.01 -39.39 -0.35 -3.15 16 28 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 29 H 0.05 1.13 5.64 -51.93 -0.29 0.84 16 30 H 0.06 1.46 4.78 -51.92 -0.25 1.21 16 31 H 0.22 4.84 3.08 -52.49 -0.16 4.68 16 32 H 0.20 2.65 8.06 -52.48 -0.42 2.23 16 33 H 0.15 2.21 6.84 -51.93 -0.36 1.85 16 34 H 0.10 1.12 7.96 -51.93 -0.41 0.71 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.14 2.67 5.88 -52.48 -0.31 2.36 16 39 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 40 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.19 3.57 4.61 -55.84 -0.26 3.31 16 LS Contribution 344.35 15.07 5.19 5.19 Total: -1.00 -25.91 344.35 -8.02 -33.94 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -4.12 Total: 12.48 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -4.67 Total: -16.77 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.42 Total: -32.61 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.14 Total: -14.13 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -25.91 -8.02 -33.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577254909.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.993 kcal (2) G-P(sol) polarization free energy of solvation -25.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds